Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0017199

Physical Location & Seq

Genomic Coordinates Reverse (-)

4174434 .. 4175609

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACATTGATAGCCAAGTCGTCACGTCTGGGTCAAAGACTCACACTTTCGCCCACACACAACTCCGCCTTCTGCCAAGATCTCAGCCTTATTTTTCTATTACAATCCTGCAAAAAAGTCTCAGAAGTCGCACAAATCCATGGCTCCATGGTCAAGACTGGTCTCGACCACCTTCCTTTTCCCTCCCGCAAGCTTCTCGCCTCTTCCATCCAAGACATCCAATACGCCGCCGCCATTTTCAGCCGCATACAAAATCCAAATCTCTTCATGTTCAATACCATGCTCAGAGCCTACTCCATCAGCAATGATCCAAAGCATGCTTTTCATATCTTCAACAACTTGAGAGCTCAGAATATCACGCTGGACCAGTTCTCTTTCGTCGCGACGATCAAAGCCTGCGCTCGTGAATTGGCCATTGGGATCGGCCGAGGGATTCATGGGGTTGTTATGAGGTCTGGGTTTGGACCGTTTGTCAATGTAAAGAATACCCTTTTGCAGTTTTATCGTGTTTCCGGAAAAATTGAAGATGCCCAGAAGGTGTTTGATGAATTTCCTCAAAGAAATGATTTGGTTTCGTTGAATACTTTGATGGGTGGGTATCTTCATGCGTCTCAGCCTCATGTGGTTGTGGATTTGTTCAAGCAAATGTGTAGTATCGGTTTTGAGGCTAGTGCGACCACCGTTTTGAACCTTTTGTCTGCCATTGGTGATTTAGAGAGTCACCTTGCAGGAGAGTGTATTCATGGCTATTGCATCAAGATTGCCTTCAGTTCGGATTTACCTGTTCTTACTGCTTTGATCGATATGTACTCGAAGAAGGGGCAAATTGACTTGGGATGTCGGATTTTTGATGGAGTTTCTGTGAAGGATGTTGTGTTATGGAATTGTTTGGTTGATAAGTTTGCAAAATGTGGCATGGTAGAAGAAGCAGTAGCCTTGTTGCGCCTGATGAAACTCGAAGGAATGAAACCAAATTCATCTACATTGGCGGGGTTGCTTTCGGATTGTGCTGCTTCTGGGTCTGTAAGTGTATGGAGTTGCATCAAGGATTATGTGGAAGACGAAAACTTGGCATTGGATGCCGTTCTCGGAACAGCTCTGATTGATATGTATGCTAAATGCGGGTTTTTGGACAGGGCACTTGACATCTTTGAGATCATGGAAGCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

392

Amino Acids

42.94

Weight (kDa)

6.78

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	86 - 135	2.5e-07	PPR repeat family
PPR_2	PF13041	289 - 337	1.8e-09	PPR repeat family
PPR	PF01535	292 - 321	7.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26900
malus_domestica	MD13G1073800.v1.1
prunus_persica	Prupe.1G272200_v2.0.a1
pyrus_communis	pycom16g06510
rosa_chinensis	RchiOBHm_Chr4g0440061
rosa_laevigata	RLG00000006209
rosa_multiflora	Rmu_sc0001685.1_g000003
rosa_rugosa	Rorug04G0324000
rosa_samantha	Rh4AG374600 Rh4BG387000 Rh4CG401500 Rh4DG381200
rosa_wichuraiana	Rw4G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	383
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	7 cut(s)	66, 187, 228, 231, 244, 989, 1122
AclWI	GGATC	2 cut(s)	302, 428
AcoI	YGGCCR	2 cut(s)	411, 424
AcsI	RAATTY	2 cut(s)	548, 973
AcuI	CTGAAG	1 cut(s)	751
AfaI	GTAC	1 cut(s)	809
AgsI	TTSAA	6 cut(s)	274, 334, 524, 580, 640, 688
AhdI	GACNNNNNGTC	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	193, 347, 1097
AluI	AGCT	3 cut(s)	193, 347, 1097
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	124, 167, 615
AlwI	GGATC	2 cut(s)	302, 428
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	2 cut(s)	411, 424
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	2 cut(s)	548, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AspLEI	GCGC	2 cut(s)	401, 945
AspS9I	GGNCC	2 cut(s)	364, 464
AsuHPI	GGTGA	2 cut(s)	713, 719
AvaII	GGWCC	2 cut(s)	364, 464
BaeGI	GKGCMC	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	1065
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	4 cut(s)	215, 305, 583, 845
BceAI	ACGGC	1 cut(s)	1067
BcgI	CGANNNNNNTGC	4 cut(s)	178, 212, 485, 519
BcoDI	GTCTC	3 cut(s)	124, 167, 615
BfaI	CTAG	1 cut(s)	669
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	228, 231, 244, 1011
BlsI	GCNGC	4 cut(s)	229, 232, 245, 1012
Bme18I	GGWCC	2 cut(s)	364, 464
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	364, 464
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	4 cut(s)	517, 762, 1050, 1069
BpiI	GAAGAC	1 cut(s)	1065
BpuEI	CTTGAG	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	139, 147, 427
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bse1I	ACTGG	2 cut(s)	163, 367
Bse3DI	GCAATG	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	139, 147, 427
BseGI	GGATG	5 cut(s)	207, 216, 842, 874, 1084
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	5 cut(s)	97, 135, 298, 362, 626
BseNI	ACTGG	2 cut(s)	163, 367
BseSI	GKGCMC	1 cut(s)	1141
BseX3I	CGGCCG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	997
Bsh1236I	CGCG	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	413, 426
BshVI	ATCGAT	1 cut(s)	801
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	513
BsmAI	GTCTC	3 cut(s)	124, 167, 615
BsmBI	CGTCTC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	413, 426
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	349, 1141
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
Bsp19I	CCATGG	2 cut(s)	139, 147
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	7 cut(s)	66, 187, 228, 231, 244, 989, 1122
BspANI	GGCC	2 cut(s)	413, 426
BspCNI	CTCAG	5 cut(s)	96, 134, 297, 361, 625
BspDI	ATCGAT	1 cut(s)	801
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	302, 428
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	163, 367
BssECI	CCNNGG	3 cut(s)	139, 147, 427
BssMI	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	139, 147
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	468, 682
Bst6I	CTCTTC	2 cut(s)	208, 269
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstC8I	GCNNGC	3 cut(s)	191, 318, 397
BstDEI	CTNAG	5 cut(s)	83, 121, 284, 348, 612
BstDSI	CCRYGG	2 cut(s)	139, 147
BstF5I	GGATG	5 cut(s)	207, 216, 842, 874, 1084
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	401, 945
BstKTI	GATC	6 cut(s)	82, 310, 390, 423, 801, 1158
BstMAI	GTCTC	3 cut(s)	124, 167, 615
BstMBI	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	1079
BstNSI	RCATGY	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	997
BstV2I	GAAGAC	1 cut(s)	1065
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	413, 426
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	2 cut(s)	139, 147
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	5 cut(s)	207, 216, 842, 874, 1084
BtuMI	TCGCGA	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	191, 318, 397
CfoI	GCGC	2 cut(s)	401, 945
Cfr13I	GGNCC	2 cut(s)	364, 464
ClaI	ATCGAT	1 cut(s)	801
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	808
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	5 cut(s)	83, 121, 284, 348, 612
DpnI	GATC	6 cut(s)	81, 309, 389, 422, 800, 1157
DpnII	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
DriI	GACNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	411, 424
EagI	CGGCCG	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	208, 269
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	2 cut(s)	208, 269
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	139, 147
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	364, 464
Eco52I	CGGCCG	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	139, 147
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	139, 147
Esp3I	CGTCTC	1 cut(s)	615
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FauI	CCCGC	3 cut(s)	194, 982, 1115
Fnu4HI	GCNGC	4 cut(s)	228, 231, 244, 1011
FokI	GGATG	5 cut(s)	194, 203, 849, 881, 1091
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	4 cut(s)	228, 231, 244, 1011
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	2 cut(s)	400, 944
GluI	GCNGC	4 cut(s)	228, 231, 244, 1011
HaeIII	GGCC	2 cut(s)	413, 426
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	2 cut(s)	401, 945
Hin6I	GCGC	2 cut(s)	399, 943
HinP1I	GCGC	2 cut(s)	399, 943
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	39, 433, 718
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	2 cut(s)	713, 719
Hpy188I	TCNGA	8 cut(s)	124, 287, 351, 775, 843, 1003, 1091, 1101
Hpy188III	TCNNGA	6 cut(s)	154, 164, 382, 404, 513, 757
Hpy99I	CGWCG	2 cut(s)	383, 388
HpyAV	CCTTC	7 cut(s)	79, 182, 529, 775, 811, 859, 953
HpyCH4III	ACNGT	2 cut(s)	468, 682
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	111, 496, 728, 753, 905, 1041
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1079
HpyF3I	CTNAG	5 cut(s)	83, 121, 284, 348, 612
HpySE526I	ACGT	1 cut(s)	25
HspAI	GCGC	2 cut(s)	399, 943
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	4 cut(s)	517, 762, 1050, 1069
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	21, 719
MalI	GATC	6 cut(s)	81, 309, 389, 422, 800, 1157
MboI	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
MboII	GAAGA	8 cut(s)	195, 256, 322, 536, 593, 826, 935, 1070
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	2 cut(s)	349, 1141
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	6 cut(s)	407, 519, 548, 825, 883, 973
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	33, 727
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	7 cut(s)	193, 211, 422, 444, 564, 627, 658
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	1079
NcoI	CCATGG	2 cut(s)	139, 147
NdeII	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
NlaIV	GGNNCC	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	21, 719
NruI	TCGCGA	1 cut(s)	383
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	4 cut(s)	229, 232, 245, 1012
PleI	GAGTC	2 cut(s)	33, 726
PpsI	GAGTC	2 cut(s)	33, 726
Psp124BI	GAGCTC	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	364, 464
PsuI	RGATCY	1 cut(s)	79
RruI	TCGCGA	1 cut(s)	383
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	349
SatI	GCNGC	4 cut(s)	228, 231, 244, 1011
Sau3AI	GATC	6 cut(s)	79, 307, 387, 420, 798, 1155
Sau96I	GGNCC	2 cut(s)	364, 464
SchI	GAGTC	2 cut(s)	33, 727
SduI	GDGCHC	2 cut(s)	349, 1141
SfaNI	GCATC	4 cut(s)	517, 762, 1050, 1069
SinI	GGWCC	2 cut(s)	364, 464
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	6 cut(s)	407, 519, 548, 825, 883, 973
SsiI	CCGC	7 cut(s)	66, 187, 228, 231, 244, 989, 1122
SspMI	CTAG	1 cut(s)	669
SstI	GAGCTC	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	139, 147
TaaI	ACNGT	2 cut(s)	468, 682
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	4 cut(s)	165, 801, 812, 957
TasI	AATT	6 cut(s)	407, 519, 548, 825, 883, 973
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	3 cut(s)	230, 233, 246
TfiI	GAWTC	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	21, 719
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	2 cut(s)	21, 719
TspDTI	ATGAA	9 cut(s)	256, 314, 425, 561, 593, 731, 965, 966, 980
VpaK11BI	GGWCC	2 cut(s)	364, 464
XapI	RAATTY	2 cut(s)	548, 973
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.