pycom16g07640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012894
Physical Location & Seq
Forward (+)
5016082 .. 5016384
303 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGAATAATTATTCTTTGAATAATTTTCATGGCCTGAGAGGCTATTCTTCTTCTTCTTCTTTTTCATCTAAGATGAAGACGATGAAGATGAGGAGGAGGCAGAGGCGGAGGCAGGTGGCGAGGGGCCGCGGTGGAGGAGGCAGGTCGAGGGTGCAGGTGAAGGTGAAGAAGCTGCAAATGTTGATTCCTGGAGGGAGAGGGTTGAAGGCGGACCAGCTTTTTCTTCAAACCGCAGATTATATACTCCAGCTGAGGTTGCAGGTTAATGTTTTGCAAGCGCTTTCCAAGATTCACAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.45

Weight (kDa)

12.0

Isoelectric Point (pI)

73.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 103, 145
Acc36I ACCTGC 4 cut(s) 103, 132, 145, 250
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 106, 127, 129, 209, 231
AfeI AGCGCT 1 cut(s) 279
AgsI TTSAA 3 cut(s) 19, 205, 227
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 4 cut(s) 172, 217, 250, 298
AluI AGCT 4 cut(s) 172, 217, 250, 298
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 2 cut(s) 31, 124
ApeKI GCWGC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 124, 211
AsuHPI GGTGA 2 cut(s) 169, 175
AvaII GGWCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 281
BfuAI ACCTGC 4 cut(s) 103, 132, 145, 250
BglI GCCNNNNNGGC 1 cut(s) 39
BisI GCNGC 2 cut(s) 127, 173
BlsI GCNGC 2 cut(s) 128, 174
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 124, 211
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 2 cut(s) 210, 230
Bpu10I CCTNAGC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 26, 242
BseRI GAGGAG 3 cut(s) 106, 109, 150
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 33, 126
BsnI GGCC 2 cut(s) 33, 126
BspACI CCGC 5 cut(s) 106, 127, 129, 209, 231
BspANI GGCC 2 cut(s) 33, 126
BspCNI CTCAG 2 cut(s) 27, 243
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 125
BspMI ACCTGC 4 cut(s) 103, 132, 145, 250
BssECI CCNNGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 35, 69, 251
BstDSI CCRYGG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 39, 256
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 33, 126
BtgI CCRYGG 1 cut(s) 127
BveI ACCTGC 4 cut(s) 103, 132, 145, 250
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 124, 211
Cfr42I CCGCGG 1 cut(s) 130
CviAII CATG 1 cut(s) 29
CviJI RGCY 7 cut(s) 33, 42, 126, 172, 217, 250, 298
CviKI_1 RGCY 7 cut(s) 33, 42, 126, 172, 217, 250, 298
DdeI CTNAG 3 cut(s) 35, 69, 251
EciI GGCGGA 2 cut(s) 121, 224
Eco47I GGWCC 1 cut(s) 211
Eco47III AGCGCT 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 30, 240, 242, 301
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 127, 173
Fsp4HI GCNGC 2 cut(s) 127, 173
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 127, 173
GsuI CTGGAG 2 cut(s) 210, 230
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 33, 126
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 2 cut(s) 184, 289
HphI GGTGA 2 cut(s) 169, 175
HpyAV CCTTC 2 cut(s) 154, 199
HpyCH4V TGCA 4 cut(s) 154, 175, 259, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 256
HpyF3I CTNAG 3 cut(s) 35, 69, 251
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 278
KspI CCGCGG 1 cut(s) 130
LpnPI CCDG 9 cut(s) 47, 98, 127, 140, 174, 201, 227, 245, 260
Lsp1109I GCAGC 1 cut(s) 159
MboII GAAGA 8 cut(s) 39, 42, 45, 48, 88, 97, 178, 215
MluCI AATT 2 cut(s) 7, 22
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 129, 250
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 39, 256
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 125
PaqCI CACCTGC 2 cut(s) 103, 145
PfeI GAWTC 2 cut(s) 184, 289
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 2 cut(s) 128, 174
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 124, 211
PvuII CAGCTG 1 cut(s) 250
SacII CCGCGG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 127, 173
Sau96I GGNCC 2 cut(s) 124, 211
ScrFI CCNGG 1 cut(s) 189
Sfr303I CCGCGG 1 cut(s) 130
SgrBI CCGCGG 1 cut(s) 130
SinI GGWCC 1 cut(s) 211
Sse9I AATT 2 cut(s) 7, 22
SsiI CCGC 5 cut(s) 106, 127, 129, 209, 231
StyD4I CCNGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 146
TasI AATT 2 cut(s) 7, 22
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 184, 289
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 5 cut(s) 17, 17, 54, 89, 98
VpaK11BI GGWCC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.