pycom16g08670

Nucleotide-diphospho-sugar transferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
5791744 .. 5791980
237 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGCACACAAAAATAACACAAATTGTGCTTGCTGCTGCGGGATATAGTTACAAGGACATGCTAATGAGCTGGGTGTGCAGATTGCGCCAATTGCAAATCACAAATTTTATCATTTGTGCCCTTGACAAGAAAATATACGAGTTTGCTGTCTTGCAGGAAGTTTCGATATTTACAGTGTGTGAAGTTTCGGTAAATGGAAACTCAAACATCGTGATGCTAGTCTGTATTGTAGATTGA

Protein Analysis

79

Amino Acids

8.85

Weight (kDa)

6.53

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012783)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 103
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 32, 35
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 19, 22
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 33, 36
BlsI GCNGC 2 cut(s) 34, 37
BmsI GCATC 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 2 cut(s) 19, 22
BseYI CCCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 121
BspACI CCGC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 30
BstHHI GCGC 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 75, 84, 91
BstNSI RCATGY 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 19, 22
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 87
CviAII CATG 1 cut(s) 58
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 45, 59, 136
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 33, 36
Fsp4HI GCNGC 2 cut(s) 33, 36
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 33, 36
GsaI CCCAGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 4, 78, 94, 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 84, 91
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 85
LpnPI CCDG 2 cut(s) 55, 140
Lsp1109I GCAGC 2 cut(s) 19, 22
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 47
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 21, 89, 103
MslI CAYNNNNRTG 2 cut(s) 62, 212
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 75, 84, 91
NlaIII CATG 1 cut(s) 61
NspI RCATGY 1 cut(s) 61
PkrI GCNGC 2 cut(s) 34, 37
PspFI CCCAGC 1 cut(s) 69
RseI CAYNNNNRTG 2 cut(s) 62, 212
SatI GCNGC 2 cut(s) 33, 36
SduI GDGCHC 1 cut(s) 121
SetI ASST 1 cut(s) 71
SfaNI GCATC 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 62, 212
Sse9I AATT 3 cut(s) 21, 89, 103
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 164
TasI AATT 3 cut(s) 21, 89, 103
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 32, 35
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.