Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0019327

Physical Location & Seq

Genomic Coordinates Reverse (-)

5815135 .. 5815946

Gene Structure 812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAACCTTTATCACTTTGTAGTGTGAGAGTGTCTAATGAACTAGGCGCAGCTCACCCAAGAACGGCAAAGTTCTCGTTAGTAGTGGCCGTGGTGACTTCGTTTTTGCTCGGCGTTGCTCTCTCACTAGCACTCATCATCACCCGGGACATATATCCGTCTTTGTTTTCAAGCGATCCGGAGGTGAAAGCTCTCGTGAAGCATCTCACCCCATTGCTGGCGACGTGCATTGTTATAAACAGCATTCAACCAGTTCTCTCCGGGGTCGCCATTGGAGCAGGGTGGCAAGCTGTAGTGGGTTATGTGAACATAGTATGCTACTATGCATTTGGGGTTCCCTTGGGCCTAATCATGGGTTACAAGCTTCACGGGGGTTCGAAGGGTATTTGGACCGGAATGCTGTTGGGGACAGTCCTTCAAACTGGTATCCTTTTTTCGATGATTTGTAAAACCAGCTGGAACAAAGAGGTAGCGGTGGTGGTTGATCGATATCGAATATTCTGGTCTGCATCCATAGCTGAAGACAGGATAAGGAAATGGGGAGGGCAAATAGAATCGAAAGAGAACAGAGGAGGCTATACAGATTCACAAAACAACAACGGTGGTCATAAAGATTTGGATAAGAACGGAGACCATACAGATTTGAAAGAAAACGGCATAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

223

Amino Acids

24.04

Weight (kDa)

8.65

Isoelectric Point (pI)

19.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	8 - 116	5.9e-21	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019327)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g08720
rosa_chinensis	RchiOBHm_Chr4g0432901
rosa_laevigata	RLG00000031133
rosa_multiflora	Rmu_co8314537.1_g000001 Rmu_sc0009787.1_g000020
rosa_samantha	Rh4AG317600 Rh4BG325900
rosa_wichuraiana	Rw5G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	3 cut(s)	64, 217, 352
AgsI	TTSAA	4 cut(s)	171, 248, 419, 646
AjiI	CACGTC	1 cut(s)	225
AluBI	AGCT	6 cut(s)	53, 191, 290, 364, 456, 518
AluI	AGCT	6 cut(s)	53, 191, 290, 364, 456, 518
Alw26I	GTCTC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	2 cut(s)	87, 343
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	343, 390
AsuC2I	CCSGG	3 cut(s)	145, 146, 262
AsuHPI	GGTGA	5 cut(s)	47, 106, 133, 196, 199
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	74, 81
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciVI	GTATCC	1 cut(s)	437
BcnI	CCSGG	3 cut(s)	145, 146, 262
BcoDI	GTCTC	1 cut(s)	624
BfaI	CTAG	2 cut(s)	44, 128
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	145, 146, 262
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	343, 390
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	145, 146, 262
BmsI	GCATC	2 cut(s)	211, 518
BpiI	GAAGAC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	377
BpuMI	CCSGG	3 cut(s)	145, 146, 262
Bsa29I	ATCGAT	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	4 cut(s)	90, 144, 261, 339
BsaWI	WCCGGW	2 cut(s)	178, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 217, 352
Bse1I	ACTGG	2 cut(s)	251, 427
Bse3DI	GCAATG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	487
BseDI	CCNNGG	4 cut(s)	90, 144, 261, 339
BseGI	GGATG	1 cut(s)	509
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	3 cut(s)	64, 217, 352
BseMI	GCAATG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	251, 427
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	2 cut(s)	89, 345
BshVI	ATCGAT	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	145, 179, 261, 393
BslFI	GGGAC	2 cut(s)	161, 421
BslI	CCNNNNNNNGG	3 cut(s)	64, 217, 352
BsmAI	GTCTC	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	161, 421
BsmI	GAATGC	2 cut(s)	243, 402
BsnI	GGCC	2 cut(s)	89, 345
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	175, 484
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	2 cut(s)	89, 345
BspDI	ATCGAT	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	251, 427
BssECI	CCNNGG	4 cut(s)	90, 144, 261, 339
BssMI	GATC	2 cut(s)	175, 484
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	412, 602
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	219, 288
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	178, 487
BstMAI	GTCTC	1 cut(s)	624
BstMBI	GATC	2 cut(s)	175, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 515
BstSCI	CCNGG	3 cut(s)	143, 144, 260
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	89, 345
BsuTUI	ATCGAT	1 cut(s)	487
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	219, 288
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	343, 390
Cfr9I	CCCGGG	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	53, 89, 191, 290, 345, 364, 456, 518, 576
CviKI_1	RGCY	9 cut(s)	53, 89, 191, 290, 345, 364, 456, 518, 576
DpnI	GATC	2 cut(s)	177, 486
DpnII	GATC	2 cut(s)	175, 484
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	1 cut(s)	355
FaqI	GGGAC	2 cut(s)	161, 421
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	44, 128
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	89, 345
HapII	CCGG	4 cut(s)	145, 179, 261, 393
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	554, 584
HpaII	CCGG	4 cut(s)	145, 179, 261, 393
HphI	GGTGA	5 cut(s)	47, 106, 133, 196, 199
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	179, 196
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	373, 425
HpyCH4III	ACNGT	2 cut(s)	412, 602
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	4, 228, 326, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 515
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	175, 484
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	211, 518
MaeI	CTAG	2 cut(s)	44, 128
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	94, 356
MalI	GATC	2 cut(s)	177, 486
MboI	GATC	2 cut(s)	175, 484
MboII	GAAGA	1 cut(s)	533
MluCI	AATT	1 cut(s)	664
MnlI	CCTC	5 cut(s)	175, 460, 536, 563, 566
Mph1103I	ATGCAT	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	4 cut(s)	145, 179, 261, 393
MspR9I	CCNGG	3 cut(s)	145, 146, 262
Mva1269I	GAATGC	2 cut(s)	243, 402
MwoI	GCNNNNNNNGC	2 cut(s)	275, 515
NciI	CCSGG	3 cut(s)	145, 146, 262
NdeII	GATC	2 cut(s)	175, 484
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	336
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	377
PctI	GAATGC	2 cut(s)	243, 402
PfeI	GAWTC	2 cut(s)	554, 584
PkrI	GCNGC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	343, 390
PvuII	CAGCTG	1 cut(s)	456
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	175, 484
Sau96I	GGNCC	2 cut(s)	343, 390
ScrFI	CCNGG	3 cut(s)	145, 146, 262
SfaNI	GCATC	2 cut(s)	211, 518
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	664
SsiI	CCGC	1 cut(s)	473
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	44, 128
StyD4I	CCNGG	3 cut(s)	143, 144, 260
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	412, 602
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	5 cut(s)	377, 437, 487, 493, 557
TasI	AATT	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	554, 584
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	2 cut(s)	147, 642
TspMI	CCCGGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	144
XspI	CTAG	2 cut(s)	44, 128
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.