Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019327

Physical Location & Seq

Genomic Coordinates Forward (+)

62806221 .. 62834442

Gene Structure 28222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGTTGATTCTCTTTGCTGGATATCTAAAGAATGCAGAAGTTTCTGTGGATTGCCTATCCATATGCATGAACATATTGGGATGGACAGTCATGATGTCTTGTGGCATGAATGCAGCAATAAGTGTGAGAGTGTCGAATGAACTAGGAGCAGGACATCCAAGAACAGCAAAGTTCTCGCTAGTATTGGCCGTAATAACTTCATTTTTCATTGGTGTTCTCCTCTCACTCGTCCTCATACTCAGCAGAAACGAATATCCAGCCTTGTTTCCAAGTGATTCAGATGTTCAAGCGCTCGTGGTGCAGCTCACTCCCTTGCTGGCAACCTGCATTGTCATCAATAACATTCAACCTGTACTCTCTGGTGATGCAATTGGAGCAGGATGGCAAGCTTTTGTGGCTTATGTCAACATAGGCTGTTACCATATAGTTGGGGTACCATTCGGTTTACTCTTTGGGTACAAATTTGACTGGGGTGTTACGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

162

Amino Acids

17.36

Weight (kDa)

6.01

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 150	1.2e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019327)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g08720
rosa_chinensis	RchiOBHm_Chr4g0432901
rosa_laevigata	RLG00000031133
rosa_multiflora	Rmu_co8314537.1_g000001 Rmu_sc0009787.1_g000020
rosa_samantha	Rh4AG317600 Rh4BG325900
rosa_wichuraiana	Rw5G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
Acc65I	GGTACC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	3 cut(s)	357, 438, 461
AfeI	AGCGCT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	290, 350
AluBI	AGCT	2 cut(s)	307, 392
AluI	AGCT	2 cut(s)	307, 392
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	116, 304
ApoI	RAATTY	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	128, 316
BccI	CCATC	2 cut(s)	78, 378
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BfaI	CTAG	2 cut(s)	146, 182
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	117, 305
BlsI	GCNGC	2 cut(s)	118, 306
BmiI	GGNNCC	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	476
BseGI	GGATG	3 cut(s)	89, 157, 389
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	128, 316
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	436
BsmI	GAATGC	2 cut(s)	40, 118
BsnI	GGCC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	321, 390
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	89, 157, 389
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 377, 398
BstV1I	GCAGC	2 cut(s)	128, 316
BstXI	CCANNNNNNTGG	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	89, 157, 389
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	321, 390
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	356, 437, 460
CviAII	CATG	3 cut(s)	70, 94, 109
CviJI	RGCY	6 cut(s)	191, 263, 307, 392, 401, 417
CviKI_1	RGCY	6 cut(s)	191, 263, 307, 392, 401, 417
CviQI	GTAC	3 cut(s)	356, 437, 460
DdeI	CTNAG	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	71
FaeI	CATG	3 cut(s)	73, 97, 112
FatI	CATG	3 cut(s)	69, 93, 108
FauNDI	CATATG	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	117, 305
FokI	GGATG	3 cut(s)	96, 144, 396
Fsp4HI	GCNGC	2 cut(s)	117, 305
FspBI	CTAG	2 cut(s)	146, 182
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	117, 305
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	3 cut(s)	73, 97, 112
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	2 cut(s)	10, 278
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	409, 449
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	409, 449
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	6 cut(s)	38, 69, 116, 304, 330, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 377, 398
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	73, 97, 112
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	440
LmnI	GCTCC	2 cut(s)	149, 377
LpnPI	CCDG	9 cut(s)	6, 138, 273, 305, 340, 348, 366, 366, 457
Lsp1109I	GCAGC	2 cut(s)	128, 316
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	146, 182
MaeIII	GTNAC	2 cut(s)	419, 478
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	2 cut(s)	372, 464
MnlI	CCTC	2 cut(s)	233, 245
Mph1103I	ATGCAT	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	2 cut(s)	40, 118
MwoI	GCNNNNNNNGC	3 cut(s)	301, 377, 398
NdeI	CATATG	1 cut(s)	65
NlaIII	CATG	3 cut(s)	73, 97, 112
NlaIV	GGNNCC	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	71
PagI	TCATGA	1 cut(s)	93
PctI	GAATGC	2 cut(s)	40, 118
PfeI	GAWTC	2 cut(s)	10, 278
PkrI	GCNGC	2 cut(s)	118, 306
PspN4I	GGNNCC	1 cut(s)	438
RsaI	GTAC	3 cut(s)	357, 438, 461
RsaNI	GTAC	3 cut(s)	356, 437, 460
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	2 cut(s)	117, 305
SetI	ASST	4 cut(s)	309, 329, 355, 394
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	372, 464
SspMI	CTAG	2 cut(s)	146, 182
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	372, 464
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	10, 278
TseI	GCWGC	2 cut(s)	116, 304
TspDTI	ATGAA	5 cut(s)	86, 125, 156, 192, 199
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	2 cut(s)	146, 182
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.