Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019327

Physical Location & Seq

Genomic Coordinates Forward (+)

56996456 .. 56997882

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGTTGATTCTCTTTGCTGGATATCTAAAGAATGCAGAAGTTTCTGTGGACGGCCTATCCATATGCATGAACATATTGGGATGGACAATCATGATGTCTTTTGGCATGAATACAGCAATAAGTGTGAGGGTATCAAATGAACTAGGAGCAGGACATCCAAGAACAGCAAAGTTCTCGCTAGTAGTGGCTGTAATAACTTCATTTTTCATTGGTGTTCTCCTCTCACTCGTCCTCATACTCAGCAGAAACGAATATCCAGCCTTGTTTTCAAGTGATTCAGATGTTCAAGCGCTCGTGATGCAGCTCACTCCCTTGCTGGCAGCCTGCATTGTCATCAATAACATTCAACCTGTACTCTCTGGTGTTGCAATTGGAGCAGGATGGCAAGCTTTTGTGGCTTATGTCAACATAGGCTGTTACTATTTAATTGGGGTACCATTGGGTTTACTGTTTGGGTACAAATTTGACTGGGGTGTTATGGGGATTTGGATCGGAATGCTGTTAGGGACAGTTCTTCAGACTTGTATCCTTTTCTATTTGGTTTATAAGACCAACTGGGACAAAGAGGCTTCTATAGCTGAAGACAGGATAAGGAAATGGGGAGGCCAATCAGACAATCCCAAAGACACGGAGAGTAATGGCGCAAAAGTTTCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

220

Amino Acids

23.86

Weight (kDa)

5.76

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 150	1.1e-28	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019327)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g08720
rosa_chinensis	RchiOBHm_Chr4g0432901
rosa_laevigata	RLG00000031133
rosa_multiflora	Rmu_co8314537.1_g000001 Rmu_sc0009787.1_g000020
rosa_samantha	Rh4AG317600 Rh4BG325900
rosa_wichuraiana	Rw5G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	503, 603
AfaI	GTAC	3 cut(s)	357, 438, 461
AfeI	AGCGCT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	273, 290, 350
AluBI	AGCT	3 cut(s)	307, 392, 581
AluI	AGCT	3 cut(s)	307, 392, 581
AlwI	GGATC	1 cut(s)	500
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	2 cut(s)	55, 607
ApeKI	GCWGC	2 cut(s)	304, 323
ApoI	RAATTY	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	295, 647
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	316, 335
BccI	CCATC	2 cut(s)	78, 378
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	3 cut(s)	159, 193, 636
BciVI	GTATCC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	146, 182
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	2 cut(s)	305, 324
BlsI	GCNGC	2 cut(s)	306, 325
BmiI	GGNNCC	1 cut(s)	438
BmrI	ACTGGG	2 cut(s)	481, 568
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	2 cut(s)	481, 568
BpiI	GAAGAC	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	476, 563
Bse8I	GATNNNNATC	1 cut(s)	491
BseGI	GGATG	3 cut(s)	89, 157, 389
BseJI	GATNNNNATC	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	476, 563
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	316, 335
BshFI	GGCC	2 cut(s)	57, 609
BshNI	GGYRCC	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	523, 575
BsmFI	GGGAC	2 cut(s)	523, 575
BsmI	GAATGC	2 cut(s)	40, 504
BsnI	GGCC	2 cut(s)	57, 609
Bsp143I	GATC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	57, 609
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	476, 563
BssMI	GATC	1 cut(s)	492
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	453, 514
BstC8I	GCNNGC	3 cut(s)	321, 328, 390
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	89, 157, 389
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	295, 647
BstKTI	GATC	1 cut(s)	495
BstMBI	GATC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 377, 398, 578
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	316, 335
BstV2I	GAAGAC	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	57, 609
BtsCI	GGATG	3 cut(s)	89, 157, 389
Cac8I	GCNNGC	3 cut(s)	321, 328, 390
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	2 cut(s)	295, 647
Csp6I	GTAC	3 cut(s)	356, 437, 460
CviAII	CATG	3 cut(s)	70, 94, 109
CviQI	GTAC	3 cut(s)	356, 437, 460
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	503, 603
EcoRV	GATATC	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	71
FaeI	CATG	3 cut(s)	73, 97, 112
FaqI	GGGAC	2 cut(s)	523, 575
FatI	CATG	3 cut(s)	69, 93, 108
FauNDI	CATATG	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	305, 324
FokI	GGATG	3 cut(s)	96, 144, 396
Fsp4HI	GCNGC	2 cut(s)	305, 324
FspBI	CTAG	2 cut(s)	146, 182
GlaI	GCGC	2 cut(s)	294, 646
GluI	GCNGC	2 cut(s)	305, 324
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	57, 609
HhaI	GCGC	2 cut(s)	295, 647
Hin1II	CATG	3 cut(s)	73, 97, 112
Hin6I	GCGC	2 cut(s)	293, 645
HinP1I	GCGC	2 cut(s)	293, 645
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	2 cut(s)	10, 278
Hpy166II	GTNNAC	3 cut(s)	52, 409, 449
Hpy188I	TCNGA	4 cut(s)	283, 497, 522, 616
Hpy188III	TCNNGA	2 cut(s)	94, 298
Hpy8I	GTNNAC	3 cut(s)	52, 409, 449
HpyCH4III	ACNGT	2 cut(s)	453, 514
HpyCH4V	TGCA	5 cut(s)	38, 69, 304, 330, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 377, 398, 578
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	73, 97, 112
HspAI	GCGC	2 cut(s)	293, 645
KpnI	GGTACC	1 cut(s)	440
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	149, 377
Lsp1109I	GCAGC	2 cut(s)	316, 335
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	146, 182
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	494
MboI	GATC	1 cut(s)	492
MboII	GAAGA	2 cut(s)	509, 596
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	3 cut(s)	372, 429, 464
MnlI	CCTC	5 cut(s)	123, 233, 245, 562, 599
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	2 cut(s)	428, 661
MslI	CAYNNNNRTG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	2 cut(s)	40, 504
MwoI	GCNNNNNNNGC	4 cut(s)	301, 377, 398, 578
NdeI	CATATG	1 cut(s)	65
NdeII	GATC	1 cut(s)	492
NlaIII	CATG	3 cut(s)	73, 97, 112
NlaIV	GGNNCC	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	71
PagI	TCATGA	1 cut(s)	93
PctI	GAATGC	2 cut(s)	40, 504
PfeI	GAWTC	2 cut(s)	10, 278
PkrI	GCNGC	2 cut(s)	306, 325
PsiI	TTATAA	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	438
RsaI	GTAC	3 cut(s)	357, 438, 461
RsaNI	GTAC	3 cut(s)	356, 437, 460
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	428, 661
SatI	GCNGC	2 cut(s)	305, 324
Sau3AI	GATC	1 cut(s)	492
SetI	ASST	4 cut(s)	309, 355, 394, 583
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	372, 429, 464
SspMI	CTAG	2 cut(s)	146, 182
TaaI	ACNGT	2 cut(s)	453, 514
TaqI	TCGA	1 cut(s)	656
TasI	AATT	3 cut(s)	372, 429, 464
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	10, 278
Tru1I	TTAA	2 cut(s)	428, 661
Tru9I	TTAA	2 cut(s)	428, 661
TseI	GCWGC	2 cut(s)	304, 323
TspDTI	ATGAA	5 cut(s)	86, 125, 156, 192, 199
TspGWI	ACGGA	1 cut(s)	647
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	2 cut(s)	146, 182
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.