Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314537.1

Orthogroup ID

OG0019327

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 618

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314537.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ctggcaacctgcattgtcatcaataacgttcaacctgtactctctggtgttgcaattggagcaggatggcaagcttttgtggcttatgtcaacataggctgttactatgtagttggggtaccattgggtttactctttgggtacaaatttgactggggtgttatggggatttggactggaatgctgttagggacagttcttcagacttgtgtccttttctatttggtttataagaccaactggaacaaagaggcttctatagctgaagacaggataaggaaatggggaggccaatcaaacaatcccaaagacgcggagaataatggcgcaaaagtttcgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

114

Amino Acids

12.42

Weight (kDa)

8.5

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019327)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g08720
rosa_chinensis	RchiOBHm_Chr4g0432901
rosa_laevigata	RLG00000031133
rosa_multiflora	Rmu_co8314537.1_g000001 Rmu_sc0009787.1_g000020
rosa_samantha	Rh4AG317600 Rh4BG325900
rosa_wichuraiana	Rw5G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	314
AciI	CCGC	1 cut(s)	314
AclI	AACGTT	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	185, 285
AfaI	GTAC	3 cut(s)	39, 120, 143
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	74, 263
AluI	AGCT	2 cut(s)	74, 263
AoxI	GGCC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	1 cut(s)	60
BcgI	CGANNNNNNTGC	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	273
Bse1I	ACTGG	3 cut(s)	158, 181, 245
BseGI	GGATG	1 cut(s)	71
BseNI	ACTGG	3 cut(s)	158, 181, 245
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	158, 181, 245
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 80, 260
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	71
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	329
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	38, 119, 142
CviJI	RGCY	6 cut(s)	74, 83, 99, 254, 263, 291
CviKI_1	RGCY	6 cut(s)	74, 83, 99, 254, 263, 291
CviQI	GTAC	3 cut(s)	38, 119, 142
Eco57I	CTGAAG	2 cut(s)	185, 285
FaiI	YATR	6 cut(s)	87, 95, 108, 164, 231, 260
FaqI	GGGAC	1 cut(s)	205
FokI	GGATG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	291
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	91, 131
Hpy188I	TCNGA	1 cut(s)	204
Hpy8I	GTNNAC	2 cut(s)	91, 131
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	12, 53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 80, 260
HpySE526I	ACGT	1 cut(s)	27
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	8 cut(s)	22, 30, 48, 48, 139, 162, 226, 256
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	191, 278
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	2 cut(s)	54, 146
MnlI	CCTC	2 cut(s)	244, 281
MseI	TTAA	1 cut(s)	343
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	186
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	59, 80, 260
NlaIV	GGNNCC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	186
PshAI	GACNNNNGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	120
RsaI	GTAC	3 cut(s)	39, 120, 143
RsaNI	GTAC	3 cut(s)	38, 119, 142
SaqAI	TTAA	1 cut(s)	343
SetI	ASST	5 cut(s)	11, 30, 37, 76, 265
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	54, 146
SsiI	CCGC	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	54, 146
TatI	WGTACW	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
XapI	RAATTY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.