Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019327

Physical Location & Seq

Genomic Coordinates Forward (+)

49139545 .. 49163198

Gene Structure 23654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGGAGAACAAACAGCCACTGCTGTCGCCAAGAGACGAGGTGGTGGGAGTTCCACAGCATCATCAACCGATGCATGACAACCTAGATTCCTTCCCTGCACCCGCAAACCCTTCTTTCATTTCCAGCACTACCTTCAATCCCGACTCCGACGACATCCCACCCATCAATGGCGTCCGCGACTTCTTCCGAGAGTTCAACCGAGAATCGAAGAAGCTCTGGTTTCTCGCCGGCCCCGCCATCTTCACTTCACTATGCCAGTACTCTCTCGGCGCCGTCACTCAAGTCTTCGCCGGCCAGGTCAGCACCCTCGACCTCGCCGCCGTCTCCATCGAGAACTCGGTCATCGCTGGATTCTGCTTCGGCGCTTTGCTCACTCCCTTGCTGGCAACCTGCATTGTCATCAATAACATTCAACCTGTACTCTCTGGTGTTGCAATTGGAGCAGGATGGCAAGCTTTTGTGGCTTATGTCAACATAGGCTGTTACTATATAGTTGGGGTACCATTGGGTTTACTCTTTGGGTACAAATTTGACTGGGGTGTTATGGGGATTTGGACCGGAATGCTGTTAGGGACAGTTCTTCAGACTTGTGTCCTTTTCTATTTGGTTTATAAGACCAACTGGAACAAAGAGGCTTCTATAGCTGAAGACAGGATAAGGAAATGGGGAGGCCAATCAGACAATCCCAAAGACACGGAGAATAATGGCGCAAAAGTTTCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

242

Amino Acids

26.46

Weight (kDa)

4.99

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019327)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g08720
rosa_chinensis	RchiOBHm_Chr4g0432901
rosa_laevigata	RLG00000031133
rosa_multiflora	Rmu_co8314537.1_g000001 Rmu_sc0009787.1_g000020
rosa_samantha	Rh4AG317600 Rh4BG325900
rosa_wichuraiana	Rw5G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	401
Acc65I	GGTACC	1 cut(s)	502
AccB1I	GGYRCC	2 cut(s)	272, 502
AccII	CGCG	1 cut(s)	180
AciI	CCGC	4 cut(s)	105, 178, 237, 321
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	2 cut(s)	569, 669
AcyI	GRCGYC	2 cut(s)	174, 273
AfaI	GTAC	4 cut(s)	263, 423, 504, 527
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	139, 199, 416
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	217, 458, 647
AluI	AGCT	3 cut(s)	217, 458, 647
Alw26I	GTCTC	2 cut(s)	30, 331
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	232, 295, 673
ApoI	RAATTY	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	502
AspLEI	GCGC	3 cut(s)	275, 368, 713
AspS9I	GGNCC	2 cut(s)	233, 558
AvaII	GGWCC	1 cut(s)	558
BanI	GGYRCC	2 cut(s)	272, 502
BbsI	GAAGAC	2 cut(s)	280, 657
BccI	CCATC	4 cut(s)	173, 248, 338, 444
BceAI	ACGGC	2 cut(s)	260, 308
BcgI	CGANNNNNNTGC	1 cut(s)	702
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	30, 331
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	2 cut(s)	276, 369
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	233, 558
BmiI	GGNNCC	3 cut(s)	235, 274, 504
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	63, 70
BmuI	ACTGGG	1 cut(s)	547
BoxI	GACNNNNGTC	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	280, 657
BpuEI	CTTGAG	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	174, 273
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	2 cut(s)	230, 293
Bse1I	ACTGG	3 cut(s)	259, 542, 629
BseBI	CCWGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	156, 455
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	259, 542, 629
BseRI	GAGGAG	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	234, 297, 675
BshNI	GGYRCC	2 cut(s)	272, 502
BsiSI	CCGG	3 cut(s)	231, 294, 561
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	30, 331
BsmBI	CGTCTC	2 cut(s)	30, 331
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	234, 297, 675
BspACI	CCGC	4 cut(s)	105, 178, 237, 321
BspANI	GGCC	3 cut(s)	234, 297, 675
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	235, 274, 504
BspMI	ACCTGC	1 cut(s)	401
BspT107I	GGYRCC	2 cut(s)	272, 502
BsrFI	RCCGGY	2 cut(s)	230, 293
BsrI	ACTGG	3 cut(s)	259, 542, 629
BssAI	RCCGGY	2 cut(s)	230, 293
BssNI	GRCGYC	2 cut(s)	174, 273
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	580
BstACI	GRCGYC	2 cut(s)	174, 273
BstC8I	GCNNGC	4 cut(s)	232, 295, 387, 456
BstF5I	GGATG	2 cut(s)	156, 455
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	2 cut(s)	276, 369
BstHHI	GCGC	3 cut(s)	275, 368, 713
BstMAI	GTCTC	2 cut(s)	30, 331
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 303, 443, 464, 644
BstNI	CCWGG	1 cut(s)	299
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	180
BstV2I	GAAGAC	2 cut(s)	280, 657
BsuRI	GGCC	3 cut(s)	234, 297, 675
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	156, 455
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	4 cut(s)	232, 295, 387, 456
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	3 cut(s)	275, 368, 713
Cfr10I	RCCGGY	2 cut(s)	230, 293
Cfr13I	GGNCC	2 cut(s)	233, 558
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	262, 422, 503, 526
CviAII	CATG	1 cut(s)	77
CviQI	GTAC	4 cut(s)	262, 422, 503, 526
DinI	GGCGCC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	2 cut(s)	569, 669
EcoRII	CCWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
Esp3I	CGTCTC	2 cut(s)	30, 331
FaeI	CATG	1 cut(s)	80
FaiI	YATR	9 cut(s)	78, 256, 471, 479, 492, 494, 548, 615, 644
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	1 cut(s)	76
FauI	CCCGC	2 cut(s)	112, 244
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	143, 462
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	3 cut(s)	274, 367, 712
GluI	GCNGC	1 cut(s)	321
HaeII	RGCGCY	2 cut(s)	276, 369
HaeIII	GGCC	3 cut(s)	234, 297, 675
HapII	CCGG	3 cut(s)	231, 294, 561
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	275, 368, 713
Hin1I	GRCGYC	2 cut(s)	174, 273
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	3 cut(s)	273, 366, 711
HinP1I	GCGC	3 cut(s)	273, 366, 711
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	4 cut(s)	89, 146, 206, 354
HpaII	CCGG	3 cut(s)	231, 294, 561
Hpy166II	GTNNAC	2 cut(s)	475, 515
Hpy188I	TCNGA	4 cut(s)	151, 191, 588, 682
Hpy188III	TCNNGA	2 cut(s)	143, 334
Hpy8I	GTNNAC	2 cut(s)	475, 515
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	103, 123, 145
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	4 cut(s)	76, 101, 396, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 303, 443, 464, 644
Hsp92I	GRCGYC	2 cut(s)	174, 273
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	3 cut(s)	273, 366, 711
KasI	GGCGCC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	506
KroI	GCCGGC	2 cut(s)	230, 293
KroNI	GCCGGC	2 cut(s)	232, 295
LmnI	GCTCC	1 cut(s)	443
LweI	GCATC	2 cut(s)	63, 70
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	277, 485
MboII	GAAGA	6 cut(s)	178, 223, 235, 280, 575, 662
MfeI	CAATTG	1 cut(s)	438
MluCI	AATT	2 cut(s)	438, 530
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	34, 320, 326, 628, 665
Mph1103I	ATGCAT	1 cut(s)	78
MroNI	GCCGGC	2 cut(s)	230, 293
MseI	TTAA	1 cut(s)	727
MspI	CCGG	3 cut(s)	231, 294, 561
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	236, 303, 443, 464, 644
NaeI	GCCGGC	2 cut(s)	232, 295
NarI	GGCGCC	1 cut(s)	273
NgoMIV	GCCGGC	2 cut(s)	230, 293
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	3 cut(s)	235, 274, 504
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	570
PdiI	GCCGGC	2 cut(s)	232, 295
PfeI	GAWTC	3 cut(s)	89, 206, 354
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	593
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	235, 274, 504
PspPI	GGNCC	2 cut(s)	233, 558
PstNI	CAGNNNCTG	1 cut(s)	22
RsaI	GTAC	4 cut(s)	263, 423, 504, 527
RsaNI	GTAC	4 cut(s)	262, 422, 503, 526
SaqAI	TTAA	1 cut(s)	727
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	233, 558
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	63, 70
SfcI	CTRYAG	1 cut(s)	642
SfoI	GGCGCC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	438, 530
SsiI	CCGC	4 cut(s)	105, 178, 237, 321
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	209, 312, 333, 722
TaqII	GACCGA	1 cut(s)	331
TasI	AATT	2 cut(s)	438, 530
TatI	WGTACW	2 cut(s)	261, 421
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	89, 206, 354
Tru1I	TTAA	1 cut(s)	727
Tru9I	TTAA	1 cut(s)	727
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	1 cut(s)	530
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.