Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0020166

Physical Location & Seq

Genomic Coordinates Forward (+)

21647963 .. 21648439

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATTTTCAGCCAAATACTTCTCTTCATCTAAGCCTACCCAACAACGAACCGAACTTGGAGCTTGTCCTGGAGCCATCATTTACTTCTTCCTCATCTTCTTCTTTTAGTCCGTCATCGGAACCCAAGCGCATGTTTTCATGCAACTACTGCCAAAGAAAGTTTTACAGCTCCCAAGCACTTGGAGGCCACCAAAATGCTCACAAACTCGAGCGCACTTTAGCCAAGAAAAGCAGAGAGCGGCTAAGTTCCGCGGCCCAAGCTCATGGTAGCATGACCCAACGACCCGTACCTAACTACAGCTGCAGCAGCGATTCAGGTGCTAGTCATGCAAGGGAGTTTCCGCAGGCACATCTTGGTGGGTTGAAAGTACATCAAGGACATGCCGGTAGGTTTGTTGGTCAAATGAACTGTGGATACAGACCTGAGAATGCTGAGGAGGGTATTTGCCACCTTGACTTATCTCTGAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.41

Weight (kDa)

8.67

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57520
malus_domestica	MD00G1113500.v1.1 MD13G1269700.v1.1
prunus_persica	Prupe.1G088000_v2.0.a1
pyrus_communis	pycom13g22270 pycom16g22100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	1 cut(s)	254
AciI	CCGC	4 cut(s)	241, 252, 254, 344
AfaI	GTAC	2 cut(s)	291, 372
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	64, 171, 263, 303
AluI	AGCT	4 cut(s)	64, 171, 263, 303
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	187, 255
ApeKI	GCWGC	3 cut(s)	303, 306, 309
AspLEI	GCGC	2 cut(s)	132, 216
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	290, 318, 321
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	298, 304
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	5 cut(s)	242, 255, 304, 307, 310
BlsI	GCNGC	5 cut(s)	243, 256, 305, 308, 311
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	75, 123
BmrFI	CCNGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	417, 426, 458
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	290, 318, 321
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	189, 257
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	189, 257
BsoBI	CYCGRG	1 cut(s)	209
BspACI	CCGC	4 cut(s)	241, 252, 254, 344
BspANI	GGCC	2 cut(s)	189, 257
BspCNI	CTCAG	3 cut(s)	418, 427, 459
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	75, 123
BspMAI	CTGCAG	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	32, 245, 426, 435, 467
BstDSI	CCRYGG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	132, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 260, 309, 329
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	2 cut(s)	136, 386
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	2 cut(s)	298, 304
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	290, 318, 321
BstXI	CCANNNNNNTGG	2 cut(s)	182, 266
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	189, 257
BtgI	CCRYGG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	2 cut(s)	132, 216
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	256
Cfr42I	CCGCGG	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	290, 371
CviAII	CATG	6 cut(s)	133, 141, 266, 274, 329, 383
CviQI	GTAC	2 cut(s)	290, 371
DdeI	CTNAG	5 cut(s)	32, 245, 426, 435, 467
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	6 cut(s)	136, 144, 269, 277, 332, 386
FaiI	YATR	6 cut(s)	134, 142, 267, 275, 330, 384
FatI	CATG	6 cut(s)	132, 140, 265, 273, 328, 382
Fnu4HI	GCNGC	5 cut(s)	242, 255, 304, 307, 310
Fsp4HI	GCNGC	5 cut(s)	242, 255, 304, 307, 310
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	131, 215
GluI	GCNGC	5 cut(s)	242, 255, 304, 307, 310
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	189, 257
HapII	CCGG	1 cut(s)	387
HhaI	GCGC	2 cut(s)	132, 216
Hin1II	CATG	6 cut(s)	136, 144, 269, 277, 332, 386
Hin6I	GCGC	2 cut(s)	130, 214
HinP1I	GCGC	2 cut(s)	130, 214
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	121, 468
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	144, 306, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 260, 309, 329
HpyF3I	CTNAG	5 cut(s)	32, 245, 426, 435, 467
Hsp92II	CATG	6 cut(s)	136, 144, 269, 277, 332, 386
HspAI	GCGC	2 cut(s)	130, 214
KspI	CCGCGG	1 cut(s)	255
LmnI	GCTCC	3 cut(s)	61, 73, 176
LpnPI	CCDG	6 cut(s)	56, 83, 303, 332, 400, 438
Lsp1109I	GCAGC	3 cut(s)	290, 318, 321
MaeI	CTAG	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	241
MboII	GAAGA	4 cut(s)	17, 81, 90, 93
MnlI	CCTC	5 cut(s)	103, 179, 430, 433, 462
MslI	CAYNNNNRTG	2 cut(s)	195, 357
MspA1I	CMGCKG	2 cut(s)	254, 303
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	150, 260, 309, 329
NlaIII	CATG	6 cut(s)	136, 144, 269, 277, 332, 386
NlaIV	GGNNCC	2 cut(s)	75, 123
NspI	RCATGY	2 cut(s)	136, 386
PaeR7I	CTCGAG	1 cut(s)	209
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	243, 256, 305, 308, 311
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	75, 123
PspPI	GGNCC	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	2 cut(s)	291, 372
RsaNI	GTAC	2 cut(s)	290, 371
RseI	CAYNNNNRTG	2 cut(s)	195, 357
SacII	CCGCGG	1 cut(s)	255
SatI	GCNGC	5 cut(s)	242, 255, 304, 307, 310
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	9 cut(s)	66, 173, 265, 295, 305, 322, 395, 427, 456
SfcI	CTRYAG	2 cut(s)	298, 304
Sfr274I	CTCGAG	1 cut(s)	209
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	195, 357
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	4 cut(s)	241, 252, 254, 344
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	2 cut(s)	244, 257
TfiI	GAWTC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	303, 306, 309
TspDTI	ATGAA	3 cut(s)	17, 129, 422
TspGWI	ACGGA	1 cut(s)	102
XceI	RCATGY	2 cut(s)	136, 386
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.