Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0019831

Physical Location & Seq

Genomic Coordinates Forward (+)

25435348 .. 25437203

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGAACCCTGTCGAAGAAAAATGTCTTTCCCCGCGAGCTGGAACCTTGTTTCCTCAGGCCAAAGAGAAGTGGGAATCTTCGGTTCTTGAATTTGGTTTGTTTTCTGAAACAGAGCAAGCCCGTGATCAGACCGATCATTTGCCTCTCGTCAAAAACCCGGACAGAATTGGAGATGGCAACCCAGGCATTGGCTACCAGAACGAGATGGATACCTTGGTCTCTCATCGTCAACACGGAGTCCTTGCGACAATCTCTTGAAGACCTGATGATAGTTGGATGCCCTGGTTTTTCTTCGTTACTGGAGACGGAGTCGCTGTCCTCGCTTTGGAGGCTTGAGGAGATTGATGAGGCACTTCAGAGAGAGATCCAAGCTGCATTTCGTACGGATGAGATCCGAAGAACAGCTCCCACTCCACAAGATGAGATGAGAGCGGGGATGAGCTATTTCCATGAGACAATTTGGAAGGGTGTCCCAAAATTTCTCCGTCGTGTGGATACAGCTTTGAAGAATATTGGGATTAATGAGCGTGTTCCCCATAACGCCCCACTTATTCAGTTTTCTTCCTGGATGGGCGGTGATCGTGATGGTAATCCAAGAGTAACTCCCGAGGTCACAAGGGACGTTTGCCTACTGGCTAGAATGATGGCTGCAAACTTGTACTATTCTCAGATAGAGGATCTTATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAACTCCGTGTTTGTGCAGATGTACTTCACAGGTACAAGCTCCAGCGCACTCCCTCCGCAGCAAGCGGCGTCCCTTGTAGCAAACAGCAACAGCAGTTCAATAGCTCTCCAGCGACGTCGTCTGCAGCGGTGATTCAGCTCAAGCACCTCCAGCACAAAAGCCTCCTGCAAATCCTGCAGTTTATGGGCAAACCGCTCAGTCACCCAGCACTCCAGGAGGCTATGGTTAGTCAGCACCTGTGCAGCCAGGATACCCGCATTCTCAGCCTCCGGCTTCTGCACTTCCGCCATGGTTGCTGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

341

Amino Acids

38.98

Weight (kDa)

9.27

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	105 - 246	9.5e-47	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019831)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g24170
rosa_multiflora	Rmu_sc0000516.1_g000072 Rmu_sc0003070.1_g000004
rosa_samantha	Rh2CG533600 Rh5BG457700 Rh5CG479700
rosa_wichuraiana	Rw2G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	836
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccBSI	CCGCTC	2 cut(s)	434, 913
AccII	CGCG	1 cut(s)	36
AciI	CCGC	9 cut(s)	34, 434, 576, 774, 783, 845, 911, 973, 1003
AclWI	GGATC	3 cut(s)	361, 388, 687
AcsI	RAATTY	2 cut(s)	91, 479
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	786, 833
AfaI	GTAC	4 cut(s)	385, 662, 741, 752
AfiI	CCNNNNNNNGG	4 cut(s)	40, 190, 327, 493
AgsI	TTSAA	4 cut(s)	91, 260, 508, 817
AjnI	CCWGG	5 cut(s)	183, 283, 566, 930, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	8 cut(s)	40, 374, 407, 444, 503, 757, 822, 856
AluI	AGCT	8 cut(s)	40, 374, 407, 444, 503, 757, 822, 856
Alw26I	GTCTC	3 cut(s)	225, 299, 449
AlwI	GGATC	3 cut(s)	361, 388, 687
AlwNI	CAGNNNCTG	1 cut(s)	955
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	7 cut(s)	374, 650, 708, 776, 842, 960, 1014
ApoI	RAATTY	2 cut(s)	91, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	708, 765
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	590, 859, 911
AvaI	CYCGRG	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	203, 236
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	7 cut(s)	361, 637, 695, 788, 854, 972, 1001
BccI	CCATC	5 cut(s)	169, 201, 565, 581, 640
BciT130I	CCWGG	5 cut(s)	185, 285, 568, 932, 965
BciVI	GTATCC	3 cut(s)	204, 490, 961
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	225, 299, 449
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	2 cut(s)	840, 893
BfoI	RGCGCY	1 cut(s)	709
BfuI	GTATCC	3 cut(s)	204, 490, 961
BisI	GCNGC	8 cut(s)	375, 651, 709, 777, 784, 843, 961, 1015
BlsI	GCNGC	8 cut(s)	376, 652, 710, 778, 785, 844, 962, 1016
Bme1390I	CCNGG	6 cut(s)	160, 185, 285, 568, 932, 965
BmeT110I	CYCGRG	1 cut(s)	608
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	6 cut(s)	160, 185, 285, 568, 932, 965
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	5 cut(s)	323, 743, 810, 851, 914
BpuEI	CTTGAG	2 cut(s)	356, 842
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	2 cut(s)	786, 833
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	183, 215, 283, 609, 1006
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 302, 326, 332
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 190, 327, 493
Bse1I	ACTGG	2 cut(s)	306, 639
Bse21I	CCTNAGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	5 cut(s)	185, 285, 568, 932, 965
BseDI	CCNNGG	5 cut(s)	183, 215, 283, 609, 1006
BseGI	GGATG	4 cut(s)	284, 394, 444, 576
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	4 cut(s)	40, 190, 327, 493
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	4 cut(s)	70, 683, 928, 994
BseNI	ACTGG	2 cut(s)	306, 639
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	7 cut(s)	361, 637, 695, 788, 854, 972, 1001
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	3 cut(s)	753, 979, 980
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	160, 988
BsiWI	CGTACG	1 cut(s)	383
BslFI	GGGAC	3 cut(s)	458, 635, 773
BslI	CCNNNNNNNGG	4 cut(s)	40, 190, 327, 493
BsmAI	GTCTC	3 cut(s)	225, 299, 449
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	3 cut(s)	458, 635, 773
BsmI	GAATGC	1 cut(s)	975
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	608
Bsp143I	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
Bsp19I	CCATGG	1 cut(s)	1006
BspACI	CCGC	9 cut(s)	34, 434, 576, 774, 783, 845, 911, 973, 1003
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	4 cut(s)	69, 682, 927, 993
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	2 cut(s)	844, 897
BspPI	GGATC	3 cut(s)	361, 388, 687
BspTNI	GGTCTC	1 cut(s)	225
BsrBI	CCGCTC	2 cut(s)	434, 913
BsrDI	GCAATG	1 cut(s)	718
BsrI	ACTGG	2 cut(s)	306, 639
BssECI	CCNNGG	5 cut(s)	183, 215, 283, 609, 1006
BssMI	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
BssNI	GRCGYC	2 cut(s)	786, 833
BssT1I	CCWWGG	2 cut(s)	215, 1006
Bst2UI	CCWGG	5 cut(s)	185, 285, 568, 932, 965
BstACI	GRCGYC	2 cut(s)	786, 833
BstAPI	GCANNNNNTGC	1 cut(s)	892
BstC8I	GCNNGC	3 cut(s)	38, 119, 781
BstDEI	CTNAG	4 cut(s)	56, 669, 914, 980
BstDSI	CCRYGG	1 cut(s)	1006
BstF5I	GGATG	4 cut(s)	284, 394, 444, 576
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	2 cut(s)	708, 765
BstKTI	GATC	6 cut(s)	129, 138, 369, 396, 583, 682
BstMAI	GTCTC	3 cut(s)	225, 299, 449
BstMBI	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 322, 331, 868, 892, 981, 1011
BstNI	CCWGG	5 cut(s)	185, 285, 568, 932, 965
BstSCI	CCNGG	6 cut(s)	158, 183, 283, 566, 930, 963
BstSFI	CTRYAG	2 cut(s)	840, 893
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	7 cut(s)	361, 637, 695, 788, 854, 972, 1001
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	3 cut(s)	366, 393, 679
BstYI	RGATCY	3 cut(s)	366, 393, 679
Bsu36I	CCTNAGG	1 cut(s)	56
BsuI	GTATCC	3 cut(s)	204, 490, 961
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	1006
BtsCI	GGATG	4 cut(s)	284, 394, 444, 576
Cac8I	GCNNGC	3 cut(s)	38, 119, 781
CaiI	CAGNNNCTG	1 cut(s)	955
CfoI	GCGC	2 cut(s)	708, 765
CseI	GACGC	1 cut(s)	775
Csp6I	GTAC	4 cut(s)	384, 661, 740, 751
CviAII	CATG	2 cut(s)	452, 1007
CviQI	GTAC	4 cut(s)	384, 661, 740, 751
DdeI	CTNAG	4 cut(s)	56, 669, 914, 980
DpnI	GATC	6 cut(s)	128, 137, 368, 395, 582, 681
DpnII	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
EciI	GGCGGA	1 cut(s)	992
Eco130I	CCWWGG	2 cut(s)	215, 1006
Eco31I	GGTCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	608
EcoRII	CCWGG	5 cut(s)	183, 283, 566, 930, 963
EcoT14I	CCWWGG	2 cut(s)	215, 1006
ErhI	CCWWGG	2 cut(s)	215, 1006
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	455, 1010
FaiI	YATR	7 cut(s)	453, 540, 686, 701, 902, 941, 1008
FaqI	GGGAC	3 cut(s)	458, 635, 773
FatI	CATG	2 cut(s)	451, 1006
FauI	CCCGC	3 cut(s)	41, 427, 980
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	8 cut(s)	375, 651, 709, 777, 784, 843, 961, 1015
FokI	GGATG	4 cut(s)	291, 401, 451, 583
Fsp4HI	GCNGC	8 cut(s)	375, 651, 709, 777, 784, 843, 961, 1015
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	2 cut(s)	707, 764
GluI	GCNGC	8 cut(s)	375, 651, 709, 777, 784, 843, 961, 1015
GsaI	CCCAGC	1 cut(s)	926
GsuI	CTGGAG	5 cut(s)	323, 743, 810, 851, 914
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	160, 988
HgaI	GACGC	1 cut(s)	775
HhaI	GCGC	2 cut(s)	708, 765
Hin1I	GRCGYC	2 cut(s)	786, 833
Hin1II	CATG	2 cut(s)	455, 1010
Hin6I	GCGC	2 cut(s)	706, 763
HinP1I	GCGC	2 cut(s)	706, 763
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	4 cut(s)	76, 239, 311, 850
HpaII	CCGG	2 cut(s)	160, 988
HphI	GGTGA	3 cut(s)	590, 859, 911
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	108, 131, 360, 398, 672
Hpy188III	TCNNGA	4 cut(s)	88, 257, 584, 608
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	492, 835, 838
HpyAV	CCTTC	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	624, 833
HpyCH4V	TGCA	9 cut(s)	377, 653, 711, 734, 842, 886, 895, 960, 997
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 322, 331, 868, 892, 981, 1011
HpyF3I	CTNAG	4 cut(s)	56, 669, 914, 980
HpySE526I	ACGT	2 cut(s)	624, 833
Hsp92I	GRCGYC	2 cut(s)	786, 833
Hsp92II	CATG	2 cut(s)	455, 1010
HspAI	GCGC	2 cut(s)	706, 763
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
LmnI	GCTCC	2 cut(s)	412, 762
Lsp1109I	GCAGC	7 cut(s)	361, 637, 695, 788, 854, 972, 1001
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	2 cut(s)	624, 833
MaeIII	GTNAC	4 cut(s)	297, 601, 613, 917
MalI	GATC	6 cut(s)	128, 137, 368, 395, 582, 681
MbiI	CCGCTC	2 cut(s)	434, 913
MboI	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
MboII	GAAGA	7 cut(s)	28, 71, 272, 285, 411, 520, 555
MflI	RGATCY	3 cut(s)	366, 393, 679
MluCI	AATT	4 cut(s)	91, 167, 459, 479
MlyI	GAGTC	2 cut(s)	248, 320
MmeI	TCCRAC	1 cut(s)	256
MseI	TTAA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	2 cut(s)	160, 988
MspR9I	CCNGG	6 cut(s)	160, 185, 285, 568, 932, 965
Mva1269I	GAATGC	1 cut(s)	975
MvaI	CCWGG	5 cut(s)	185, 285, 568, 932, 965
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	7 cut(s)	185, 322, 331, 868, 892, 981, 1011
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	1006
NdeII	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
NlaIII	CATG	2 cut(s)	455, 1010
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	613, 917
PctI	GAATGC	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	76, 850
Pfl23II	CGTACG	1 cut(s)	383
PflFI	GACNNNGTC	2 cut(s)	310, 835
PflMI	CCANNNNNTGG	1 cut(s)	190
PfoI	TCCNGGA	2 cut(s)	566, 930
PkrI	GCNGC	8 cut(s)	376, 652, 710, 778, 785, 844, 962, 1016
PleI	GAGTC	2 cut(s)	247, 319
PpsI	GAGTC	2 cut(s)	247, 319
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	5 cut(s)	183, 283, 566, 930, 963
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	5 cut(s)	183, 283, 566, 930, 963
PspLI	CGTACG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	45
PstI	CTGCAG	2 cut(s)	844, 897
PstNI	CAGNNNCTG	1 cut(s)	955
PsuI	RGATCY	3 cut(s)	366, 393, 679
PsyI	GACNNNGTC	2 cut(s)	310, 835
RsaI	GTAC	4 cut(s)	385, 662, 741, 752
RsaNI	GTAC	4 cut(s)	384, 661, 740, 751
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	8 cut(s)	375, 651, 709, 777, 784, 843, 961, 1015
Sau3AI	GATC	6 cut(s)	126, 135, 366, 393, 580, 679
SchI	GAGTC	2 cut(s)	248, 320
ScrFI	CCNGG	6 cut(s)	160, 185, 285, 568, 932, 965
SfaNI	GCATC	1 cut(s)	269
SfcI	CTRYAG	2 cut(s)	840, 893
SmlI	CTYRAG	2 cut(s)	335, 857
SmoI	CTYRAG	2 cut(s)	335, 857
Sse9I	AATT	4 cut(s)	91, 167, 459, 479
SsiI	CCGC	9 cut(s)	34, 434, 576, 774, 783, 845, 911, 973, 1003
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	6 cut(s)	158, 183, 283, 566, 930, 963
StyI	CCWWGG	2 cut(s)	215, 1006
TaiI	ACGT	2 cut(s)	627, 836
TaqI	TCGA	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	4 cut(s)	91, 167, 459, 479
TatI	WGTACW	2 cut(s)	660, 739
TauI	GCSGC	1 cut(s)	786
TfiI	GAWTC	2 cut(s)	76, 850
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseFI	GTSAC	2 cut(s)	613, 917
TseI	GCWGC	7 cut(s)	374, 650, 708, 776, 842, 960, 1014
Tsp45I	GTSAC	2 cut(s)	613, 917
TspDTI	ATGAA	1 cut(s)	732
TspGWI	ACGGA	5 cut(s)	251, 323, 401, 476, 713
Tth111I	GACNNNGTC	2 cut(s)	310, 835
Van91I	CCANNNNNTGG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	91, 479
XspI	CTAG	1 cut(s)	639
ZraI	GACGTC	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.