Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019831

Physical Location & Seq

Genomic Coordinates Reverse (-)

73190722 .. 73194757

Gene Structure 4036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG457700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTCCTCCTCCAGGGATTGTTGTCACCCTTTTGCTTCTCCTTGCTCTGCAGAGTTATGGGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCGCAACAACTGAGTCAGACATTGAAGAAACTCTTGTGGGGGAATTTAAGAAGTCTCCGGAAGAGGTTTTTGATGCTCTAAAAAATCAGACTGTAGATCTTGTCTTCACTGCTCATCCTACACAATCAGTCCGTAGATCCTTGCTTCAGAAGCATGGAAGAAATTTGAGCTTCCCCGTACTAAATTCATGGCTTAGATTCTTATCGCCTTTTTCTCTCTTGTGCACACCACACGTGTCCAAGATACGGAATTGCTTAACCCAGTTGTATGCCAAAGACATTACTCCAGATGATAAGCAGGAAATTGATGAGGCACTTCAGAGAGAGATTCAAGCTGCATTTCGTATGGATGAGATCAGAAGAACAGCTCCGACTCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTTCATGAAACAATCTGGAATGGTGTCCCAAAGTTTCTGCGTCGTGTTGACACAGCTTTGAAGAACATTGGGATTAATGAACGTGTTCCCTACAATGCCCCACTTTTACAATTCTCTTCTTGGATGGGTGGTGATCGCGATGATTCTGTCATATGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCATATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGGTATTGCCTTTGGATATTGGGAATGCATCAACTTTGATTTCATTGTTCAAGAATATGAAATTCTCCCTCTATATGGAGCTTCTTTCCTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGTGCATCAAGGACTTCGAGAATGCTGCTGTGATAAATAAGGACAAGTTTTATGTTTTCCGGCTTTATGTATTTATATGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

336

Amino Acids

38.53

Weight (kDa)

8.46

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	56 - 95	1.2e-08	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	120 - 225	7.5e-30	Phosphoenolpyruvate carboxylase
Arf	PF00025	229 - 258	2e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019831)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g24170
rosa_multiflora	Rmu_sc0000516.1_g000072 Rmu_sc0003070.1_g000004
rosa_samantha	Rh2CG533600 Rh5BG457700 Rh5CG479700
rosa_wichuraiana	Rw2G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	669
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	4 cut(s)	167, 286, 307, 827
AcuI	CTGAAG	2 cut(s)	254, 425
AcvI	CACGTG	1 cut(s)	358
AfaI	GTAC	2 cut(s)	303, 879
AfiI	CCNNNNNNNGG	4 cut(s)	14, 108, 369, 841
AflIII	ACRYGT	3 cut(s)	355, 357, 613
AgsI	TTSAA	5 cut(s)	149, 455, 592, 706, 817
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	108, 294, 458, 491, 528, 587, 847
AluI	AGCT	7 cut(s)	108, 294, 458, 491, 528, 587, 847
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	125, 183
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	747
Ama87I	CYCGRG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	708
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	458, 950
ApoI	RAATTY	4 cut(s)	167, 286, 307, 827
AseI	ATTAAT	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	615
AsuHPI	GGTGA	4 cut(s)	19, 115, 674, 919
AvaI	CYCGRG	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BbrPI	CACGTG	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	445, 937
BccI	CCATC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	932, 966
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	125, 183
BfmI	CTRYAG	2 cut(s)	50, 216
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	2 cut(s)	459, 951
BlsI	GCNGC	2 cut(s)	460, 952
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	4 cut(s)	121, 187, 803, 939
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	14, 903
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 108, 369, 841
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	14, 903
BseGI	GGATG	4 cut(s)	238, 478, 528, 660
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	4 cut(s)	14, 108, 369, 841
BseMII	CTCAG	2 cut(s)	107, 126
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	445, 937
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	182, 985
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	4 cut(s)	14, 108, 369, 841
BsmAI	GTCTC	2 cut(s)	125, 183
BsmFI	GGGAC	1 cut(s)	542
BsmI	GAATGC	2 cut(s)	796, 952
BsnI	GGCC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	220, 260, 477, 664
Bsp68I	TCGCGA	1 cut(s)	669
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	2 cut(s)	108, 127
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	669
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	14, 903
BssMI	GATC	4 cut(s)	220, 260, 477, 664
BssT1I	CCWWGG	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	180, 652
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	110, 739
BstDEI	CTNAG	4 cut(s)	116, 135, 317, 1008
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	238, 478, 528, 660
BstFNI	CGCG	1 cut(s)	669
BstKTI	GATC	4 cut(s)	223, 263, 480, 667
BstMAI	GTCTC	2 cut(s)	125, 183
BstMBI	GATC	4 cut(s)	220, 260, 477, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	50, 216
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	445, 937
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	220, 260
BstYI	RGATCY	2 cut(s)	220, 260
BsuRI	GGCC	1 cut(s)	710
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	4 cut(s)	238, 478, 528, 660
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
BtuMI	TCGCGA	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	110, 739
CaiI	CAGNNNCTG	1 cut(s)	747
CciI	TCATGA	1 cut(s)	535
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	302, 878
CviAII	CATG	3 cut(s)	278, 312, 536
CviQI	GTAC	2 cut(s)	302, 878
DdeI	CTNAG	4 cut(s)	116, 135, 317, 1008
DpnI	GATC	4 cut(s)	222, 262, 479, 666
DpnII	GATC	4 cut(s)	220, 260, 477, 664
Eam1104I	CTCTTC	2 cut(s)	180, 652
EarI	CTCTTC	2 cut(s)	180, 652
Eco130I	CCWWGG	1 cut(s)	903
Eco147I	AGGCCT	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	254, 425
Eco72I	CACGTG	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	903
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	3 cut(s)	281, 315, 539
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	3 cut(s)	277, 311, 535
FauNDI	CATATG	1 cut(s)	683
Fnu4HI	GCNGC	2 cut(s)	459, 951
FokI	GGATG	4 cut(s)	225, 485, 535, 667
Fsp4HI	GCNGC	2 cut(s)	459, 951
GluI	GCNGC	2 cut(s)	459, 951
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	710
HapII	CCGG	2 cut(s)	182, 985
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	3 cut(s)	281, 315, 539
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	6 cut(s)	118, 137, 321, 451, 496, 674
HpaII	CCGG	2 cut(s)	182, 985
HphI	GGTGA	4 cut(s)	19, 115, 674, 919
Hpy166II	GTNNAC	3 cut(s)	66, 348, 580
Hpy188I	TCNGA	7 cut(s)	117, 142, 213, 273, 444, 482, 495
Hpy188III	TCNNGA	8 cut(s)	182, 410, 536, 547, 668, 748, 817, 943
Hpy8I	GTNNAC	3 cut(s)	66, 348, 580
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	1 cut(s)	745
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	357, 613
HpyCH4V	TGCA	6 cut(s)	52, 348, 461, 794, 930, 1005
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	4 cut(s)	116, 135, 317, 1008
HpySE526I	ACGT	2 cut(s)	357, 613
Hsp92II	CATG	3 cut(s)	281, 315, 539
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	220, 260, 477, 664
LmnI	GCTCC	3 cut(s)	10, 496, 844
Lsp1109I	GCAGC	2 cut(s)	445, 937
LweI	GCATC	4 cut(s)	121, 187, 803, 939
MaeII	ACGT	2 cut(s)	357, 613
MaeIII	GTNAC	2 cut(s)	25, 907
MalI	GATC	4 cut(s)	222, 262, 479, 666
MboI	GATC	4 cut(s)	220, 260, 477, 664
MboII	GAAGA	7 cut(s)	161, 197, 220, 294, 495, 604, 639
MflI	RGATCY	2 cut(s)	220, 260
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	7 cut(s)	167, 286, 307, 373, 426, 641, 827
MlyI	GAGTC	3 cut(s)	127, 146, 490
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	18, 21, 181, 427, 716, 845
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	3 cut(s)	171, 380, 606
MspI	CCGG	2 cut(s)	182, 985
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	796, 952
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	4 cut(s)	220, 260, 477, 664
NlaIII	CATG	3 cut(s)	281, 315, 539
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	25, 907
NruI	TCGCGA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	796
PagI	TCATGA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	710
PctI	GAATGC	2 cut(s)	796, 952
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	321, 451, 674
PkrI	GCNGC	2 cut(s)	460, 952
PleI	GAGTC	3 cut(s)	126, 145, 490
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
PpsI	GAGTC	3 cut(s)	126, 145, 490
Ppu21I	YACGTR	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	13
PspCI	CACGTG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	747
PsuI	RGATCY	2 cut(s)	220, 260
RruI	TCGCGA	1 cut(s)	669
RsaI	GTAC	2 cut(s)	303, 879
RsaNI	GTAC	2 cut(s)	302, 878
SaqAI	TTAA	3 cut(s)	171, 380, 606
SatI	GCNGC	2 cut(s)	459, 951
Sau3AI	GATC	4 cut(s)	220, 260, 477, 664
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	3 cut(s)	127, 146, 490
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	4 cut(s)	121, 187, 803, 939
SfcI	CTRYAG	2 cut(s)	50, 216
Sse9I	AATT	7 cut(s)	167, 286, 307, 373, 426, 641, 827
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	360, 616
TaqI	TCGA	1 cut(s)	942
TasI	AATT	7 cut(s)	167, 286, 307, 373, 426, 641, 827
TatI	WGTACW	1 cut(s)	877
TfiI	GAWTC	3 cut(s)	321, 451, 674
Tru1I	TTAA	3 cut(s)	171, 380, 606
Tru9I	TTAA	3 cut(s)	171, 380, 606
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	25, 907
TseI	GCWGC	2 cut(s)	458, 950
Tsp45I	GTSAC	2 cut(s)	25, 907
TspDTI	ATGAA	6 cut(s)	300, 524, 552, 624, 798, 839
TspGWI	ACGGA	2 cut(s)	245, 385
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	606
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	4 cut(s)	167, 286, 307, 827
XmnI	GAANNNNTTC	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.