Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019831

Physical Location & Seq

Genomic Coordinates Reverse (-)

71010754 .. 71014657

Gene Structure 3904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG533600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTCCTCCTCCAGGGATTGTTGTCACCCTTTTGCTTCTCCTTGCTCTGCAGAGTAATGGGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACTGCAACAACTGAGTCAGACATTGAAGAAACTTTCAAGAGGCTTGTGGGGGAATTTAAGAAGTCTCCGGAAGAGGTTTTTGATGCTCTAAAAAATCAGACTGTAGATCTTGTCTTCACTGCTCATCCTAAACAATCAGTCCGTAGATCCTTGCTTCAGAAGCATGGAAGAAATTTGAGCTTCCCCGTACTAAATTCATGGCTTAGATTCTTATCGCCTTTTTCTCTCTCGTGCACACCACACGTGTCCAAGATACGGAATTGCTTAACCCAGTTGTATGCCAAAGACATTACTCTAGATGATAAGCAGGAAATTGATGAGGCACTTCAGAGAGAGATTCAAGCTGCATTTCGTATGGATGAGATCAGAAGAACAGCTCCGACTCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTTCATGAAACAATCTGGAATGGTGTCCCAAAGTTTCTGCGTCGTGTTGACACAGCTTTGAAGAACATTGGGATTAATGAACGTGTTCCCTACAATGCCCCACTTTTACAATTCTCTTCTTGGATGGGTGGTGATCGCGATGATTCTGTCATATGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCATATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTTCATTGTTCAAGAATATGAAATTCTCCCTCTATATGGAGCTTCTTTCCTATCGTGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

292

Amino Acids

33.43

Weight (kDa)

6.4

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	42 - 98	8.5e-10	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	123 - 228	1.6e-29	Phosphoenolpyruvate carboxylase
Arf	PF00025	232 - 260	3.6e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019831)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g24170
rosa_multiflora	Rmu_sc0000516.1_g000072 Rmu_sc0003070.1_g000004
rosa_samantha	Rh2CG533600 Rh5BG457700 Rh5CG479700
rosa_wichuraiana	Rw2G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	678
AccIII	TCCGGA	1 cut(s)	190
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	4 cut(s)	176, 295, 316, 837
AcuI	CTGAAG	2 cut(s)	263, 434
AcvI	CACGTG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	14, 108, 378, 851
AflIII	ACRYGT	3 cut(s)	364, 366, 622
AgsI	TTSAA	6 cut(s)	149, 160, 464, 601, 715, 827
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	108, 303, 467, 500, 537, 596, 857
AluI	AGCT	7 cut(s)	108, 303, 467, 500, 537, 596, 857
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	125, 192
Alw44I	GTGCAC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	756
Ama87I	CYCGRG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	1 cut(s)	717
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	4 cut(s)	176, 295, 316, 837
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	624
AsuHPI	GGTGA	2 cut(s)	19, 683
AvaI	CYCGRG	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BauI	CACGAG	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	125, 192
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	2 cut(s)	50, 225
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	121, 196
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 108, 378, 851
Bse1I	ACTGG	1 cut(s)	394
Bse8I	GATNNNNATC	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	4 cut(s)	247, 487, 537, 669
BseJI	GATNNNNATC	1 cut(s)	334
BseLI	CCNNNNNNNGG	4 cut(s)	14, 108, 378, 851
BseMII	CTCAG	2 cut(s)	107, 126
BseNI	ACTGG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	4 cut(s)	14, 108, 378, 851
BsmAI	GTCTC	2 cut(s)	125, 192
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	229, 269, 486, 673
Bsp68I	TCGCGA	1 cut(s)	678
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	108, 127
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	4 cut(s)	229, 269, 486, 673
BssSI	CACGAG	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	189, 661
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	110, 748
BstDEI	CTNAG	3 cut(s)	116, 135, 326
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	247, 487, 537, 669
BstFNI	CGCG	1 cut(s)	678
BstKTI	GATC	4 cut(s)	232, 272, 489, 676
BstMAI	GTCTC	2 cut(s)	125, 192
BstMBI	GATC	4 cut(s)	229, 269, 486, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	50, 225
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	229, 269
BstYI	RGATCY	2 cut(s)	229, 269
BsuRI	GGCC	1 cut(s)	719
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	247, 487, 537, 669
BtsI	GCAGTG	2 cut(s)	123, 240
BtsIMutI	CAGTG	2 cut(s)	123, 240
BtuMI	TCGCGA	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	110, 748
CaiI	CAGNNNCTG	1 cut(s)	756
CciI	TCATGA	1 cut(s)	544
CseI	GACGC	2 cut(s)	569, 793
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	3 cut(s)	287, 321, 545
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	3 cut(s)	116, 135, 326
DpnI	GATC	4 cut(s)	231, 271, 488, 675
DpnII	GATC	4 cut(s)	229, 269, 486, 673
Eam1104I	CTCTTC	2 cut(s)	189, 661
EarI	CTCTTC	2 cut(s)	189, 661
Eco147I	AGGCCT	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	263, 434
Eco72I	CACGTG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	3 cut(s)	290, 324, 548
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	3 cut(s)	286, 320, 544
FauNDI	CATATG	1 cut(s)	692
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	4 cut(s)	234, 494, 544, 676
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	2 cut(s)	569, 793
Hin1II	CATG	3 cut(s)	290, 324, 548
HincII	GTYRAC	2 cut(s)	589, 808
HindII	GTYRAC	2 cut(s)	589, 808
HinfI	GANTC	6 cut(s)	118, 137, 330, 460, 505, 683
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	19, 683
Hpy166II	GTNNAC	4 cut(s)	66, 357, 589, 808
Hpy188I	TCNGA	7 cut(s)	117, 142, 222, 282, 453, 491, 504
Hpy188III	TCNNGA	8 cut(s)	160, 191, 419, 545, 556, 677, 757, 827
Hpy8I	GTNNAC	4 cut(s)	66, 357, 589, 808
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	366, 622
HpyCH4V	TGCA	4 cut(s)	52, 128, 357, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	3 cut(s)	116, 135, 326
HpySE526I	ACGT	2 cut(s)	366, 622
Hsp92II	CATG	3 cut(s)	290, 324, 548
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	229, 269, 486, 673
LmnI	GCTCC	3 cut(s)	10, 505, 854
LpnPI	CCDG	9 cut(s)	27, 94, 204, 407, 416, 513, 541, 736, 742
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	2 cut(s)	121, 196
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	366, 622
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	4 cut(s)	231, 271, 488, 675
MboI	GATC	4 cut(s)	229, 269, 486, 673
MboII	GAAGA	7 cut(s)	161, 206, 229, 303, 504, 613, 648
MflI	RGATCY	2 cut(s)	229, 269
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	7 cut(s)	176, 295, 316, 382, 435, 650, 837
MlyI	GAGTC	3 cut(s)	127, 146, 499
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	7 cut(s)	18, 21, 156, 190, 436, 725, 855
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	3 cut(s)	180, 389, 615
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	4 cut(s)	229, 269, 486, 673
NlaIII	CATG	3 cut(s)	290, 324, 548
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	25
NruI	TCGCGA	1 cut(s)	678
PagI	TCATGA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	719
PctI	GAATGC	1 cut(s)	806
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	330, 460, 683
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	3 cut(s)	126, 145, 499
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	3 cut(s)	126, 145, 499
Ppu21I	YACGTR	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	13
PspCI	CACGTG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	2 cut(s)	229, 269
RruI	TCGCGA	1 cut(s)	678
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	180, 389, 615
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	229, 269, 486, 673
SchI	GAGTC	3 cut(s)	127, 146, 499
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	121, 196
SfcI	CTRYAG	2 cut(s)	50, 225
Sse9I	AATT	7 cut(s)	176, 295, 316, 382, 435, 650, 837
SseBI	AGGCCT	1 cut(s)	719
SspMI	CTAG	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	369, 625
TasI	AATT	7 cut(s)	176, 295, 316, 382, 435, 650, 837
TfiI	GAWTC	3 cut(s)	330, 460, 683
Tru1I	TTAA	3 cut(s)	180, 389, 615
Tru9I	TTAA	3 cut(s)	180, 389, 615
TscAI	CASTG	2 cut(s)	130, 247
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	6 cut(s)	309, 533, 561, 633, 808, 849
TspGWI	ACGGA	2 cut(s)	254, 394
TspRI	CASTG	2 cut(s)	130, 247
VneI	GTGCAC	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	4 cut(s)	176, 295, 316, 837
XbaI	TCTAGA	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.