Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003070.1

Orthogroup ID

OG0019831

Physical Location & Seq

Genomic Coordinates Reverse (-)

26767 .. 29415

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003070.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgcaaggttcgttctccattcccctggtttacttatcttatgttgcgcacagtcaatgggtttatggttgtgttattgacgttgtatgcttacttgatcttttcagggtaagaaattgtttgacgcagttgtatgccaaggatattacacctgatgataaacaagaactcgatgaggctctacaaagggagattcaagctgcatttcgcactgatgaaatccgaaggactcctccaacccctcaagatgagatgagggcaggagtgaactacttttatgagacgagttggaaaggtgtaccaaaattcttacgccgagttgacactgccttgaagaacattggcataaatgaatgtgttccttacaatgcccctctcattcaattttcttcttggatgggtggggatcgtgatggaaatcccagcgtcactccagaagttacacgggatgtatgcttatcggtcagaatgatggctgctaacttgtatttctcgcagatagaggatcttatgtttgagttatctatgtggcgttgcaatgaagagcttcttgcttgtgctcatgaacttgataggtcatcaaggaaggatgcaaaacactgcatagttattgaacaatcatttggagaggagcacttgtgttttagaacacttcagcatttcacagcagctacacgagcgcatggcatgaatcccccagtttcgcccaagccagaatggcgtgcactcatggatgagatggcagttgttgctaccgaggaatactgttcaatagttttccaggaacccagttttgttgaatactttcaccttgcaacaccagagatggagtatggtcggatgaacattgggagtcgtccagcagagcgaaagccaagtggagggcatcgaatcacttcgagcaatcccatggatctttgcattggacccagacaaaacatacttaccagtgtggcttgtggcctttcttcagtcaccattgatttaattgagatggtgtttgccaagggagacccaggtattacagctctttatgacaagcttctggtatcagaagacctatggccatttggagagcgactgaggaccaactatgaagatactaaacgcctcctactccaggttgccgggcacagaaatcttctggaaggagatccctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

387

Amino Acids

44.07

Weight (kDa)

5.18

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019831)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g24170
rosa_multiflora	Rmu_sc0000516.1_g000072 Rmu_sc0003070.1_g000004
rosa_samantha	Rh2CG533600 Rh5BG457700 Rh5CG479700
rosa_wichuraiana	Rw2G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
AclWI	GGATC	4 cut(s)	414, 513, 921, 1148
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	2 cut(s)	638, 954
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	881, 1120
AgsI	TTSAA	6 cut(s)	197, 334, 383, 614, 771, 800
AjnI	CCWGG	4 cut(s)	24, 780, 1015, 1119
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	200, 547, 671, 1028, 1042
AluI	AGCT	5 cut(s)	200, 547, 671, 1028, 1042
Alw21I	GWGCWC	3 cut(s)	562, 636, 727
Alw26I	GTCTC	2 cut(s)	275, 1005
Alw44I	GTGCAC	1 cut(s)	723
AlwI	GGATC	4 cut(s)	414, 513, 921, 1148
AoxI	GGCC	2 cut(s)	961, 1064
ApaLI	GTGCAC	1 cut(s)	723
ApeKI	GCWGC	3 cut(s)	200, 476, 668
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	4 cut(s)	357, 546, 804, 895
AspLEI	GCGC	2 cut(s)	49, 682
AspS9I	GGNCC	2 cut(s)	926, 1086
AsuC2I	CCSGG	1 cut(s)	1129
AsuHPI	GGTGA	2 cut(s)	800, 967
AvaII	GGWCC	2 cut(s)	926, 1086
BaeGI	GKGCMC	2 cut(s)	727, 1134
BalI	TGGCCA	1 cut(s)	1066
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	1062
Bbv12I	GWGCWC	3 cut(s)	562, 636, 727
BbvI	GCAGC	3 cut(s)	187, 463, 680
BccI	CCATC	6 cut(s)	391, 407, 466, 733, 820, 988
BciT130I	CCWGG	4 cut(s)	26, 782, 1017, 1121
BcnI	CCSGG	1 cut(s)	1129
BcoDI	GTCTC	2 cut(s)	275, 1005
BfaI	CTAG	1 cut(s)	1162
BglI	GCCNNNNNGGC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	201, 477, 669
BlsI	GCNGC	3 cut(s)	202, 478, 670
Bme1390I	CCNGG	5 cut(s)	26, 782, 1017, 1121, 1129
Bme18I	GGWCC	2 cut(s)	926, 1086
BmgT120I	GGNCC	2 cut(s)	926, 1086
BmiI	GGNNCC	2 cut(s)	786, 928
BmrFI	CCNGG	5 cut(s)	26, 782, 1017, 1121, 1129
BmrI	ACTGGG	2 cut(s)	692, 783
BmsI	GCATC	2 cut(s)	580, 895
BmuI	ACTGGG	2 cut(s)	692, 783
BpiI	GAAGAC	1 cut(s)	1062
BpmI	CTGGAG	2 cut(s)	417, 1103
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	6 cut(s)	24, 138, 756, 909, 1005, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	881, 1120
Bse1I	ACTGG	3 cut(s)	698, 789, 948
Bse3DI	GCAATG	1 cut(s)	544
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	26, 782, 1017, 1121
BseDI	CCNNGG	6 cut(s)	24, 138, 756, 909, 1005, 1015
BseGI	GGATG	5 cut(s)	402, 454, 595, 739, 846
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	881, 1120
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	1073
BseNI	ACTGG	3 cut(s)	698, 789, 948
BseRI	GAGGAG	2 cut(s)	222, 644
BseSI	GKGCMC	2 cut(s)	727, 1134
BseXI	GCAGC	3 cut(s)	187, 463, 680
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	2 cut(s)	963, 1066
BsiHKAI	GWGCWC	3 cut(s)	562, 636, 727
BsiSI	CCGG	1 cut(s)	1128
BslI	CCNNNNNNNGG	2 cut(s)	881, 1120
BsmAI	GTCTC	2 cut(s)	275, 1005
BsmBI	CGTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	963, 1066
Bso31I	GGTCTC	1 cut(s)	1005
Bsp1286I	GDGCHC	4 cut(s)	562, 636, 727, 1134
Bsp143I	GATC	5 cut(s)	97, 406, 505, 913, 1153
Bsp19I	CCATGG	1 cut(s)	909
BspANI	GGCC	2 cut(s)	963, 1066
BspCNI	CTCAG	1 cut(s)	1074
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	786, 928
BspPI	GGATC	4 cut(s)	414, 513, 921, 1148
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	1005
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	698, 789, 948
BssECI	CCNNGG	6 cut(s)	24, 138, 756, 909, 1005, 1015
BssMI	GATC	5 cut(s)	97, 406, 505, 913, 1153
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	3 cut(s)	138, 909, 1005
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	4 cut(s)	26, 782, 1017, 1121
Bst4CI	ACNGT	2 cut(s)	53, 767
Bst6I	CTCTTC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	1 cut(s)	1082
BstDSI	CCRYGG	1 cut(s)	909
BstENI	CCTNNNNNAGG	1 cut(s)	1118
BstF5I	GGATG	5 cut(s)	402, 454, 595, 739, 846
BstHHI	GCGC	2 cut(s)	49, 682
BstKTI	GATC	5 cut(s)	100, 409, 508, 916, 1156
BstMAI	GTCTC	2 cut(s)	275, 1005
BstMBI	GATC	5 cut(s)	97, 406, 505, 913, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	677, 718, 749
BstNI	CCWGG	4 cut(s)	26, 782, 1017, 1121
BstSCI	CCNGG	5 cut(s)	24, 780, 1015, 1119, 1127
BstSLI	GKGCMC	2 cut(s)	727, 1134
BstV1I	GCAGC	3 cut(s)	187, 463, 680
BstV2I	GAAGAC	1 cut(s)	1062
BstX2I	RGATCY	3 cut(s)	505, 913, 1153
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	3 cut(s)	505, 913, 1153
BsuRI	GGCC	2 cut(s)	963, 1066
BtgI	CCRYGG	1 cut(s)	909
BtsCI	GGATG	5 cut(s)	402, 454, 595, 739, 846
BtsI	GCAGTG	2 cut(s)	324, 598
BtsIMutI	CAGTG	4 cut(s)	210, 324, 598, 955
Cac8I	GCNNGC	1 cut(s)	723
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	2 cut(s)	49, 682
Cfr13I	GGNCC	2 cut(s)	926, 1086
CseI	GACGC	2 cut(s)	133, 415
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	5 cut(s)	563, 683, 688, 730, 910
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	1082
DpnI	GATC	5 cut(s)	99, 408, 507, 915, 1155
DpnII	GATC	5 cut(s)	97, 406, 505, 913, 1153
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	3 cut(s)	138, 909, 1005
Eco31I	GGTCTC	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	926, 1086
Eco57I	CTGAAG	2 cut(s)	638, 954
EcoNI	CCTNNNNNAGG	1 cut(s)	1118
EcoRII	CCWGG	4 cut(s)	24, 780, 1015, 1119
EcoT14I	CCWWGG	3 cut(s)	138, 909, 1005
ErhI	CCWWGG	3 cut(s)	138, 909, 1005
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	5 cut(s)	566, 686, 691, 733, 913
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	5 cut(s)	562, 682, 687, 729, 909
Fnu4HI	GCNGC	3 cut(s)	201, 477, 669
FokI	GGATG	5 cut(s)	409, 461, 602, 746, 853
Fsp4HI	GCNGC	3 cut(s)	201, 477, 669
FspBI	CTAG	1 cut(s)	1162
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	2 cut(s)	48, 681
GluI	GCNGC	3 cut(s)	201, 477, 669
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	2 cut(s)	417, 1103
HaeIII	GGCC	2 cut(s)	963, 1066
HapII	CCGG	1 cut(s)	1128
HgaI	GACGC	2 cut(s)	133, 415
HhaI	GCGC	2 cut(s)	49, 682
Hin1II	CATG	5 cut(s)	566, 686, 691, 733, 913
Hin6I	GCGC	2 cut(s)	47, 680
HinP1I	GCGC	2 cut(s)	47, 680
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	5 cut(s)	193, 229, 691, 853, 891
HpaII	CCGG	1 cut(s)	1128
HphI	GGTGA	2 cut(s)	800, 967
Hpy166II	GTNNAC	5 cut(s)	31, 268, 299, 322, 725
Hpy188I	TCNGA	4 cut(s)	224, 467, 840, 1054
Hpy188III	TCNNGA	5 cut(s)	245, 410, 434, 563, 1145
Hpy8I	GTNNAC	5 cut(s)	31, 268, 299, 322, 725
HpyAV	CCTTC	3 cut(s)	219, 580, 1142
HpyCH4III	ACNGT	2 cut(s)	53, 767
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	8 cut(s)	4, 203, 537, 593, 603, 725, 815, 921
HpyF10VI	GCNNNNNNNGC	3 cut(s)	677, 718, 749
HpyF3I	CTNAG	1 cut(s)	1082
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	566, 686, 691, 733, 913
HspAI	GCGC	2 cut(s)	47, 680
Kzo9I	GATC	5 cut(s)	97, 406, 505, 913, 1153
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	3 cut(s)	187, 463, 680
LweI	GCATC	2 cut(s)	580, 895
MaeI	CTAG	1 cut(s)	1162
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	427, 439, 973
MalI	GATC	5 cut(s)	99, 408, 507, 915, 1155
MboI	GATC	5 cut(s)	97, 406, 505, 913, 1153
MboII	GAAGA	7 cut(s)	346, 381, 554, 960, 1067, 1109, 1133
MflI	RGATCY	3 cut(s)	505, 913, 1153
MhlI	GDGCHC	4 cut(s)	562, 636, 727, 1134
MlsI	TGGCCA	1 cut(s)	1066
MluCI	AATT	4 cut(s)	115, 305, 383, 987
MluNI	TGGCCA	1 cut(s)	1066
MlyI	GAGTC	2 cut(s)	223, 862
MmeI	TCCRAC	3 cut(s)	260, 269, 818
Mox20I	TGGCCA	1 cut(s)	1066
MroXI	GAANNNNTTC	4 cut(s)	357, 546, 804, 895
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	1 cut(s)	986
Msp20I	TGGCCA	1 cut(s)	1066
MspI	CCGG	1 cut(s)	1128
MspR9I	CCNGG	5 cut(s)	26, 782, 1017, 1121, 1129
MvaI	CCWGG	4 cut(s)	26, 782, 1017, 1121
MwoI	GCNNNNNNNGC	3 cut(s)	677, 718, 749
NciI	CCSGG	1 cut(s)	1129
NcoI	CCATGG	1 cut(s)	909
NdeII	GATC	5 cut(s)	97, 406, 505, 913, 1153
NlaIII	CATG	5 cut(s)	566, 686, 691, 733, 913
NlaIV	GGNNCC	2 cut(s)	786, 928
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	427, 973
NsbI	TGCGCA	1 cut(s)	48
PagI	TCATGA	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	4 cut(s)	357, 546, 804, 895
PfeI	GAWTC	3 cut(s)	193, 691, 891
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	3 cut(s)	202, 478, 670
PleI	GAGTC	2 cut(s)	223, 861
PpsI	GAGTC	2 cut(s)	223, 861
Psp6I	CCWGG	4 cut(s)	24, 780, 1015, 1119
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	4 cut(s)	24, 780, 1015, 1119
PspN4I	GGNNCC	2 cut(s)	786, 928
PspPI	GGNCC	2 cut(s)	926, 1086
PsuI	RGATCY	3 cut(s)	505, 913, 1153
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	986
SatI	GCNGC	3 cut(s)	201, 477, 669
Sau3AI	GATC	5 cut(s)	97, 406, 505, 913, 1153
Sau96I	GGNCC	2 cut(s)	926, 1086
SchI	GAGTC	2 cut(s)	223, 862
ScrFI	CCNGG	5 cut(s)	26, 782, 1017, 1121, 1129
SduI	GDGCHC	4 cut(s)	562, 636, 727, 1134
SfaNI	GCATC	2 cut(s)	580, 895
SinI	GGWCC	2 cut(s)	926, 1086
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	115, 305, 383, 987
SspMI	CTAG	1 cut(s)	1162
StyD4I	CCNGG	5 cut(s)	24, 780, 1015, 1119, 1127
StyI	CCWWGG	3 cut(s)	138, 909, 1005
TaaI	ACNGT	2 cut(s)	53, 767
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	171, 889, 899
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	4 cut(s)	115, 305, 383, 987
TfiI	GAWTC	3 cut(s)	193, 691, 891
Tru1I	TTAA	1 cut(s)	986
Tru9I	TTAA	1 cut(s)	986
TscAI	CASTG	4 cut(s)	217, 331, 605, 955
TseFI	GTSAC	2 cut(s)	427, 973
TseI	GCWGC	3 cut(s)	200, 476, 668
Tsp45I	GTSAC	2 cut(s)	427, 973
TspDTI	ATGAA	7 cut(s)	231, 366, 555, 579, 704, 857, 1110
TspRI	CASTG	4 cut(s)	217, 331, 605, 955
VneI	GTGCAC	1 cut(s)	723
VpaK11BI	GGWCC	2 cut(s)	926, 1086
XagI	CCTNNNNNAGG	1 cut(s)	1118
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	4 cut(s)	357, 546, 804, 895
XspI	CTAG	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.