Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0019831

Physical Location & Seq

Genomic Coordinates Forward (+)

308845 .. 311324

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000516.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgaggctctacaaaagggagattcaagctgcatttcgcactgatgaaatccgaaggactcctccaacccctcaagatgagatgagggcaggagtgaactacttttatgagacgagttggaaaggtgtaccaaaattcttacgccgagttgacactgccttgaagaacattggcataaatgaatgtgttccttacaatgcccctctcattcaattttcttcttggatgggtggggatcgtgatggaaatcccagcgtcactccagaagttacacgggatgtatgcttatcggtcagaatgatggctgctaacttgtatttctcgcagatagaggatcttatgtttgagttatctatgtggcgttgcaatgaagagcttcttgcttgtgctcatgaacttgataggtcatcaaggaaggatgcaaaacactgcatagttattgaacaatcatttggagaggagcacttgtgttttagaacacttcagcatttcacagcagctacacgagcgcatggcatgaatcccccagtttcgcccaagccagaatggcgtgcactcatggatgagatggcagttgttgctaccgaggaatactgttcaatagttttccaggaacccagttttgttgaatactttcaccttgcaacaccagagatggagtatggtcggatgaacattgggagtcgtccagcagagcgaaagccaagtggagggcatcgaatcacttcgagcaatcccatggatctttgcattggacccagacaaaacatacttaccagtgtggcttgtggcctttcttcagtcaccattgatttaattgagatggtgtttgccaagggagacccaggtattacagctctttatgacaagcttctggtatcagaagacctatggccatttggagagcgactgaggaccaactatgaagatactaaacgcctcctactccaggttgccgggcacagaaatcttctggaaggagatccctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

330

Amino Acids

37.66

Weight (kDa)

5.59

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019831)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g24170
rosa_multiflora	Rmu_sc0000516.1_g000072 Rmu_sc0003070.1_g000004
rosa_samantha	Rh2CG533600 Rh5BG457700 Rh5CG479700
rosa_wichuraiana	Rw2G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	243, 342, 750, 977
AcoI	YGGCCR	1 cut(s)	893
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	2 cut(s)	467, 783
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	710, 949
AgsI	TTSAA	6 cut(s)	26, 163, 212, 443, 600, 629
AjnI	CCWGG	3 cut(s)	609, 844, 948
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	5 cut(s)	29, 376, 500, 857, 871
AluI	AGCT	5 cut(s)	29, 376, 500, 857, 871
Alw21I	GWGCWC	3 cut(s)	391, 465, 556
Alw26I	GTCTC	2 cut(s)	104, 834
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	243, 342, 750, 977
AoxI	GGCC	2 cut(s)	790, 893
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	29, 305, 497
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	4 cut(s)	186, 375, 633, 724
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	755, 915
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	2 cut(s)	629, 796
AvaII	GGWCC	2 cut(s)	755, 915
BaeGI	GKGCMC	2 cut(s)	556, 963
BalI	TGGCCA	1 cut(s)	895
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	3 cut(s)	391, 465, 556
BbvI	GCAGC	3 cut(s)	16, 292, 509
BccI	CCATC	6 cut(s)	220, 236, 295, 562, 649, 817
BciT130I	CCWGG	3 cut(s)	611, 846, 950
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	104, 834
BfaI	CTAG	1 cut(s)	991
BglI	GCCNNNNNGGC	1 cut(s)	547
BisI	GCNGC	3 cut(s)	30, 306, 498
BlsI	GCNGC	3 cut(s)	31, 307, 499
Bme1390I	CCNGG	4 cut(s)	611, 846, 950, 958
Bme18I	GGWCC	2 cut(s)	755, 915
BmgT120I	GGNCC	2 cut(s)	755, 915
BmiI	GGNNCC	2 cut(s)	615, 757
BmrFI	CCNGG	4 cut(s)	611, 846, 950, 958
BmrI	ACTGGG	2 cut(s)	521, 612
BmsI	GCATC	2 cut(s)	409, 724
BmuI	ACTGGG	2 cut(s)	521, 612
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	2 cut(s)	246, 932
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	958
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	4 cut(s)	585, 738, 834, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 949
Bse1I	ACTGG	3 cut(s)	527, 618, 777
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	611, 846, 950
BseDI	CCNNGG	4 cut(s)	585, 738, 834, 844
BseGI	GGATG	5 cut(s)	231, 283, 424, 568, 675
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	710, 949
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	902
BseNI	ACTGG	3 cut(s)	527, 618, 777
BseRI	GAGGAG	2 cut(s)	51, 473
BseSI	GKGCMC	2 cut(s)	556, 963
BseXI	GCAGC	3 cut(s)	16, 292, 509
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	792, 895
BsiHKAI	GWGCWC	3 cut(s)	391, 465, 556
BsiSI	CCGG	1 cut(s)	957
BslI	CCNNNNNNNGG	2 cut(s)	710, 949
BsmAI	GTCTC	2 cut(s)	104, 834
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	792, 895
Bso31I	GGTCTC	1 cut(s)	834
Bsp1286I	GDGCHC	4 cut(s)	391, 465, 556, 963
Bsp143I	GATC	4 cut(s)	235, 334, 742, 982
Bsp19I	CCATGG	1 cut(s)	738
BspANI	GGCC	2 cut(s)	792, 895
BspCNI	CTCAG	1 cut(s)	903
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	615, 757
BspPI	GGATC	4 cut(s)	243, 342, 750, 977
BspQI	GCTCTTC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	834
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	527, 618, 777
BssECI	CCNNGG	4 cut(s)	585, 738, 834, 844
BssMI	GATC	4 cut(s)	235, 334, 742, 982
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	2 cut(s)	738, 834
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	611, 846, 950
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	911
BstDSI	CCRYGG	1 cut(s)	738
BstENI	CCTNNNNNAGG	1 cut(s)	947
BstF5I	GGATG	5 cut(s)	231, 283, 424, 568, 675
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	4 cut(s)	238, 337, 745, 985
BstMAI	GTCTC	2 cut(s)	104, 834
BstMBI	GATC	4 cut(s)	235, 334, 742, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 547, 578
BstNI	CCWGG	3 cut(s)	611, 846, 950
BstSCI	CCNGG	4 cut(s)	609, 844, 948, 956
BstSLI	GKGCMC	2 cut(s)	556, 963
BstV1I	GCAGC	3 cut(s)	16, 292, 509
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	3 cut(s)	334, 742, 982
BstYI	RGATCY	3 cut(s)	334, 742, 982
BsuRI	GGCC	2 cut(s)	792, 895
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	5 cut(s)	231, 283, 424, 568, 675
BtsI	GCAGTG	2 cut(s)	153, 427
BtsIMutI	CAGTG	4 cut(s)	39, 153, 427, 784
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	2 cut(s)	755, 915
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	5 cut(s)	392, 512, 517, 559, 739
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	911
DpnI	GATC	4 cut(s)	237, 336, 744, 984
DpnII	GATC	4 cut(s)	235, 334, 742, 982
EaeI	YGGCCR	1 cut(s)	893
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	738, 834
Eco31I	GGTCTC	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	755, 915
Eco57I	CTGAAG	2 cut(s)	467, 783
EcoNI	CCTNNNNNAGG	1 cut(s)	947
EcoRII	CCWGG	3 cut(s)	609, 844, 948
EcoT14I	CCWWGG	2 cut(s)	738, 834
ErhI	CCWWGG	2 cut(s)	738, 834
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	5 cut(s)	395, 515, 520, 562, 742
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	5 cut(s)	391, 511, 516, 558, 738
Fnu4HI	GCNGC	3 cut(s)	30, 306, 498
FokI	GGATG	5 cut(s)	238, 290, 431, 575, 682
Fsp4HI	GCNGC	3 cut(s)	30, 306, 498
FspBI	CTAG	1 cut(s)	991
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	3 cut(s)	30, 306, 498
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	246, 932
HaeIII	GGCC	2 cut(s)	792, 895
HapII	CCGG	1 cut(s)	957
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	5 cut(s)	395, 515, 520, 562, 742
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	5 cut(s)	22, 58, 520, 682, 720
HpaII	CCGG	1 cut(s)	957
HphI	GGTGA	2 cut(s)	629, 796
Hpy166II	GTNNAC	4 cut(s)	97, 128, 151, 554
Hpy188I	TCNGA	4 cut(s)	53, 296, 669, 883
Hpy188III	TCNNGA	5 cut(s)	74, 239, 263, 392, 974
Hpy8I	GTNNAC	4 cut(s)	97, 128, 151, 554
HpyAV	CCTTC	3 cut(s)	48, 409, 971
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4V	TGCA	7 cut(s)	32, 366, 422, 432, 554, 644, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 547, 578
HpyF3I	CTNAG	1 cut(s)	911
Hsp92II	CATG	5 cut(s)	395, 515, 520, 562, 742
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	4 cut(s)	235, 334, 742, 982
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	16, 292, 509
LweI	GCATC	2 cut(s)	409, 724
MaeI	CTAG	1 cut(s)	991
MaeIII	GTNAC	3 cut(s)	256, 268, 802
MalI	GATC	4 cut(s)	237, 336, 744, 984
MboI	GATC	4 cut(s)	235, 334, 742, 982
MboII	GAAGA	7 cut(s)	175, 210, 383, 789, 896, 938, 962
MflI	RGATCY	3 cut(s)	334, 742, 982
MhlI	GDGCHC	4 cut(s)	391, 465, 556, 963
MlsI	TGGCCA	1 cut(s)	895
MluCI	AATT	3 cut(s)	134, 212, 816
MluNI	TGGCCA	1 cut(s)	895
MlyI	GAGTC	2 cut(s)	52, 691
MmeI	TCCRAC	3 cut(s)	89, 98, 647
Mox20I	TGGCCA	1 cut(s)	895
MroXI	GAANNNNTTC	4 cut(s)	186, 375, 633, 724
MscI	TGGCCA	1 cut(s)	895
MseI	TTAA	1 cut(s)	815
Msp20I	TGGCCA	1 cut(s)	895
MspI	CCGG	1 cut(s)	957
MspR9I	CCNGG	4 cut(s)	611, 846, 950, 958
MvaI	CCWGG	3 cut(s)	611, 846, 950
MwoI	GCNNNNNNNGC	3 cut(s)	506, 547, 578
NciI	CCSGG	1 cut(s)	958
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	4 cut(s)	235, 334, 742, 982
NlaIII	CATG	5 cut(s)	395, 515, 520, 562, 742
NlaIV	GGNNCC	2 cut(s)	615, 757
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	256, 802
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	366
PdmI	GAANNNNTTC	4 cut(s)	186, 375, 633, 724
PfeI	GAWTC	3 cut(s)	22, 520, 720
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	3 cut(s)	31, 307, 499
PleI	GAGTC	2 cut(s)	52, 690
PpsI	GAGTC	2 cut(s)	52, 690
Psp6I	CCWGG	3 cut(s)	609, 844, 948
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	609, 844, 948
PspN4I	GGNNCC	2 cut(s)	615, 757
PspPI	GGNCC	2 cut(s)	755, 915
PsuI	RGATCY	3 cut(s)	334, 742, 982
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	815
SatI	GCNGC	3 cut(s)	30, 306, 498
Sau3AI	GATC	4 cut(s)	235, 334, 742, 982
Sau96I	GGNCC	2 cut(s)	755, 915
SchI	GAGTC	2 cut(s)	52, 691
ScrFI	CCNGG	4 cut(s)	611, 846, 950, 958
SduI	GDGCHC	4 cut(s)	391, 465, 556, 963
SfaNI	GCATC	2 cut(s)	409, 724
SinI	GGWCC	2 cut(s)	755, 915
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	134, 212, 816
SspMI	CTAG	1 cut(s)	991
StyD4I	CCNGG	4 cut(s)	609, 844, 948, 956
StyI	CCWWGG	2 cut(s)	738, 834
TaaI	ACNGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	718, 728
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	134, 212, 816
TfiI	GAWTC	3 cut(s)	22, 520, 720
Tru1I	TTAA	1 cut(s)	815
Tru9I	TTAA	1 cut(s)	815
TscAI	CASTG	4 cut(s)	46, 160, 434, 784
TseFI	GTSAC	2 cut(s)	256, 802
TseI	GCWGC	3 cut(s)	29, 305, 497
Tsp45I	GTSAC	2 cut(s)	256, 802
TspDTI	ATGAA	7 cut(s)	60, 195, 384, 408, 533, 686, 939
TspRI	CASTG	4 cut(s)	46, 160, 434, 784
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	755, 915
XagI	CCTNNNNNAGG	1 cut(s)	947
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	4 cut(s)	186, 375, 633, 724
XspI	CTAG	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.