pycom16g25690

Belongs to the profilin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
27806409 .. 27807731
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGAGCTATAAATTTATTTTTCTGCACTTACGTTCTTATTGTGGTAGCAAAATTAGTCTAAATTCATTATCTAATAATTTTGGTTTTGGATTAAAATTTAAATTTTCTGGATTAAAAATTTCAAGTATTAACCCAAAGATATTAAAAAAACTCTGTAAGGGATCTTTAACAAAAAAAATTTCGATATTGTTTATTTTAACGAAAAATCACATTTTTACATTAAAAATTAATCTTCATACTATTCATTTTATCTTTTACTTTACCCTTATCGTTAAATGTCAAAGGTCGAATTGCGTCGAAAGAGGGAATCGATTCCTGAAAACAGTTTCAAGCCGCTCCGAACTGTCACTCAAACGAATTGGGGCGAAAGACCGGAGCTTCCGTTTCCTGCTCCGGGAGGGCAATTCGCCACCACTTCATAGGAGGCGAGAAATGGATTGGGGTTTTGTGCATAAAGCTTGGGACAAGTGGGCTTCCCTCAACATTGCTTCTCCTGATGAGCCATTAAAAGCAGCTTTACTCATCAACTACGACCCAACTGGACCATCTCGCTTGTTGTCTACCATGTATGTTCCTTTCAATTCCATTAATTTTTTGCTTTTGTTTTCTGTCTTCTGTTTTTTGTTTATGAATTTGTGTTCCAGATTGTCCAAATGCAATTCGATTTATAACTTCGTCCTCGAAATATTTGTTCGAATCCACATTGTTTATCCAATTTCTTCCAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

244

Amino Acids

28.24

Weight (kDa)

10.2

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19400
fragaria_vesca FvH4_5g24490 FvH4_5g24490 FvH4_5g24490
malus_domestica MD16G1286900.v1.1
prunus_persica Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1 Prupe.5G015700_v2.0.a1
pyrus_communis pycom16g25690
rosa_samantha Rh7BG277400
rosa_wichuraiana Rw7G024380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 560
AciI CCGC 1 cut(s) 334
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 7 cut(s) 11, 61, 95, 101, 117, 177, 631
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 3 cut(s) 123, 330, 580
AluBI AGCT 4 cut(s) 6, 378, 458, 515
AluI AGCT 4 cut(s) 6, 378, 458, 515
AlwI GGATC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 7 cut(s) 11, 61, 95, 101, 117, 177, 631
AseI ATTAAT 2 cut(s) 228, 588
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 694
AvaII GGWCC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 524
BccI CCATC 1 cut(s) 553
BcnI CCSGG 1 cut(s) 395
BisI GCNGC 2 cut(s) 334, 513
BlsI GCNGC 2 cut(s) 335, 514
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmrFI CCNGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 604
Bpu14I TTCGAA 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 310
BsiSI CCGG 2 cut(s) 373, 394
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 694
Bsp143I GATC 1 cut(s) 161
BspACI CCGC 1 cut(s) 334
BspDI ATCGAT 1 cut(s) 310
BspPI GGATC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 694
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 1 cut(s) 544
BssMI GATC 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 325, 345
BstBI TTCGAA 1 cut(s) 694
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
Bsu15I ATCGAT 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 542
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 1 cut(s) 283
CviAII CATG 1 cut(s) 565
CviJI RGCY 7 cut(s) 6, 333, 378, 458, 473, 502, 515
CviKI_1 RGCY 7 cut(s) 6, 333, 378, 458, 473, 502, 515
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
DraI TTTAAA 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 542
FaeI CATG 1 cut(s) 568
FaiI YATR 8 cut(s) 9, 237, 420, 453, 566, 570, 629, 669
FaqI GGGAC 1 cut(s) 476
FatI CATG 1 cut(s) 564
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 2 cut(s) 334, 513
Fsp4HI GCNGC 2 cut(s) 334, 513
GluI GCNGC 2 cut(s) 334, 513
HapII CCGG 2 cut(s) 373, 394
HgaI GACGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 3 cut(s) 307, 312, 696
HpaII CCGG 2 cut(s) 373, 394
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 5 cut(s) 108, 316, 494, 642, 723
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 325, 345
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 25, 451, 657
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 568
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 3 cut(s) 341, 375, 396
LpnPI CCDG 8 cut(s) 93, 329, 386, 401, 407, 507, 525, 655
Lsp1109I GCAGC 1 cut(s) 524
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 345
MalI GATC 1 cut(s) 163
MbiI CCGCTC 1 cut(s) 336
MboI GATC 1 cut(s) 161
MboII GAAGA 3 cut(s) 224, 604, 711
MflI RGATCY 1 cut(s) 161
MnlI CCTC 5 cut(s) 296, 391, 417, 488, 689
MroXI GAANNNNTTC 1 cut(s) 311
MspI CCGG 2 cut(s) 373, 394
MspR9I CCNGG 1 cut(s) 395
NciI CCSGG 1 cut(s) 395
NdeII GATC 1 cut(s) 161
NlaIII CATG 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 345
NspV TTCGAA 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 307, 312, 696
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 2 cut(s) 335, 514
PshBI ATTAAT 2 cut(s) 228, 588
PsiI TTATAA 1 cut(s) 669
PspPI GGNCC 1 cut(s) 542
PsuI RGATCY 1 cut(s) 161
SatI GCNGC 2 cut(s) 334, 513
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 395
SetI ASST 6 cut(s) 8, 34, 287, 380, 460, 517
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 542
SmiI ATTTAAAT 1 cut(s) 100
SsiI CCGC 1 cut(s) 334
SspI AATATT 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 393
SwaI ATTTAAAT 1 cut(s) 100
TaaI ACNGT 2 cut(s) 325, 345
TaiI ACGT 1 cut(s) 34
TaqI TCGA 7 cut(s) 182, 287, 297, 310, 662, 681, 694
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 3 cut(s) 307, 312, 696
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 5 cut(s) 54, 224, 233, 407, 644
TspGWI ACGGA 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 542
VspI ATTAAT 2 cut(s) 228, 588
XapI RAATTY 7 cut(s) 11, 61, 95, 101, 117, 177, 631
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.