pycom17g00760

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014782
Physical Location & Seq
Forward (+)
560455 .. 562309
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGAAGAATCGACCAGCTGAATCTCTAGGATTGGATTTCAAGAAATTGCAGGAGGATCCAATAAAGCTCTCATCGTCGAGAAGGATTAATGGCAGTAACAGTGGAAGCGATCATCTGAAAGTTCTATGCTTGGTCGACGGTTGCAGGGCGGACCTCAGCCGTTGTCGGGAATATCATCGGCGGCACAGAGTCTGCGAGCTCCACTCCAAGACCCCTGTTGTCGTCGTCAAGGGAGAACAGAAACGATTCTGCCAGCAGTGCAGCAGAGTCCATTCTCTGGTGGAGTTTGACGAGGGGAAGAAGAGCTGCAGAAAACGTCTCAATGGACACAACCAGCGCCGGCGGAAACCTAAACCGGAATCCTTCTATTTCAGTTCCCACGACTTCTTCTCCACCTACAAGGGTCCCAGAATCCTGCAATTTAGTAATCCACAAGTATGTGCAACAACTAATGTGAGATGTATGTGGCCTGTGGAGGACAAAAGAGGAGCAGAATCCATGTGTTCCAACCACCACCACCAGTGGCTGCGTGCTACTGACGAGCCAAAGCCTCCCAATTCCTTCAACGGAGCAGGACACGAACCTTTTCTTTTCTTGCAAGCAAGTGACCCTAAAGCCACCGCAGGCAACCGAGCAGCCCCTCAAGCTTTCATGTGCCAGCAGCAGCCGCTTCCAATAACTGCTGCTGCCTCGCCAAAAAGCACAAGGGGTTGTGCTCTCTATCTTCTGTCATCACATCCAACACAAAATCCAGTTACTGGCCTAAACCACTTGGCTCAGTCCCCTGTCACCACTACTCATCCAGGTCAGATCCTTGACGCGAGACTTCAGATGAACCGTGGTTTCTCTGAATTCTCATGCTCACATGATGAGGAGGACAGGACTGTAATTCCAGAAATGATGTTTCTTCCGGGGCCTGATGGCTTTTCGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

313

Amino Acids

35.15

Weight (kDa)

9.27

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 43 - 116 4.8e-30 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53760
malus_domestica MD09G1008900.v1.1 MD17G1001400.v1.1
prunus_persica Prupe.3G308100_v2.0.a1 Prupe.3G308100_v2.0.a1
pyrus_communis pycom111g00720 pycom17g00760
rosa_chinensis RchiOBHm_Chr2g0175901
rosa_laevigata RLG00000022362
rosa_multiflora Rmu_ssc0000114.1_g000004
rosa_roxburghii Rroxscaffold_2G00076970
rosa_rugosa Rorug02G0588300
rosa_samantha Rh2AG667600 Rh2BG679100 Rh2CG641900 Rh2DG692600
rosa_wichuraiana Rw2G054720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 277, 758
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 821
AciI CCGC 5 cut(s) 149, 181, 343, 621, 668
AclWI GGATC 3 cut(s) 50, 63, 805
AcsI RAATTY 1 cut(s) 851
AcuI CTGAAG 1 cut(s) 812
AfiI CCNNNNNNNGG 3 cut(s) 166, 277, 758
AgsI TTSAA 2 cut(s) 40, 565
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 5 cut(s) 17, 67, 199, 306, 647
AluI AGCT 5 cut(s) 17, 67, 199, 306, 647
Alw21I GWGCWC 2 cut(s) 201, 718
Alw26I GTCTC 2 cut(s) 323, 817
AlwI GGATC 3 cut(s) 50, 63, 805
AlwNI CAGNNNCTG 3 cut(s) 192, 526, 758
AoxI GGCC 3 cut(s) 467, 760, 914
ApeKI GCWGC 8 cut(s) 261, 306, 526, 635, 661, 664, 683, 686
ApoI RAATTY 1 cut(s) 851
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 2 cut(s) 245, 585
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 3 cut(s) 151, 404, 914
AsuC2I CCSGG 1 cut(s) 912
AsuHPI GGTGA 1 cut(s) 781
AsuII TTCGAA 1 cut(s) 929
AvaII GGWCC 2 cut(s) 151, 404
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 201, 718
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 8 cut(s) 273, 293, 513, 647, 670, 673, 673, 676
BccI CCATC 1 cut(s) 914
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 804
BcnI CCSGG 1 cut(s) 912
BcoDI GTCTC 2 cut(s) 323, 817
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 804, 912
Bme18I GGWCC 2 cut(s) 151, 404
BmgT120I GGNCC 3 cut(s) 151, 404, 914
BmiI GGNNCC 4 cut(s) 57, 405, 406, 915
BmrFI CCNGG 2 cut(s) 804, 912
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 929
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 912
BsaJI CCNNGG 2 cut(s) 838, 911
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 277, 758
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 3 cut(s) 520, 752, 763
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 2 cut(s) 838, 911
BseGI GGATG 2 cut(s) 736, 799
BseLI CCNNNNNNNGG 3 cut(s) 166, 277, 758
BseMII CTCAG 2 cut(s) 169, 791
BseNI ACTGG 3 cut(s) 520, 752, 763
BseRI GAGGAG 2 cut(s) 501, 887
BseXI GCAGC 8 cut(s) 273, 293, 513, 647, 670, 673, 673, 676
BsgI GTGCAG 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 821
BshFI GGCC 3 cut(s) 469, 762, 916
BsiHKAI GWGCWC 2 cut(s) 201, 718
BsiSI CCGG 3 cut(s) 340, 356, 911
BslFI GGGAC 2 cut(s) 390, 766
BslI CCNNNNNNNGG 3 cut(s) 166, 277, 758
BsmAI GTCTC 2 cut(s) 323, 817
BsmBI CGTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 390, 766
BsnI GGCC 3 cut(s) 469, 762, 916
Bsp119I TTCGAA 1 cut(s) 929
Bsp1286I GDGCHC 2 cut(s) 201, 718
Bsp143I GATC 3 cut(s) 55, 109, 810
BspACI CCGC 5 cut(s) 149, 181, 343, 621, 668
BspANI GGCC 3 cut(s) 469, 762, 916
BspCNI CTCAG 2 cut(s) 168, 790
BspFNI CGCG 1 cut(s) 821
BspLI GGNNCC 4 cut(s) 57, 405, 406, 915
BspMAI CTGCAG 1 cut(s) 311
BspPI GGATC 3 cut(s) 50, 63, 805
BspQI GCTCTTC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 929
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 3 cut(s) 520, 752, 763
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 838, 911
BssMI GATC 3 cut(s) 55, 109, 810
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 4 cut(s) 101, 140, 839, 886
Bst6I CTCTTC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 929
BstC8I GCNNGC 7 cut(s) 197, 254, 341, 531, 600, 625, 659
BstDEI CTNAG 2 cut(s) 155, 777
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 736, 799
BstFNI CGCG 1 cut(s) 821
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 3 cut(s) 58, 112, 813
BstMAI GTCTC 2 cut(s) 323, 817
BstMBI GATC 3 cut(s) 55, 109, 810
BstMWI GCNNNNNNNGC 3 cut(s) 258, 644, 667
BstNI CCWGG 1 cut(s) 804
BstSCI CCNGG 2 cut(s) 802, 910
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 821
BstV1I GCAGC 8 cut(s) 273, 293, 513, 647, 670, 673, 673, 676
BstX2I RGATCY 2 cut(s) 55, 810
BstYI RGATCY 2 cut(s) 55, 810
BsuRI GGCC 3 cut(s) 469, 762, 916
BtgI CCRYGG 1 cut(s) 838
BtsCI GGATG 2 cut(s) 736, 799
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 3 cut(s) 106, 263, 527
Cac8I GCNNGC 7 cut(s) 197, 254, 341, 531, 600, 625, 659
CaiI CAGNNNCTG 3 cut(s) 192, 526, 758
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 3 cut(s) 151, 404, 914
CseI GACGC 1 cut(s) 827
CviAII CATG 4 cut(s) 499, 652, 858, 866
DdeI CTNAG 2 cut(s) 155, 777
DpnI GATC 3 cut(s) 57, 111, 812
DpnII GATC 3 cut(s) 55, 109, 810
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 2 cut(s) 164, 358
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 151, 404
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 2 cut(s) 404, 914
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 4 cut(s) 502, 655, 861, 869
FaiI YATR 7 cut(s) 127, 439, 464, 500, 653, 859, 867
FaqI GGGAC 2 cut(s) 390, 766
FatI CATG 4 cut(s) 498, 651, 857, 865
FblI GTMKAC 1 cut(s) 135
FokI GGATG 2 cut(s) 723, 786
FriOI GRGCYC 1 cut(s) 201
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 3 cut(s) 469, 762, 916
HapII CCGG 3 cut(s) 340, 356, 911
HgaI GACGC 1 cut(s) 827
HhaI GCGC 1 cut(s) 339
Hin1II CATG 4 cut(s) 502, 655, 861, 869
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 8 cut(s) 7, 20, 189, 246, 267, 359, 411, 494
HpaII CCGG 3 cut(s) 340, 356, 911
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 4 cut(s) 117, 810, 831, 850
Hpy188III TCNNGA 4 cut(s) 40, 78, 167, 893
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 3 cut(s) 79, 140, 227
HpyAV CCTTC 3 cut(s) 75, 373, 571
HpyCH4III ACNGT 4 cut(s) 101, 140, 839, 886
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 7 cut(s) 49, 144, 261, 309, 418, 443, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 644, 667
HpyF3I CTNAG 2 cut(s) 155, 777
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 4 cut(s) 502, 655, 861, 869
HspAI GCGC 1 cut(s) 337
KflI GGGWCCC 1 cut(s) 404
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 55, 109, 810
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 204, 488, 569
Lsp1109I GCAGC 8 cut(s) 273, 293, 513, 647, 670, 673, 673, 676
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 95, 605, 754, 787
MalI GATC 3 cut(s) 57, 111, 812
MboI GATC 3 cut(s) 55, 109, 810
MboII GAAGA 6 cut(s) 16, 310, 313, 379, 716, 899
MflI RGATCY 2 cut(s) 55, 810
MhlI GDGCHC 2 cut(s) 201, 718
MluCI AATT 5 cut(s) 44, 419, 556, 851, 888
MlyI GAGTC 2 cut(s) 198, 276
MmeI TCCRAC 2 cut(s) 531, 764
MreI CGCCGGCG 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 339
MroXI GAANNNNTTC 2 cut(s) 245, 585
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 3 cut(s) 340, 356, 911
MspR9I CCNGG 2 cut(s) 804, 912
MvaI CCWGG 1 cut(s) 804
MvnI CGCG 1 cut(s) 821
MwoI GCNNNNNNNGC 3 cut(s) 258, 644, 667
NaeI GCCGGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 912
NdeII GATC 3 cut(s) 55, 109, 810
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 4 cut(s) 502, 655, 861, 869
NlaIV GGNNCC 4 cut(s) 57, 405, 406, 915
NmuCI GTSAC 2 cut(s) 605, 787
NspV TTCGAA 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 296
PdiI GCCGGC 1 cut(s) 341
PdmI GAANNNNTTC 2 cut(s) 245, 585
PfeI GAWTC 6 cut(s) 7, 20, 246, 359, 411, 494
PflMI CCANNNNNTGG 2 cut(s) 277, 758
PleI GAGTC 2 cut(s) 197, 275
PpsI GAGTC 2 cut(s) 197, 275
PpuMI RGGWCCY 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 4 cut(s) 57, 405, 406, 915
PspPI GGNCC 3 cut(s) 151, 404, 914
PspPPI RGGWCCY 1 cut(s) 404
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 3 cut(s) 192, 526, 758
PsuI RGATCY 2 cut(s) 55, 810
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 436
SacI GAGCTC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 3 cut(s) 55, 109, 810
Sau96I GGNCC 3 cut(s) 151, 404, 914
SchI GAGTC 2 cut(s) 198, 276
ScrFI CCNGG 2 cut(s) 804, 912
SduI GDGCHC 2 cut(s) 201, 718
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 929
SgrAI CRCCGGYG 1 cut(s) 339
SinI GGWCC 2 cut(s) 151, 404
SmiMI CAYNNNNRTG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 5 cut(s) 44, 419, 556, 851, 888
SsiI CCGC 5 cut(s) 149, 181, 343, 621, 668
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 802, 910
TaaI ACNGT 4 cut(s) 101, 140, 839, 886
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 10, 77, 135, 929
TasI AATT 5 cut(s) 44, 419, 556, 851, 888
TauI GCSGC 2 cut(s) 184, 670
TfiI GAWTC 6 cut(s) 7, 20, 246, 359, 411, 494
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 3 cut(s) 106, 263, 527
TseFI GTSAC 2 cut(s) 605, 787
TseI GCWGC 8 cut(s) 261, 306, 526, 635, 661, 664, 683, 686
Tsp45I GTSAC 2 cut(s) 605, 787
TspDTI ATGAA 3 cut(s) 17, 640, 848
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 3 cut(s) 106, 263, 527
Van91I CCANNNNNTGG 2 cut(s) 277, 758
VpaK11BI GGWCC 2 cut(s) 151, 404
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 2 cut(s) 245, 585
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.