pycom17g01130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0021246
Physical Location & Seq
Forward (+)
784676 .. 785302
627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGAATGAATGTAACAATCTCTGTCTCAGGTTAGATTTGCCGAAAACCAGCACTGGAGCCGTAAAATCAAGCAACATCGAAGAACAGACTACAAAAGTAGCAAAAACAAACCAAAATCACACTTCATATATACACCATCCATCAAAACATCATGACCTTAAACTCATCAAAATTGAGCACCCCATCGCCGTTGATCGATCAAATCTCGCAATCATGTTCTTGCACTCGTCGACGCTCTTGGACTCGCCAAGCCGACTCAGCATCCTCTTGAGACTCTTGGGCGTAATGCACCCACTCCCGTCCGTCACGTACATCTTAAAAGCCTCCCTCAAGACATTAACCTTCTCTTCGTCGCATCCTCCGTCGACGAACTTGACAAAGTCATCCAACCCCAGCAGCCCGTCGCCGTCCGAGTCTAGGTACTCCACCGCCAACTCCACCTCCGTCAGCGAGAGCTCGCCGCCTATCGCCCCGACGCACTGTTGCAGCTCCATAGGTGATATCTTTCCGTCTCCGTTGGCATCAAACTGCTTGAAAACGCGCTCGTATTGTGCTACTTTATCCATCAGCTCGAAACCGTTTTTCTTTCTGGAAGTTTGTGCTCTTGGTTCTGGGTTAAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.48

Weight (kDa)

9.01

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021246)

Species Orthologous Gene IDs
prunus_persica Prupe.1G332900_v2.0.a1
pyrus_communis pycom06g13320 pycom111g01150 pycom17g01130
rosa_samantha Rh3AG309900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 230, 365
AccII CGCG 1 cut(s) 541
AciI CCGC 2 cut(s) 429, 461
AfaI GTAC 2 cut(s) 311, 422
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 1 cut(s) 535
AluBI AGCT 3 cut(s) 456, 489, 570
AluI AGCT 3 cut(s) 456, 489, 570
Alw21I GWGCWC 3 cut(s) 180, 458, 604
Alw26I GTCTC 3 cut(s) 29, 265, 516
ApeKI GCWGC 2 cut(s) 396, 486
AspLEI GCGC 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 509
BanII GRGCYC 1 cut(s) 458
Bbv12I GWGCWC 3 cut(s) 180, 458, 604
BbvI GCAGC 2 cut(s) 408, 498
BccI CCATC 4 cut(s) 144, 148, 191, 572
BceAI ACGGC 3 cut(s) 44, 173, 391
BcoDI GTCTC 3 cut(s) 29, 265, 516
BfaI CTAG 1 cut(s) 417
BisI GCNGC 3 cut(s) 397, 461, 487
BlsI GCNGC 3 cut(s) 398, 462, 488
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 3 cut(s) 270, 364, 530
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 289, 314
Bsa29I ATCGAT 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 196
BseGI GGATG 4 cut(s) 136, 261, 355, 383
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMII CTCAG 2 cut(s) 40, 271
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 408, 498
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 196
BsiHKAI GWGCWC 3 cut(s) 180, 458, 604
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 29, 265, 516
BsmBI CGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 180, 458, 604
Bsp143I GATC 2 cut(s) 193, 197
BspACI CCGC 2 cut(s) 429, 461
BspCNI CTCAG 2 cut(s) 39, 270
BspDI ATCGAT 1 cut(s) 196
BspFNI CGCG 1 cut(s) 541
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 58
BssMI GATC 2 cut(s) 193, 197
Bst4CI ACNGT 2 cut(s) 482, 579
Bst6I CTCTTC 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 2 cut(s) 26, 257
BstF5I GGATG 4 cut(s) 136, 261, 355, 383
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 2 cut(s) 196, 200
BstMAI GTCTC 3 cut(s) 29, 265, 516
BstMBI GATC 2 cut(s) 193, 197
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 408, 498
Bsu15I ATCGAT 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 4 cut(s) 136, 261, 355, 383
BtsIMutI CAGTG 2 cut(s) 51, 478
Cac8I GCNNGC 1 cut(s) 458
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 543
ClaI ATCGAT 1 cut(s) 196
CseI GACGC 2 cut(s) 241, 484
Csp6I GTAC 2 cut(s) 310, 421
CviAII CATG 3 cut(s) 152, 214, 624
CviJI RGCY 7 cut(s) 59, 252, 323, 399, 456, 489, 570
CviKI_1 RGCY 7 cut(s) 59, 252, 323, 399, 456, 489, 570
CviQI GTAC 2 cut(s) 310, 421
DdeI CTNAG 2 cut(s) 26, 257
DpnI GATC 2 cut(s) 195, 199
DpnII GATC 2 cut(s) 193, 197
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 456
EcoRV GATATC 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 458
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 3 cut(s) 155, 217, 627
FaiI YATR 7 cut(s) 127, 129, 131, 153, 215, 494, 625
FatI CATG 3 cut(s) 151, 213, 623
FblI GTMKAC 2 cut(s) 230, 365
Fnu4HI GCNGC 3 cut(s) 397, 461, 487
FokI GGATG 4 cut(s) 123, 248, 342, 370
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 397, 461, 487
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 542
GluI GCNGC 3 cut(s) 397, 461, 487
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 75
HgaI GACGC 2 cut(s) 241, 484
HhaI GCGC 1 cut(s) 543
Hin1II CATG 3 cut(s) 155, 217, 627
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HincII GTYRAC 2 cut(s) 231, 366
HindII GTYRAC 2 cut(s) 231, 366
HinfI GANTC 4 cut(s) 242, 255, 273, 413
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 231, 366
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 4 cut(s) 152, 268, 331, 590
Hpy8I GTNNAC 2 cut(s) 231, 366
Hpy99I CGWCG 7 cut(s) 232, 235, 355, 367, 370, 406, 478
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 482, 579
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 223, 289, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 26, 257
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 155, 217, 627
HspAI GCGC 1 cut(s) 541
Kzo9I GATC 2 cut(s) 193, 197
LmnI GCTCC 2 cut(s) 56, 494
LpnPI CCDG 6 cut(s) 13, 39, 61, 406, 575, 597
Lsp1109I GCAGC 2 cut(s) 408, 498
LweI GCATC 3 cut(s) 270, 364, 530
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 11, 304
MalI GATC 2 cut(s) 195, 199
MboI GATC 2 cut(s) 193, 197
MboII GAAGA 2 cut(s) 92, 339
MhlI GDGCHC 3 cut(s) 180, 458, 604
MluCI AATT 1 cut(s) 171
MlyI GAGTC 4 cut(s) 236, 249, 267, 422
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 5 cut(s) 275, 334, 338, 369, 451
MseI TTAA 4 cut(s) 159, 317, 338, 617
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 2 cut(s) 193, 197
NlaIII CATG 3 cut(s) 155, 217, 627
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 304
PagI TCATGA 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 398, 462, 488
PleI GAGTC 4 cut(s) 236, 249, 267, 421
PpsI GAGTC 4 cut(s) 236, 249, 267, 421
Ppu21I YACGTR 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 2 cut(s) 311, 422
RsaNI GTAC 2 cut(s) 310, 421
SacI GAGCTC 1 cut(s) 458
SalI GTCGAC 2 cut(s) 229, 364
SaqAI TTAA 4 cut(s) 159, 317, 338, 617
SatI GCNGC 3 cut(s) 397, 461, 487
Sau3AI GATC 2 cut(s) 193, 197
SchI GAGTC 4 cut(s) 236, 249, 267, 422
SduI GDGCHC 3 cut(s) 180, 458, 604
SfaNI GCATC 3 cut(s) 270, 364, 530
SgrDI CGTCGACG 2 cut(s) 229, 364
SmlI CTYRAG 2 cut(s) 268, 329
SmoI CTYRAG 2 cut(s) 268, 329
Sse9I AATT 1 cut(s) 171
SsiI CCGC 2 cut(s) 429, 461
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 458
TaaI ACNGT 2 cut(s) 482, 579
TaiI ACGT 1 cut(s) 311
TaqI TCGA 5 cut(s) 78, 196, 230, 365, 572
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 463
Tru1I TTAA 4 cut(s) 159, 317, 338, 617
Tru9I TTAA 4 cut(s) 159, 317, 338, 617
TscAI CASTG 2 cut(s) 58, 485
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 396, 486
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 17, 21, 114
TspGWI ACGGA 5 cut(s) 292, 351, 433, 498, 504
TspRI CASTG 2 cut(s) 58, 485
Tth111I GACNNNGTC 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 230, 365
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.