pycom17g02010

Glucose-6-phosphate 1-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0020227
Physical Location & Seq
Reverse (-)
1264085 .. 1266166
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 921 bp
ATGCCGTTGAATATAGTGAATAAGGGTGATGGATTTCCCCGAATCATACTCACCGAGCCAACTGGTTCTTCAGCAGAGGTGCTTCTATATGGAGGGCAGGTTGTTTCATGGAAGAACGAAAGACGCGAAGAATTGCTCTTTATGAGTAGCAAAGCTACTTGGAAACCGCCTAAAGCGATCAGGGGAGGCATACCCGTCTGCTTTCCTCAGTTCGGAAATCTTGGTTCGCTGGAGCAGCATGGGTTTGCAAAGAACAGATTGTGGTCTGTTGATAGTAACCCTTCGCCTTTGGCTCCAACTAACAATCAGACGTCAGTGGATTTGATCTTGAAGTCTACAGAAGAGGATCTAAAGACCTGGCCGCGTAGCTTTGAGCTCCGGCTTCGTGTTTCTCTCAATGCTGGCAAGCTCACTTTGGTTCCCCGTGTTAGGAATACGGATAGCAAGGCCTTCTCCTTTACATTTGCCCTGATTAACTACTTACATGTATCAGATATCAGTGAAGTGCGTGTGGAGGGCTTGGAGACGCTTGATTATCTCGACAATCTGATGCGCAGAGAAAGGTTCACAGAGCAGGCAGATGCTATTACCTTTGATGAGGAGGTCAACCGAGTGTATTTGGGCACGCCTACAAAGATAGCCATGATAGACCACGAGAGGAAGAGAACCTTTGTTCTGCGGAAGGATGGCATGCGGGATGCAGTTGTGTGGAACCCTTGGGATAAAAAGGCCAAGACCATCCCTGATTTGGGAGATGAGGACTACAAAACCATGTTATGTGTAGATTCTGCGGCCATTGAAACCCCAATTTTCTTGAAGCCTTCCGAAGAGTGGAAGGGCCGTCAAGAACTCTCTACCGTTTCATCCAGCTATTGCAGTGGGCAGTTGGATCCTCGCATGGTTCTTCATGGCCTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

307

Amino Acids

34.74

Weight (kDa)

6.48

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 14 - 284 6.2e-62 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01590 AT3G01590 AT5G14500
malus_domestica MD17G1023600.v1.1
prunus_persica Prupe.3G292800_v2.0.a1
pyrus_communis pycom17g02010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 314
Acc16I TGCGCA 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 335
AccII CGCG 2 cut(s) 126, 364
AciI CCGC 5 cut(s) 167, 362, 679, 694, 791
AclWI GGATC 3 cut(s) 354, 884, 897
AcoI YGGCCR 2 cut(s) 359, 792
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 311
AfiI CCNNNNNNNGG 5 cut(s) 212, 429, 748, 749, 831
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 4 cut(s) 10, 331, 800, 817
AjnI CCWGG 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 5 cut(s) 155, 369, 376, 409, 870
AluI AGCT 5 cut(s) 155, 369, 376, 409, 870
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 3 cut(s) 354, 884, 897
AoxI GGCC 6 cut(s) 359, 447, 729, 792, 838, 910
ApeKI GCWGC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 1 cut(s) 838
AsuHPI GGTGA 2 cut(s) 38, 43
BaeGI GKGCMC 1 cut(s) 626
BamHI GGATCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 378
BauI CACGAG 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 247
BccI CCATC 3 cut(s) 23, 680, 746
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 518
BfmI CTRYAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 3 cut(s) 236, 362, 792
BlsI GCNGC 3 cut(s) 237, 363, 793
Bme1390I CCNGG 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 838
BmiI GGNNCC 4 cut(s) 294, 420, 713, 891
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 3 cut(s) 540, 571, 688
BpmI CTGGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 429, 748, 749, 831
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 4 cut(s) 691, 703, 738, 863
BseLI CCNNNNNNNGG 5 cut(s) 212, 429, 748, 749, 831
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 614
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 126, 364
BshFI GGCC 6 cut(s) 361, 449, 731, 794, 840, 912
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 5 cut(s) 212, 429, 748, 749, 831
BsmAI GTCTC 1 cut(s) 518
BsmBI CGTCTC 1 cut(s) 518
BsnI GGCC 6 cut(s) 361, 449, 731, 794, 840, 912
Bsp1286I GDGCHC 2 cut(s) 378, 626
Bsp143I GATC 4 cut(s) 177, 324, 346, 889
BspACI CCGC 5 cut(s) 167, 362, 679, 694, 791
BspANI GGCC 6 cut(s) 361, 449, 731, 794, 840, 912
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 2 cut(s) 126, 364
BspLI GGNNCC 4 cut(s) 294, 420, 713, 891
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 3 cut(s) 354, 884, 897
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 4 cut(s) 177, 324, 346, 889
BssNI GRCGYC 1 cut(s) 311
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 716
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 859
Bst6I CTCTTC 3 cut(s) 336, 656, 822
BstACI GRCGYC 1 cut(s) 311
BstC8I GCNNGC 5 cut(s) 403, 407, 576, 626, 692
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 4 cut(s) 691, 703, 738, 863
BstFNI CGCG 2 cut(s) 126, 364
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 4 cut(s) 180, 327, 349, 892
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 4 cut(s) 177, 324, 346, 889
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 2 cut(s) 488, 694
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 2 cut(s) 126, 364
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 2 cut(s) 346, 889
BstYI RGATCY 2 cut(s) 346, 889
BsuRI GGCC 6 cut(s) 361, 449, 731, 794, 840, 912
BtsCI GGATG 4 cut(s) 691, 703, 738, 863
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 3 cut(s) 321, 505, 883
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 5 cut(s) 403, 407, 576, 626, 692
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 838
CseI GACGC 2 cut(s) 132, 535
CviAII CATG 8 cut(s) 108, 239, 485, 643, 691, 772, 898, 908
DdeI CTNAG 1 cut(s) 207
DpnI GATC 4 cut(s) 179, 326, 348, 891
DpnII GATC 4 cut(s) 177, 324, 346, 889
EaeI YGGCCR 2 cut(s) 359, 792
Eam1104I CTCTTC 3 cut(s) 336, 656, 822
EarI CTCTTC 3 cut(s) 336, 656, 822
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 716
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 716
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 716
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 8 cut(s) 111, 242, 488, 646, 694, 775, 901, 911
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FatI CATG 8 cut(s) 107, 238, 484, 642, 690, 771, 897, 907
FauI CCCGC 1 cut(s) 687
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 236, 362, 792
FokI GGATG 4 cut(s) 698, 710, 725, 850
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 3 cut(s) 236, 362, 792
FspI TGCGCA 1 cut(s) 554
GlaI GCGC 1 cut(s) 554
GluI GCNGC 3 cut(s) 236, 362, 792
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 6 cut(s) 361, 449, 731, 794, 840, 912
HapII CCGG 1 cut(s) 379
HgaI GACGC 2 cut(s) 132, 535
HhaI GCGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 8 cut(s) 111, 242, 488, 646, 694, 775, 901, 911
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 2 cut(s) 42, 785
HpaII CCGG 1 cut(s) 379
HphI GGTGA 2 cut(s) 38, 43
Hpy166II GTNNAC 3 cut(s) 336, 567, 607
Hpy188I TCNGA 5 cut(s) 215, 309, 493, 549, 826
Hpy188III TCNNGA 4 cut(s) 328, 539, 814, 845
Hpy8I GTNNAC 3 cut(s) 336, 567, 607
HpyAV CCTTC 5 cut(s) 291, 460, 676, 829, 831
HpyCH4III ACNGT 1 cut(s) 859
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 248, 701, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 8 cut(s) 111, 242, 488, 646, 694, 775, 901, 911
HspAI GCGC 1 cut(s) 553
Kzo9I GATC 4 cut(s) 177, 324, 346, 889
LmnI GCTCC 3 cut(s) 232, 298, 381
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 3 cut(s) 540, 571, 688
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 275
MalI GATC 4 cut(s) 179, 326, 348, 891
MboI GATC 4 cut(s) 177, 324, 346, 889
MboII GAAGA 7 cut(s) 60, 124, 140, 353, 673, 839, 896
MflI RGATCY 2 cut(s) 346, 889
MhlI GDGCHC 2 cut(s) 378, 626
MluCI AATT 2 cut(s) 131, 807
MmeI TCCRAC 2 cut(s) 320, 867
MseI TTAA 1 cut(s) 474
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 2 cut(s) 126, 364
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 4 cut(s) 177, 324, 346, 889
NlaIII CATG 8 cut(s) 111, 242, 488, 646, 694, 775, 901, 911
NlaIV GGNNCC 4 cut(s) 294, 420, 713, 891
NsbI TGCGCA 1 cut(s) 554
NspI RCATGY 2 cut(s) 488, 694
PaeI GCATGC 1 cut(s) 694
PceI AGGCCT 1 cut(s) 449
PciI ACATGT 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 2 cut(s) 42, 785
PkrI GCNGC 3 cut(s) 237, 363, 793
PscI ACATGT 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 4 cut(s) 294, 420, 713, 891
PspPI GGNCC 1 cut(s) 838
PsuI RGATCY 2 cut(s) 346, 889
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 3 cut(s) 236, 362, 792
Sau3AI GATC 4 cut(s) 177, 324, 346, 889
Sau96I GGNCC 1 cut(s) 838
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 2 cut(s) 378, 626
SfaNI GCATC 3 cut(s) 540, 571, 688
SfcI CTRYAG 1 cut(s) 336
SphI GCATGC 1 cut(s) 694
Sse9I AATT 2 cut(s) 131, 807
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 5 cut(s) 167, 362, 679, 694, 791
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 1 cut(s) 859
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 540
TasI AATT 2 cut(s) 131, 807
TauI GCSGC 2 cut(s) 364, 794
TfiI GAWTC 2 cut(s) 42, 785
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 321, 505, 883
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 96, 852, 896
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 3 cut(s) 321, 505, 883
XceI RCATGY 2 cut(s) 488, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 335
ZraI GACGTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.