Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011705

Physical Location & Seq

Genomic Coordinates Forward (+)

1984200 .. 1986195

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAAGGGCATTTGTGTATGTGATTCTTGGAGGAGGGGTGGCTGCTGGGTATGCAGCTCTTGAATTCACCAAGAGAGGCATCTCCCGTGGTGAACTCTGCATCATCTCTGAAGAATCAGTTCCACCTTATGAGAGACCTGCTTTAAGCAAAGGCTTTCTACTTCCAGAAGCGCCTGCACGCCTGCCATCATTTCACACTTGTGTTGGTGCCAATGAGGAAAGGTTAACTGCAAAGTGGTATAAGGAGCACGGGGTCGAATTAGTTCTTGGAACTCGAGTCAAGTCTGTTGATGTGAGACGCAAGACACTACTGACGGGATCGGTCAAAGGAGACTATAAGTTACAAAATTCTCATTATTGCAACAGGTGCTCGGGCACTGAAGCTCGAAGAATTTGGAGTCAAGGGATCAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

9.57

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	7 - 111	3.5e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27820
fragaria_vesca	FvH4_6g50920 FvH4_6g50920
malus_domestica	MD09G1030800.v1.1 MD17G1032700.v1.1
prunus_persica	Prupe.3G286700_v2.0.a1
pyrus_communis	pycom111g02460 pycom17g03010 pycom17g03020
rosa_chinensis	RchiOBHm_Chr2g0172301
rosa_laevigata	RLG00000022103
rosa_multiflora	Rmu_sc0000467.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080000
rosa_rugosa	Rorug02G0558600
rosa_samantha	Rh2AG633600 Rh2BG647200 Rh2CG614100 Rh2DG662000
rosa_wichuraiana	Rw2G052460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	328, 416
AcsI	RAATTY	3 cut(s)	65, 349, 393
AcuI	CTGAAG	2 cut(s)	132, 402
AgsI	TTSAA	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	59, 386
AluI	AGCT	2 cut(s)	59, 386
Alw21I	GWGCWC	2 cut(s)	252, 374
Alw26I	GTCTC	3 cut(s)	130, 292, 327
AlwI	GGATC	2 cut(s)	328, 416
AlwNI	CAGNNNCTG	1 cut(s)	417
Ama87I	CYCGRG	2 cut(s)	276, 373
ApeKI	GCWGC	2 cut(s)	44, 56
ApoI	RAATTY	3 cut(s)	65, 349, 393
Asp700I	GAANNNNTTC	2 cut(s)	120, 264
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	61, 104
AvaI	CYCGRG	2 cut(s)	276, 373
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	252, 374
BbvI	GCAGC	2 cut(s)	31, 68
BccI	CCATC	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	130, 292, 327
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	45, 57
BlsI	GCNGC	2 cut(s)	46, 58
BmeT110I	CYCGRG	2 cut(s)	276, 373
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	2 cut(s)	90, 111
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
BseDI	CCNNGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	31, 68
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	252, 374
BsiHKCI	CYCGRG	2 cut(s)	276, 373
BsmAI	GTCTC	3 cut(s)	130, 292, 327
BsmBI	CGTCTC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	2 cut(s)	276, 373
Bsp1286I	GDGCHC	3 cut(s)	252, 374, 380
Bsp143I	GATC	2 cut(s)	320, 408
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	328, 416
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	320, 408
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	177, 181, 185
BstDSI	CCRYGG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	323, 411
BstMAI	GTCTC	3 cut(s)	130, 292, 327
BstMBI	GATC	2 cut(s)	320, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 369
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	31, 68
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	177, 181, 185
CaiI	CAGNNNCTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	175
CseI	GACGC	1 cut(s)	309
CviJI	RGCY	4 cut(s)	44, 59, 156, 386
CviKI_1	RGCY	4 cut(s)	44, 59, 156, 386
DpnI	GATC	2 cut(s)	322, 410
DpnII	GATC	2 cut(s)	320, 408
Eco31I	GGTCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	132, 402
Eco88I	CYCGRG	2 cut(s)	276, 373
EcoRI	GAATTC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	292
FaiI	YATR	5 cut(s)	21, 54, 132, 243, 339
Fnu4HI	GCNGC	2 cut(s)	45, 57
Fsp4HI	GCNGC	2 cut(s)	45, 57
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	45, 57
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	176
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	5 cut(s)	25, 116, 279, 400, 414
HpaI	GTTAAC	1 cut(s)	228
HphI	GGTGA	2 cut(s)	61, 104
Hpy166II	GTNNAC	2 cut(s)	95, 228
Hpy188I	TCNGA	3 cut(s)	112, 413, 419
Hpy188III	TCNNGA	2 cut(s)	62, 167
Hpy8I	GTNNAC	2 cut(s)	95, 228
HpyCH4V	TGCA	5 cut(s)	56, 102, 179, 233, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 369
HspAI	GCGC	1 cut(s)	173
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	320, 408
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	33, 153, 180, 189, 197, 352
Lsp1109I	GCAGC	2 cut(s)	31, 68
LweI	GCATC	2 cut(s)	90, 111
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	322, 410
MboI	GATC	2 cut(s)	320, 408
MboII	GAAGA	2 cut(s)	125, 402
MhlI	GDGCHC	3 cut(s)	252, 374, 380
MluCI	AATT	4 cut(s)	65, 260, 349, 393
MlyI	GAGTC	2 cut(s)	288, 409
MnlI	CCTC	4 cut(s)	26, 29, 71, 211
MroXI	GAANNNNTTC	2 cut(s)	120, 264
MseI	TTAA	2 cut(s)	146, 227
MslI	CAYNNNNRTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	53, 369
NdeII	GATC	2 cut(s)	320, 408
NlaIV	GGNNCC	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	120, 264
PfeI	GAWTC	3 cut(s)	25, 116, 414
PkrI	GCNGC	2 cut(s)	46, 58
PleI	GAGTC	2 cut(s)	287, 408
PpsI	GAGTC	2 cut(s)	287, 408
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	146, 227
SatI	GCNGC	2 cut(s)	45, 57
Sau3AI	GATC	2 cut(s)	320, 408
SchI	GAGTC	2 cut(s)	288, 409
SduI	GDGCHC	3 cut(s)	252, 374, 380
SetI	ASST	6 cut(s)	61, 130, 142, 227, 371, 388
SfaNI	GCATC	2 cut(s)	90, 111
Sfr274I	CTCGAG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	65, 260, 349, 393
TaqI	TCGA	3 cut(s)	258, 277, 388
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	4 cut(s)	65, 260, 349, 393
TfiI	GAWTC	3 cut(s)	25, 116, 414
Tru1I	TTAA	2 cut(s)	146, 227
Tru9I	TTAA	2 cut(s)	146, 227
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	44, 56
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	3 cut(s)	65, 349, 393
XhoI	CTCGAG	1 cut(s)	276
XmnI	GAANNNNTTC	2 cut(s)	120, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.