Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011705

Physical Location & Seq

Genomic Coordinates Forward (+)

1986336 .. 1987576

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAATGTAACGATGGTTTTTCCAGAAGAACATTGCATGGCCCGATTATTCACATCCAAGATCGCAAGTTTTTATGAAGAATTTTACAAATCCAAAGGAGTGAAGTTTGTTAAAGGAACCATTTTGTCCTCGTTTGACATTGACTCAGATGGGAAGGTGACTGCTGTTAATCTTAGAGATGGAAGTAGTCTTCCTGCAGACATGGTTGTTGTGGGAATAGGTATCCGTCCAAACACGAGCCTGTTTGAAGGTCAACTTACGCTGGAGAAAGGTGGTATCAAAGTGAATGGAAATATGCAGTCAAGCAATAGCTCAGTCTATGCAGTGGGAGATGTTGCCACATTTCCAGTCAAGGTATTTGGCGAGTCCCGAAGGCTTGAACACGTTGACTCAGCAAGAAAATCCGCAAGACATGCTGTTACTGCAATCATGGAACGACAACAAGTTGACGAATTCGACTACCTACCATTCTTTTACTCAAGAGTCTTCACCCTGTCTTGGCAGTTTTACGGGGACAATGTAGGAGATGTAGTCCATTTCGGAGACTTCTCAGGAGGCACATTCGGGGCCTATTGGGTAAAAAAAGGTCAACTTGTCGGGTCTTTTCTCGAAGGCGGAACCAAGGAAGAGTACGAAGCCATAGCCAAGGCCACCAAGCTGAAGCCAGAAGTTGAGGACCTAGCGGAGTTGGAAAGGCAGGGTTTACGTTTTGCAGTGACTGTTAGCCAGGAACCACCGCCATCATCACCACCGCCTCGTGATGTTATCAGTTCTGGCATTGTTCTGGAGAGGCCGATATACGCTTTTCATGCAACCGCTGGCGTTGTTGTGGCTGCATCGATAGCAGCGTTCGCGTATTGGTACGGAAGGAAGCGCCGGAGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

296

Amino Acids

32.66

Weight (kDa)

6.98

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	2 - 136	4.2e-24	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	155 - 238	5.7e-40	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27820
fragaria_vesca	FvH4_6g50920 FvH4_6g50920
malus_domestica	MD09G1030800.v1.1 MD17G1032700.v1.1
prunus_persica	Prupe.3G286700_v2.0.a1
pyrus_communis	pycom111g02460 pycom17g03010 pycom17g03020
rosa_chinensis	RchiOBHm_Chr2g0172301
rosa_laevigata	RLG00000022103
rosa_multiflora	Rmu_sc0000467.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080000
rosa_rugosa	Rorug02G0558600
rosa_samantha	Rh2AG633600 Rh2BG647200 Rh2CG614100 Rh2DG662000
rosa_wichuraiana	Rw2G052460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	854
AciI	CCGC	6 cut(s)	405, 615, 683, 737, 752, 816
AcsI	RAATTY	2 cut(s)	80, 452
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	2 cut(s)	632, 863
AfiI	CCNNNNNNNGG	1 cut(s)	498
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	248, 380
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	2 cut(s)	312, 658
AluI	AGCT	2 cut(s)	312, 658
Alw26I	GTCTC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	4 cut(s)	39, 567, 648, 791
ApeKI	GCWGC	2 cut(s)	833, 845
ApoI	RAATTY	2 cut(s)	80, 452
AspLEI	GCGC	1 cut(s)	876
AspS9I	GGNCC	3 cut(s)	40, 567, 676
AsuHPI	GGTGA	3 cut(s)	169, 481, 738
AvaII	GGWCC	1 cut(s)	676
BauI	CACGAG	2 cut(s)	235, 756
BbsI	GAAGAC	2 cut(s)	182, 478
BbvI	GCAGC	2 cut(s)	820, 857
BccI	CCATC	4 cut(s)	7, 143, 173, 748
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	877
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	834, 846
BlsI	GCNGC	2 cut(s)	835, 847
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	3 cut(s)	40, 567, 676
BmiI	GGNNCC	4 cut(s)	118, 568, 619, 732
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	1 cut(s)	845
BpiI	GAAGAC	2 cut(s)	182, 478
BpmI	CTGGAG	2 cut(s)	284, 806
BpuEI	CTTGAG	1 cut(s)	463
Bsa29I	ATCGAT	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	621, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	728
BseCI	ATCGAT	1 cut(s)	839
BseDI	CCNNGG	2 cut(s)	621, 645
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	4 cut(s)	159, 327, 405, 564
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	820, 857
Bsh1236I	CGCG	1 cut(s)	854
BshFI	GGCC	4 cut(s)	41, 569, 650, 793
BshVI	ATCGAT	1 cut(s)	839
BsiSI	CCGG	1 cut(s)	877
BslFI	GGGAC	2 cut(s)	352, 527
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	2 cut(s)	352, 527
BsnI	GGCC	4 cut(s)	41, 569, 650, 793
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	6 cut(s)	405, 615, 683, 737, 752, 816
BspANI	GGCC	4 cut(s)	41, 569, 650, 793
BspCNI	CTCAG	4 cut(s)	158, 326, 404, 563
BspDI	ATCGAT	1 cut(s)	839
BspFNI	CGCG	1 cut(s)	854
BspLI	GGNNCC	4 cut(s)	118, 568, 619, 732
BspMAI	CTGCAG	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	621, 645
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	2 cut(s)	235, 756
BssT1I	CCWWGG	2 cut(s)	621, 645
Bst2BI	CACGAG	2 cut(s)	235, 756
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	5 cut(s)	145, 173, 313, 391, 550
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	854
BstH2I	RGCGCY	1 cut(s)	877
BstHHI	GCGC	1 cut(s)	876
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 422, 809, 842, 851
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	854
BstV1I	GCAGC	2 cut(s)	820, 857
BstV2I	GAAGAC	2 cut(s)	182, 478
Bsu15I	ATCGAT	1 cut(s)	839
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	4 cut(s)	41, 569, 650, 793
BsuTUI	ATCGAT	1 cut(s)	839
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	2 cut(s)	330, 720
BtsIMutI	CAGTG	2 cut(s)	330, 720
Cac8I	GCNNGC	1 cut(s)	820
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	876
Cfr13I	GGNCC	3 cut(s)	40, 567, 676
ClaI	ATCGAT	1 cut(s)	839
Csp6I	GTAC	2 cut(s)	631, 862
CviAII	CATG	5 cut(s)	37, 202, 413, 430, 809
CviQI	GTAC	2 cut(s)	631, 862
DdeI	CTNAG	5 cut(s)	145, 173, 313, 391, 550
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	630
Eco130I	CCWWGG	2 cut(s)	621, 645
Eco47I	GGWCC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	680
EcoO109I	RGGNCCY	2 cut(s)	567, 676
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	2 cut(s)	621, 645
ErhI	CCWWGG	2 cut(s)	621, 645
FaeI	CATG	5 cut(s)	40, 205, 416, 433, 812
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 576, 608
FaqI	GGGAC	2 cut(s)	352, 527
FatI	CATG	5 cut(s)	36, 201, 412, 429, 808
Fnu4HI	GCNGC	2 cut(s)	834, 846
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	834, 846
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	2 cut(s)	834, 846
GsuI	CTGGAG	2 cut(s)	284, 806
HaeII	RGCGCY	1 cut(s)	877
HaeIII	GGCC	4 cut(s)	41, 569, 650, 793
HapII	CCGG	1 cut(s)	877
HhaI	GCGC	1 cut(s)	876
Hin1II	CATG	5 cut(s)	40, 205, 416, 433, 812
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HincII	GTYRAC	4 cut(s)	254, 388, 448, 590
HindII	GTYRAC	4 cut(s)	254, 388, 448, 590
HinfI	GANTC	4 cut(s)	143, 365, 389, 483
HpaII	CCGG	1 cut(s)	877
HphI	GGTGA	3 cut(s)	169, 481, 738
Hpy166II	GTNNAC	5 cut(s)	254, 388, 448, 590, 704
Hpy188I	TCNGA	2 cut(s)	148, 542
Hpy188III	TCNNGA	7 cut(s)	23, 369, 480, 552, 608, 758, 785
Hpy8I	GTNNAC	5 cut(s)	254, 388, 448, 590, 704
HpyAV	CCTTC	5 cut(s)	148, 242, 366, 605, 861
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	384, 706
HpyCH4V	TGCA	8 cut(s)	36, 197, 298, 323, 425, 713, 812, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 422, 809, 842, 851
HpyF3I	CTNAG	5 cut(s)	145, 173, 313, 391, 550
HpySE526I	ACGT	2 cut(s)	384, 706
Hsp92II	CATG	5 cut(s)	40, 205, 416, 433, 812
HspAI	GCGC	1 cut(s)	874
Kzo9I	GATC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	820, 857
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	2 cut(s)	384, 706
MaeIII	GTNAC	4 cut(s)	7, 157, 418, 715
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	5 cut(s)	38, 89, 182, 478, 638
MluCI	AATT	2 cut(s)	80, 452
MlyI	GAGTC	4 cut(s)	137, 374, 383, 492
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	6 cut(s)	139, 548, 667, 765, 783, 873
MseI	TTAA	2 cut(s)	111, 168
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	1 cut(s)	877
MspR9I	CCNGG	1 cut(s)	728
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	854
MwoI	GCNNNNNNNGC	5 cut(s)	413, 422, 809, 842, 851
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	40, 205, 416, 433, 812
NlaIV	GGNNCC	4 cut(s)	118, 568, 619, 732
NmuCI	GTSAC	2 cut(s)	157, 715
NspI	RCATGY	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PkrI	GCNGC	2 cut(s)	835, 847
PleI	GAGTC	4 cut(s)	137, 373, 383, 491
PpsI	GAGTC	4 cut(s)	137, 373, 383, 491
PpuMI	RGGWCCY	1 cut(s)	676
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	4 cut(s)	118, 568, 619, 732
PspPI	GGNCC	3 cut(s)	40, 567, 676
PspPPI	RGGWCCY	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	632, 863
RsaNI	GTAC	2 cut(s)	631, 862
SaqAI	TTAA	2 cut(s)	111, 168
SatI	GCNGC	2 cut(s)	834, 846
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	3 cut(s)	40, 567, 676
SchI	GAGTC	4 cut(s)	137, 374, 383, 492
ScrFI	CCNGG	1 cut(s)	728
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	2 cut(s)	80, 452
SsiI	CCGC	6 cut(s)	405, 615, 683, 737, 752, 816
SspMI	CTAG	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	2 cut(s)	621, 645
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	387, 709
TaqI	TCGA	3 cut(s)	456, 609, 839
TasI	AATT	2 cut(s)	80, 452
Tru1I	TTAA	2 cut(s)	111, 168
Tru9I	TTAA	2 cut(s)	111, 168
TscAI	CASTG	2 cut(s)	330, 720
TseFI	GTSAC	2 cut(s)	157, 715
TseI	GCWGC	2 cut(s)	833, 845
Tsp45I	GTSAC	2 cut(s)	157, 715
TspDTI	ATGAA	3 cut(s)	17, 90, 797
TspGWI	ACGGA	2 cut(s)	215, 879
TspRI	CASTG	2 cut(s)	330, 720
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	2 cut(s)	80, 452
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.