TFIIS helical bundle-like domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g50290 FvH4_6g50290 FvH4_6g50290 FvH4_6g50290 FvH4_6g50290 |
| malus_domestica | MD09G1037500.v1.1 MD17G1038800.v1.1 |
| prunus_persica | Prupe.3G280200_v2.0.a1 Prupe.3G280200_v2.0.a1 |
| pyrus_communis | pycom111g03010 pycom17g03500 |
| rosa_chinensis | RchiOBHm_Chr2g0170611 |
| rosa_laevigata | RLG00000021968 |
| rosa_multiflora | Rmu_sc0003787.1_g000033 Rmu_sc0010307.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00081180 |
| rosa_rugosa | Rorug02G0549700 |
| rosa_samantha | Rh2AG622000 Rh2BG633300 Rh2CG602600 Rh2DG646100 |
| rosa_wichuraiana | Rw2G051570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2538 |
| Acc36I | ACCTGC | 4 cut(s) | 223, 307, 670, 2538 |
| AccB1I | GGYRCC | 1 cut(s) | 1880 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 808, 1859, 2540 |
| AccI | GTMKAC | 1 cut(s) | 769 |
| AccIII | TCCGGA | 1 cut(s) | 3139 |
| AciI | CCGC | 3 cut(s) | 54, 2574, 2961 |
| AclI | AACGTT | 1 cut(s) | 676 |
| AclWI | GGATC | 5 cut(s) | 1222, 1458, 1898, 2752, 3131 |
| AcoI | YGGCCR | 1 cut(s) | 847 |
| AcsI | RAATTY | 9 cut(s) | 87, 1016, 1192, 1456, 1638, 2275, 2350, 2602, 3337 |
| AcuI | CTGAAG | 8 cut(s) | 837, 1242, 1467, 1824, 2070, 2673, 2760, 2847 |
| AdeI | CACNNNGTG | 1 cut(s) | 2258 |
| AfaI | GTAC | 3 cut(s) | 1738, 2245, 2812 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 143, 265, 808, 1700, 1859, 1877, 2444, 2540, 2994 |
| AflIII | ACRYGT | 2 cut(s) | 1174, 3043 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1841 |
| AjnI | CCWGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 824, 856, 2847, 2879 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1510, 1542, 1564, 1596 |
| Alw21I | GWGCWC | 5 cut(s) | 109, 1042, 1610, 2364, 2482 |
| Alw26I | GTCTC | 7 cut(s) | 247, 1196, 1542, 1695, 1926, 2760, 3107 |
| Alw44I | GTGCAC | 3 cut(s) | 105, 1038, 2360 |
| AlwI | GGATC | 5 cut(s) | 1222, 1458, 1898, 2752, 3131 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 881, 2837, 3356 |
| Ama87I | CYCGRG | 2 cut(s) | 1875, 3162 |
| Aor13HI | TCCGGA | 1 cut(s) | 3139 |
| AoxI | GGCC | 4 cut(s) | 5, 847, 1238, 1721 |
| ApaLI | GTGCAC | 3 cut(s) | 105, 1038, 2360 |
| ApeKI | GCWGC | 9 cut(s) | 254, 302, 1072, 1521, 2076, 2294, 2831, 3083, 3259 |
| ApoI | RAATTY | 9 cut(s) | 87, 1016, 1192, 1456, 1638, 2275, 2350, 2602, 3337 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 78, 110 |
| AseI | ATTAAT | 1 cut(s) | 444 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3012 |
| AspLEI | GCGC | 2 cut(s) | 1072, 1810 |
| AspS9I | GGNCC | 1 cut(s) | 1721 |
| AsuNHI | GCTAGC | 2 cut(s) | 2281, 2285 |
| AvaI | CYCGRG | 2 cut(s) | 1875, 3162 |
| AxyI | CCTNAGG | 2 cut(s) | 1699, 1885 |
| BaeGI | GKGCMC | 3 cut(s) | 109, 1042, 2364 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3345, 3378 |
| BanI | GGYRCC | 1 cut(s) | 1880 |
| BanII | GRGCYC | 3 cut(s) | 656, 1610, 3029 |
| BauI | CACGAG | 2 cut(s) | 284, 2363 |
| Bbv12I | GWGCWC | 5 cut(s) | 109, 1042, 1610, 2364, 2482 |
| BbvI | GCAGC | 9 cut(s) | 241, 289, 1059, 1533, 2088, 2281, 2843, 3070, 3271 |
| BceAI | ACGGC | 2 cut(s) | 799, 3335 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 495, 529 |
| BciT130I | CCWGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| BciVI | GTATCC | 1 cut(s) | 1795 |
| BcoDI | GTCTC | 7 cut(s) | 247, 1196, 1542, 1695, 1926, 2760, 3107 |
| BfmI | CTRYAG | 5 cut(s) | 33, 1073, 1929, 2964, 3209 |
| BfoI | RGCGCY | 1 cut(s) | 1811 |
| BfuAI | ACCTGC | 4 cut(s) | 223, 307, 670, 2538 |
| BfuI | GTATCC | 1 cut(s) | 1795 |
| BglII | AGATCT | 1 cut(s) | 1486 |
| BisI | GCNGC | 9 cut(s) | 255, 303, 1073, 1522, 2077, 2295, 2832, 3084, 3260 |
| BlsI | GCNGC | 9 cut(s) | 256, 304, 1074, 1523, 2078, 2296, 2833, 3085, 3261 |
| Bme1390I | CCNGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1841 |
| BmeT110I | CYCGRG | 2 cut(s) | 1875, 3162 |
| BmgT120I | GGNCC | 1 cut(s) | 1721 |
| BmiI | GGNNCC | 6 cut(s) | 947, 1053, 1882, 2140, 2700, 3410 |
| BmrFI | CCNGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| BmrI | ACTGGG | 1 cut(s) | 2414 |
| BmtI | GCTAGC | 2 cut(s) | 2285, 2289 |
| BmuI | ACTGGG | 1 cut(s) | 2414 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1295, 1327, 2338, 2370 |
| BpmI | CTGGAG | 4 cut(s) | 345, 1064, 1392, 2319 |
| BpuEI | CTTGAG | 3 cut(s) | 1254, 2671, 2874 |
| Bsa29I | ATCGAT | 1 cut(s) | 3439 |
| BsaAI | YACGTR | 1 cut(s) | 1112 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2664 |
| BsaI | GGTCTC | 2 cut(s) | 247, 1695 |
| BsaJI | CCNNGG | 8 cut(s) | 123, 362, 898, 1403, 1822, 2342, 3219, 3342 |
| BsaWI | WCCGGW | 1 cut(s) | 3139 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1365, 1395, 1510, 1540, 1906, 1936 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 143, 265, 808, 1700, 1859, 1877, 2444, 2540, 2994 |
| Bse118I | RCCGGY | 2 cut(s) | 1616, 3086 |
| Bse21I | CCTNAGG | 2 cut(s) | 1699, 1885 |
| Bse3DI | GCAATG | 3 cut(s) | 1681, 2065, 2489 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2664 |
| BseAI | TCCGGA | 1 cut(s) | 3139 |
| BseBI | CCWGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| BseCI | ATCGAT | 1 cut(s) | 3439 |
| BseDI | CCNNGG | 8 cut(s) | 123, 362, 898, 1403, 1822, 2342, 3219, 3342 |
| BseJI | GATNNNNATC | 1 cut(s) | 2664 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 143, 265, 808, 1700, 1859, 1877, 2444, 2540, 2994 |
| BseMI | GCAATG | 3 cut(s) | 1681, 2065, 2489 |
| BseRI | GAGGAG | 3 cut(s) | 657, 1341, 1914 |
| BseSI | GKGCMC | 3 cut(s) | 109, 1042, 2364 |
| BseXI | GCAGC | 9 cut(s) | 241, 289, 1059, 1533, 2088, 2281, 2843, 3070, 3271 |
| BseYI | CCCAGC | 1 cut(s) | 1274 |
| BsgI | GTGCAG | 2 cut(s) | 403, 530 |
| BshFI | GGCC | 4 cut(s) | 7, 849, 1240, 1723 |
| BshNI | GGYRCC | 1 cut(s) | 1880 |
| BshVI | ATCGAT | 1 cut(s) | 3439 |
| BsiHKAI | GWGCWC | 5 cut(s) | 109, 1042, 1610, 2364, 2482 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1875, 3162 |
| BsiSI | CCGG | 3 cut(s) | 1617, 3087, 3140 |
| BslFI | GGGAC | 1 cut(s) | 3322 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 143, 265, 808, 1700, 1859, 1877, 2444, 2540, 2994 |
| BsmAI | GTCTC | 7 cut(s) | 247, 1196, 1542, 1695, 1926, 2760, 3107 |
| BsmBI | CGTCTC | 1 cut(s) | 1926 |
| BsmFI | GGGAC | 1 cut(s) | 3322 |
| BsmI | GAATGC | 2 cut(s) | 332, 2206 |
| BsnI | GGCC | 4 cut(s) | 7, 849, 1240, 1723 |
| Bso31I | GGTCTC | 2 cut(s) | 247, 1695 |
| BsoBI | CYCGRG | 2 cut(s) | 1875, 3162 |
| Bsp1286I | GDGCHC | 7 cut(s) | 109, 656, 1042, 1610, 2364, 2482, 3029 |
| Bsp13I | TCCGGA | 1 cut(s) | 3139 |
| Bsp19I | CCATGG | 1 cut(s) | 1822 |
| BspACI | CCGC | 3 cut(s) | 54, 2574, 2961 |
| BspANI | GGCC | 4 cut(s) | 7, 849, 1240, 1723 |
| BspDI | ATCGAT | 1 cut(s) | 3439 |
| BspEI | TCCGGA | 1 cut(s) | 3139 |
| BspHI | TCATGA | 1 cut(s) | 2758 |
| BspLI | GGNNCC | 6 cut(s) | 947, 1053, 1882, 2140, 2700, 3410 |
| BspMAI | CTGCAG | 2 cut(s) | 1077, 1933 |
| BspMI | ACCTGC | 4 cut(s) | 223, 307, 670, 2538 |
| BspOI | GCTAGC | 2 cut(s) | 2285, 2289 |
| BspPI | GGATC | 5 cut(s) | 1222, 1458, 1898, 2752, 3131 |
| BspT107I | GGYRCC | 1 cut(s) | 1880 |
| BspTNI | GGTCTC | 2 cut(s) | 247, 1695 |
| BsrDI | GCAATG | 3 cut(s) | 1681, 2065, 2489 |
| BsrFI | RCCGGY | 2 cut(s) | 1616, 3086 |
| BssAI | RCCGGY | 2 cut(s) | 1616, 3086 |
| BssECI | CCNNGG | 8 cut(s) | 123, 362, 898, 1403, 1822, 2342, 3219, 3342 |
| BssSI | CACGAG | 2 cut(s) | 284, 2363 |
| BssT1I | CCWWGG | 4 cut(s) | 898, 1822, 3219, 3342 |
| Bst2BI | CACGAG | 2 cut(s) | 284, 2363 |
| Bst2UI | CCWGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| Bst4CI | ACNGT | 9 cut(s) | 34, 104, 915, 1381, 1777, 2477, 2800, 3200, 3234 |
| Bst6I | CTCTTC | 1 cut(s) | 2993 |
| BstBAI | YACGTR | 1 cut(s) | 1112 |
| BstC8I | GCNNGC | 4 cut(s) | 847, 1251, 2283, 2287 |
| BstDSI | CCRYGG | 1 cut(s) | 1822 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1698, 1875, 2442 |
| BstH2I | RGCGCY | 1 cut(s) | 1811 |
| BstHHI | GCGC | 2 cut(s) | 1072, 1810 |
| BstMAI | GTCTC | 7 cut(s) | 247, 1196, 1542, 1695, 1926, 2760, 3107 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 821, 1246, 1317, 1530, 1557, 1880, 2129, 2291, 3167 |
| BstNI | CCWGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| BstNSI | RCATGY | 2 cut(s) | 1253, 3047 |
| BstSCI | CCNGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| BstSFI | CTRYAG | 5 cut(s) | 33, 1073, 1929, 2964, 3209 |
| BstSLI | GKGCMC | 3 cut(s) | 109, 1042, 2364 |
| BstSNI | TACGTA | 1 cut(s) | 1112 |
| BstV1I | GCAGC | 9 cut(s) | 241, 289, 1059, 1533, 2088, 2281, 2843, 3070, 3271 |
| BstX2I | RGATCY | 5 cut(s) | 1214, 1486, 1903, 2744, 3136 |
| BstYI | RGATCY | 5 cut(s) | 1214, 1486, 1903, 2744, 3136 |
| Bsu15I | ATCGAT | 1 cut(s) | 3439 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1699, 1885 |
| BsuI | GTATCC | 1 cut(s) | 1795 |
| BsuRI | GGCC | 4 cut(s) | 7, 849, 1240, 1723 |
| BsuTUI | ATCGAT | 1 cut(s) | 3439 |
| BtgI | CCRYGG | 1 cut(s) | 1822 |
| BtgZI | GCGATG | 3 cut(s) | 1989, 2509, 2652 |
| BtsI | GCAGTG | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 7 cut(s) | 513, 920, 1040, 1654, 1857, 2402, 2482 |
| BveI | ACCTGC | 4 cut(s) | 223, 307, 670, 2538 |
| Cac8I | GCNNGC | 4 cut(s) | 847, 1251, 2283, 2287 |
| CaiI | CAGNNNCTG | 3 cut(s) | 881, 2837, 3356 |
| CciI | TCATGA | 1 cut(s) | 2758 |
| CfoI | GCGC | 2 cut(s) | 1072, 1810 |
| Cfr10I | RCCGGY | 2 cut(s) | 1616, 3086 |
| Cfr13I | GGNCC | 1 cut(s) | 1721 |
| ClaI | ATCGAT | 1 cut(s) | 3439 |
| CseI | GACGC | 1 cut(s) | 1908 |
| Csp6I | GTAC | 3 cut(s) | 1737, 2244, 2811 |
| CviQI | GTAC | 3 cut(s) | 1737, 2244, 2811 |
| DraIII | CACNNNGTG | 1 cut(s) | 2258 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1841 |
| EaeI | YGGCCR | 1 cut(s) | 847 |
| Eam1104I | CTCTTC | 1 cut(s) | 2993 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1841 |
| EarI | CTCTTC | 1 cut(s) | 2993 |
| Ecl136II | GAGCTC | 1 cut(s) | 1608 |
| Eco105I | TACGTA | 1 cut(s) | 1112 |
| Eco130I | CCWWGG | 4 cut(s) | 898, 1822, 3219, 3342 |
| Eco24I | GRGCYC | 3 cut(s) | 656, 1610, 3029 |
| Eco31I | GGTCTC | 2 cut(s) | 247, 1695 |
| Eco32I | GATATC | 1 cut(s) | 369 |
| Eco53kI | GAGCTC | 1 cut(s) | 1608 |
| Eco57I | CTGAAG | 8 cut(s) | 837, 1242, 1467, 1824, 2070, 2673, 2760, 2847 |
| Eco81I | CCTNAGG | 2 cut(s) | 1699, 1885 |
| Eco88I | CYCGRG | 2 cut(s) | 1875, 3162 |
| EcoICRI | GAGCTC | 1 cut(s) | 1608 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1698, 1875, 2442 |
| EcoRI | GAATTC | 2 cut(s) | 2350, 3337 |
| EcoRII | CCWGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| EcoRV | GATATC | 1 cut(s) | 369 |
| EcoT14I | CCWWGG | 4 cut(s) | 898, 1822, 3219, 3342 |
| EcoT22I | ATGCAT | 3 cut(s) | 501, 1255, 2020 |
| EcoT38I | GRGCYC | 3 cut(s) | 656, 1610, 3029 |
| ErhI | CCWWGG | 4 cut(s) | 898, 1822, 3219, 3342 |
| Esp3I | CGTCTC | 1 cut(s) | 1926 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1741, 1773, 3000, 3032, 3356, 3388 |
| FaqI | GGGAC | 1 cut(s) | 3322 |
| FauI | CCCGC | 1 cut(s) | 2567 |
| FauNDI | CATATG | 1 cut(s) | 2566 |
| FblI | GTMKAC | 1 cut(s) | 769 |
| Fnu4HI | GCNGC | 9 cut(s) | 255, 303, 1073, 1522, 2077, 2295, 2832, 3084, 3260 |
| FriOI | GRGCYC | 3 cut(s) | 656, 1610, 3029 |
| Fsp4HI | GCNGC | 9 cut(s) | 255, 303, 1073, 1522, 2077, 2295, 2832, 3084, 3260 |
| GlaI | GCGC | 2 cut(s) | 1071, 1809 |
| GluI | GCNGC | 9 cut(s) | 255, 303, 1073, 1522, 2077, 2295, 2832, 3084, 3260 |
| GsaI | CCCAGC | 1 cut(s) | 1278 |
| GsuI | CTGGAG | 4 cut(s) | 345, 1064, 1392, 2319 |
| HaeII | RGCGCY | 1 cut(s) | 1811 |
| HaeIII | GGCC | 4 cut(s) | 7, 849, 1240, 1723 |
| HapII | CCGG | 3 cut(s) | 1617, 3087, 3140 |
| HgaI | GACGC | 1 cut(s) | 1908 |
| HhaI | GCGC | 2 cut(s) | 1072, 1810 |
| Hin6I | GCGC | 2 cut(s) | 1070, 1808 |
| HinP1I | GCGC | 2 cut(s) | 1070, 1808 |
| HincII | GTYRAC | 5 cut(s) | 426, 1410, 1912, 2435, 3196 |
| HindII | GTYRAC | 5 cut(s) | 426, 1410, 1912, 2435, 3196 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HpaI | GTTAAC | 2 cut(s) | 426, 1912 |
| HpaII | CCGG | 3 cut(s) | 1617, 3087, 3140 |
| HpyAV | CCTTC | 9 cut(s) | 76, 347, 812, 1042, 1344, 1705, 2715, 2735, 3170 |
| HpyCH4III | ACNGT | 9 cut(s) | 34, 104, 915, 1381, 1777, 2477, 2800, 3200, 3234 |
| HpyCH4IV | ACGT | 4 cut(s) | 181, 676, 1111, 1174 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 821, 1246, 1317, 1530, 1557, 1880, 2129, 2291, 3167 |
| HpySE526I | ACGT | 4 cut(s) | 181, 676, 1111, 1174 |
| HspAI | GCGC | 2 cut(s) | 1070, 1808 |
| Kpn2I | TCCGGA | 1 cut(s) | 3139 |
| KspAI | GTTAAC | 2 cut(s) | 426, 1912 |
| LmnI | GCTCC | 8 cut(s) | 951, 1278, 1518, 1605, 2198, 2698, 2805, 3408 |
| Lsp1109I | GCAGC | 9 cut(s) | 241, 289, 1059, 1533, 2088, 2281, 2843, 3070, 3271 |
| MaeII | ACGT | 4 cut(s) | 181, 676, 1111, 1174 |
| MaeIII | GTNAC | 7 cut(s) | 98, 309, 877, 1115, 2325, 3089, 3228 |
| MfeI | CAATTG | 1 cut(s) | 409 |
| MflI | RGATCY | 5 cut(s) | 1214, 1486, 1903, 2744, 3136 |
| MhlI | GDGCHC | 7 cut(s) | 109, 656, 1042, 1610, 2364, 2482, 3029 |
| MlyI | GAGTC | 7 cut(s) | 710, 2480, 2684, 2773, 2993, 3059, 3236 |
| MmeI | TCCRAC | 5 cut(s) | 45, 66, 826, 870, 1759 |
| Mph1103I | ATGCAT | 3 cut(s) | 501, 1255, 2020 |
| MroI | TCCGGA | 1 cut(s) | 3139 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3012 |
| MslI | CAYNNNNRTG | 4 cut(s) | 288, 379, 2494, 2707 |
| MspA1I | CMGCKG | 1 cut(s) | 2963 |
| MspI | CCGG | 3 cut(s) | 1617, 3087, 3140 |
| MspR9I | CCNGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| MunI | CAATTG | 1 cut(s) | 409 |
| Mva1269I | GAATGC | 2 cut(s) | 332, 2206 |
| MvaI | CCWGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 821, 1246, 1317, 1530, 1557, 1880, 2129, 2291, 3167 |
| NcoI | CCATGG | 1 cut(s) | 1822 |
| NdeI | CATATG | 1 cut(s) | 2566 |
| NheI | GCTAGC | 2 cut(s) | 2281, 2285 |
| NlaIV | GGNNCC | 6 cut(s) | 947, 1053, 1882, 2140, 2700, 3410 |
| NmuCI | GTSAC | 4 cut(s) | 98, 2325, 3089, 3228 |
| NsiI | ATGCAT | 3 cut(s) | 501, 1255, 2020 |
| NspI | RCATGY | 2 cut(s) | 1253, 3047 |
| PaeI | GCATGC | 1 cut(s) | 1253 |
| PaeR7I | CTCGAG | 1 cut(s) | 1875 |
| PagI | TCATGA | 1 cut(s) | 2758 |
| PaqCI | CACCTGC | 1 cut(s) | 2538 |
| PciI | ACATGT | 1 cut(s) | 3043 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1241 |
| PctI | GAATGC | 2 cut(s) | 332, 2206 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3012 |
| PfeI | GAWTC | 6 cut(s) | 62, 128, 1060, 2369, 2924, 3299 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 808, 1859, 2540 |
| PkrI | GCNGC | 9 cut(s) | 256, 304, 1074, 1523, 2078, 2296, 2833, 3085, 3261 |
| PleI | GAGTC | 7 cut(s) | 709, 2480, 2683, 2773, 2992, 3058, 3235 |
| PpsI | GAGTC | 7 cut(s) | 709, 2480, 2683, 2773, 2992, 3058, 3235 |
| Ppu21I | YACGTR | 1 cut(s) | 1112 |
| PscI | ACATGT | 1 cut(s) | 3043 |
| PshBI | ATTAAT | 1 cut(s) | 444 |
| Psp124BI | GAGCTC | 1 cut(s) | 1610 |
| Psp1406I | AACGTT | 1 cut(s) | 676 |
| Psp6I | CCWGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| PspFI | CCCAGC | 1 cut(s) | 1274 |
| PspGI | CCWGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| PspN4I | GGNNCC | 6 cut(s) | 947, 1053, 1882, 2140, 2700, 3410 |
| PspPI | GGNCC | 1 cut(s) | 1721 |
| PspXI | VCTCGAGB | 1 cut(s) | 1875 |
| PstI | CTGCAG | 2 cut(s) | 1077, 1933 |
| PstNI | CAGNNNCTG | 3 cut(s) | 881, 2837, 3356 |
| PsuI | RGATCY | 5 cut(s) | 1214, 1486, 1903, 2744, 3136 |
| RsaI | GTAC | 3 cut(s) | 1738, 2245, 2812 |
| RsaNI | GTAC | 3 cut(s) | 1737, 2244, 2811 |
| RseI | CAYNNNNRTG | 4 cut(s) | 288, 379, 2494, 2707 |
| SacI | GAGCTC | 1 cut(s) | 1610 |
| SatI | GCNGC | 9 cut(s) | 255, 303, 1073, 1522, 2077, 2295, 2832, 3084, 3260 |
| Sau96I | GGNCC | 1 cut(s) | 1721 |
| SchI | GAGTC | 7 cut(s) | 710, 2480, 2684, 2773, 2993, 3059, 3236 |
| ScrFI | CCNGG | 6 cut(s) | 125, 363, 1404, 1725, 2343, 2670 |
| SduI | GDGCHC | 7 cut(s) | 109, 656, 1042, 1610, 2364, 2482, 3029 |
| SfcI | CTRYAG | 5 cut(s) | 33, 1073, 1929, 2964, 3209 |
| Sfr274I | CTCGAG | 1 cut(s) | 1875 |
| SlaI | CTCGAG | 1 cut(s) | 1875 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 288, 379, 2494, 2707 |
| SmlI | CTYRAG | 4 cut(s) | 1269, 1875, 2650, 2889 |
| SmoI | CTYRAG | 4 cut(s) | 1269, 1875, 2650, 2889 |
| SnaBI | TACGTA | 1 cut(s) | 1112 |
| SphI | GCATGC | 1 cut(s) | 1253 |
| SsiI | CCGC | 3 cut(s) | 54, 2574, 2961 |
| SspI | AATATT | 1 cut(s) | 165 |
| SstI | GAGCTC | 1 cut(s) | 1610 |
| StyD4I | CCNGG | 6 cut(s) | 123, 361, 1402, 1723, 2341, 2668 |
| StyI | CCWWGG | 4 cut(s) | 898, 1822, 3219, 3342 |
| TaaI | ACNGT | 9 cut(s) | 34, 104, 915, 1381, 1777, 2477, 2800, 3200, 3234 |
| TaiI | ACGT | 4 cut(s) | 184, 679, 1114, 1177 |
| TaqI | TCGA | 5 cut(s) | 211, 1343, 1876, 3375, 3439 |
| TatI | WGTACW | 1 cut(s) | 2810 |
| TfiI | GAWTC | 6 cut(s) | 62, 128, 1060, 2369, 2924, 3299 |
| TscAI | CASTG | 7 cut(s) | 513, 920, 1047, 1654, 1864, 2409, 2482 |
| TseFI | GTSAC | 4 cut(s) | 98, 2325, 3089, 3228 |
| TseI | GCWGC | 9 cut(s) | 254, 302, 1072, 1521, 2076, 2294, 2831, 3083, 3259 |
| Tsp45I | GTSAC | 4 cut(s) | 98, 2325, 3089, 3228 |
| TspGWI | ACGGA | 1 cut(s) | 770 |
| TspRI | CASTG | 7 cut(s) | 513, 920, 1047, 1654, 1864, 2409, 2482 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 808, 1859, 2540 |
| VneI | GTGCAC | 3 cut(s) | 105, 1038, 2360 |
| VspI | ATTAAT | 1 cut(s) | 444 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1698, 1875, 2442 |
| XapI | RAATTY | 9 cut(s) | 87, 1016, 1192, 1456, 1638, 2275, 2350, 2602, 3337 |
| XceI | RCATGY | 2 cut(s) | 1253, 3047 |
| XhoI | CTCGAG | 1 cut(s) | 1875 |
| XmiI | GTMKAC | 1 cut(s) | 769 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3012 |
| Zsp2I | ATGCAT | 3 cut(s) | 501, 1255, 2020 |