Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013862

Physical Location & Seq

Genomic Coordinates Reverse (-)

2592519 .. 2597049

Gene Structure 4531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGCGCAGAAATCAGTATGAAGAAAGTCTGTTCAGATGTGAGGATGATAGGTTTGAGTTGGATATGTTGTTAGAGTCGGTGAGCTCAACTGCTAAGCGAGCAGAGGAACTCTTGAACAGCATCAATGAAAATAAGATCAGCATGGAAACTGGAATCTGTATTGAAGACCACTTCACTGCTTTAAACTTAAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAATCCAACTCTGGCTTTGCCTGTTGTATTAACTCGCCTGAAACAGAAACAAGATGAATGGACAAGGTGTAGATCTGATTTTAACAAGGTTTGGGCAGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCCAAGAACTTGAGTAGCAAATCTTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAGCAGATAGAGGATGATATCCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATATGGAGTATGAATACTTAGATATGAGCTTACATGAAGACTTGTATAAACTTGTCCAATATTCATGTGAAGAGGTTTTCTCAACGAAAGAACAATTAAATAAGGCTATGAGACTTTACACTACCATTTTGGAGCCAATGTTGGGTGTTTCTTCTCGACCCAATGATTCAGAGGATGATGAAGATGTCGACAAAAGTAGGAATCAGGCTAAGAATTGTACTGCATCGAGCATAGGAGAAAGCGATGGAAGTCCTGGTGGCGATTCTGCCACAGTAAATCTTAAGCAGCCCAAATCTGTGTGTAATGAAGAAGGAAATGCTTTAGCAGAAGTTGAAAGTTTGGCTAACGGGGATAACTCAGCTAAAGAAGATGGAAGTCGTGATGCACATCCTGTCTCTAGGAAGGATTCCACATCTGAGAAACTTCAACTAGAGAGAGACCAGAAGAATACAGATGTCCCTAAGAAAAGGTGTCTGGTCACCAACACGGACAATGCATGGCCGTCCAGTCAACCATCACATCCAATTGGAGCAGATAATAATCATGGTAGAACGAGCTTGGAAGTGTTATCAGGGTGTGTTGCAACCACGTCAAGGGCTGGTGCCTCTATTAGTGGCAATGACCCTTTACAGCAAGGAAATGCTGATGCTGTTCCGTCATCAGAGGGTGGTGATATTGCAAAACCTGCTTTAAATGCTAATGGAGTATTTCCAGAAAGCACTAAAGTTAAAAGTCATCATGAAGAGTCTCTTGGGCCCTCCAAAATTGAAAAGGAAGAGGGGGAATTATCACCAATTGCTGACTTTGGGGAGGATAACTTTGTTGTCCCTGGAGATGCTGTGGTGCAAGCTAAGCCTAAGGCAAACCGCAGTATTGAAAGTAGACCGTTTCAGTCTGGGAATAGGGAAGACATTAGTGGTCGGGAAGCTGGAGACAATGATGCAGATGCAGATGATGAAAACAGCGAAAATGTTTCCGAGGCTGGTGAAGATGTCTCTGGCAGTGAGACAGCTGGTGATGAATGTTCCCGAGAAGAGCAAGGTGATGATGAAGATGCTGAACAAGATGACATTGATGGTAAGGCTGAGAGCGAAGGTGAGGCTGAAGGGATGGCTGATGGACATCTTGTCGGAGGAGATGGAATGTGTTCGCCGTTGTCCGAATGCTTTCTTTTATCTGTGAAACCTCTTGCGAAGCATGTACCAGGTTCTTTACTTGAAGAAAGGAAAGACTCTCGTGTTTTCTATGGGAATGATAATTTCTATGTGCTTTATAGGCTTCATCAAGTTCTATATGAAAGGATTTTATCTGCAAAAACAAGTTCCACAGGTGCAGAAATGAAATGGAGAACTTTGAAGGATGGCAGCTCTCCGGATCTGTATGACAGATTTATGAGTGCTCTATACAATTTGCTTGATGGATCTGTTGATAACGCAAAATTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCATATATATTATTCACCTTGGACAAATTAATATATAAATTCGTCAAACAGCTTCAAACTGTTGCAAGTGATGAGACTGACAATAAGCTGCTTCAATTATATGAATATGAAAAGTCCCGGAAAACTGGGAAGTTAATTGATTCTGTTTACCATGAAAACGCACGTGTCCTCATTCATGAGGAGAATATTTACAGATTGGAGTTTTCCTCTGCGCCCTCCCGACTGTCCATCCAGCTGATGGACAGTGTGAGTGAAAAGCCCGAGGTGTTTGCAGTTTCTATGGAACCGAATTTTGCATCCTATCTGCACAATGAATTTCTGCCGGTTTTTCCTGGAAAAAAGGAGCCGCATGGGATTACCCTTCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCTGCCTTTTGCAGGGCCATGGATGGTGTTCAGTTAGTCAATGGTTTGGAGTGCAAGATAGCTTGCAACTCATCCAAGATCTCTTACGTTCTTGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAACAGCAGAGGCCAGATCACCGTATTGTGATCAGAGGAGAGTACAGCGGTTCCACAAATTCTTATCAGTCTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

874

Amino Acids

97.7

Weight (kDa)

4.96

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3_corepress	PF08295	1 - 45	4.7e-12	Sin3 family co-repressor
Sin3a_C	PF16879	592 - 840	6.8e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10250
fragaria_vesca	FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790
malus_domestica	MD09G1041300.v1.1 MD17G1042600.v1.1
pyrus_communis	pycom111g03230 pycom17g03820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	1225
AccB1I	GGYRCC	1 cut(s)	1133
AccB7I	CCANNNNNTGG	1 cut(s)	2245
AccI	GTMKAC	2 cut(s)	720, 1414
AccIII	TCCGGA	1 cut(s)	1903
AciI	CCGC	4 cut(s)	244, 1399, 2354, 2590
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	2 cut(s)	1914, 1960
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	5 cut(s)	1970, 2045, 2296, 2321, 2600
AcuI	CTGAAG	2 cut(s)	1656, 2354
AcvI	CACGTG	1 cut(s)	2171
AfaI	GTAC	3 cut(s)	751, 1734, 2586
AfiI	CCNNNNNNNGG	4 cut(s)	674, 1125, 2245, 2421
AflII	CTTAAG	2 cut(s)	187, 812
AflIII	ACRYGT	1 cut(s)	2170
AhdI	GACNNNNNGTC	1 cut(s)	1658
AjiI	CACGTC	1 cut(s)	1122
AjnI	CCWGG	4 cut(s)	784, 1360, 1735, 2338
AjuI	GAANNNNNNNTTGG	2 cut(s)	1266, 1298
Alw21I	GWGCWC	2 cut(s)	86, 1933
Alw26I	GTCTC	9 cut(s)	637, 931, 963, 1284, 1458, 1531, 1532, 2075, 2617
AlwI	GGATC	2 cut(s)	1914, 1960
Ama87I	CYCGRG	2 cut(s)	1560, 2267
Aor13HI	TCCGGA	1 cut(s)	1903
AoxI	GGCC	4 cut(s)	1031, 1286, 2424, 2553
ApaI	GGGCCC	1 cut(s)	1290
ApeKI	GCWGC	4 cut(s)	503, 817, 1896, 2095
ApoI	RAATTY	5 cut(s)	1970, 2045, 2296, 2321, 2600
AseI	ATTAAT	1 cut(s)	2036
Asp700I	GAANNNNTTC	2 cut(s)	1678, 1698
AspLEI	GCGC	3 cut(s)	6, 2221, 2385
AspS9I	GGNCC	3 cut(s)	1286, 1287, 2424
AsuC2I	CCSGG	1 cut(s)	2125
AvaI	CYCGRG	2 cut(s)	1560, 2267
AxyI	CCTNAGG	1 cut(s)	1389
BaeGI	GKGCMC	1 cut(s)	1290
BanI	GGYRCC	1 cut(s)	1133
BanII	GRGCYC	2 cut(s)	86, 1290
BauI	CACGAG	1 cut(s)	1767
BbrPI	CACGTG	1 cut(s)	2171
BbsI	GAAGAC	3 cut(s)	171, 576, 1446
Bbv12I	GWGCWC	2 cut(s)	86, 1933
BbvI	GCAGC	4 cut(s)	490, 829, 1908, 2082
BceAI	ACGGC	2 cut(s)	1018, 1669
BcgI	CGANNNNNNTGC	2 cut(s)	2258, 2292
BciT130I	CCWGG	4 cut(s)	786, 1362, 1737, 2340
BclI	TGATCA	2 cut(s)	379, 2572
BcnI	CCSGG	1 cut(s)	2125
BcoDI	GTCTC	9 cut(s)	637, 931, 963, 1284, 1458, 1531, 1532, 2075, 2617
BfaI	CTAG	2 cut(s)	930, 962
BfmI	CTRYAG	1 cut(s)	522
BfrI	CTTAAG	2 cut(s)	187, 812
BfuAI	ACCTGC	1 cut(s)	1225
BglII	AGATCT	2 cut(s)	320, 2487
BisI	GCNGC	5 cut(s)	504, 818, 1897, 2096, 2354
BlpI	GCTNAGC	2 cut(s)	93, 1383
BlsI	GCNGC	5 cut(s)	505, 819, 1898, 2097, 2355
Bme1390I	CCNGG	5 cut(s)	786, 1362, 1737, 2125, 2340
BmeRI	GACNNNNNGTC	1 cut(s)	1658
BmeT110I	CYCGRG	2 cut(s)	1560, 2267
BmgBI	CACGTC	1 cut(s)	1122
BmgT120I	GGNCC	3 cut(s)	1286, 1287, 2424
BmiI	GGNNCC	6 cut(s)	666, 1135, 1288, 2292, 2352, 2594
BmrFI	CCNGG	5 cut(s)	786, 1362, 1737, 2125, 2340
BmrI	ACTGGG	1 cut(s)	2142
BmsI	GCATC	9 cut(s)	129, 764, 904, 1168, 1357, 1462, 1468, 1576, 2312
BmuI	ACTGGG	1 cut(s)	2142
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	3 cut(s)	171, 576, 1446
BplI	GAGNNNNNCTC	4 cut(s)	596, 628, 2198, 2230
BpmI	CTGGAG	2 cut(s)	1383, 1482
Bpu1102I	GCTNAGC	2 cut(s)	93, 1383
BpuEI	CTTGAG	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	2125
BsaAI	YACGTR	1 cut(s)	2171
BsaBI	GATNNNNATC	3 cut(s)	918, 1071, 1653
BsaI	GGTCTC	1 cut(s)	963
BsaJI	CCNNGG	6 cut(s)	217, 1360, 1509, 2025, 2268, 2427
BsaWI	WCCGGW	2 cut(s)	384, 1903
BsaXI	ACNNNNNCTCC	4 cut(s)	656, 686, 1356, 1386
Bsc4I	CCNNNNNNNGG	4 cut(s)	674, 1125, 2245, 2421
Bse118I	RCCGGY	1 cut(s)	2329
Bse1I	ACTGG	4 cut(s)	154, 1038, 2005, 2137
Bse21I	CCTNAGG	1 cut(s)	1389
Bse3DI	GCAATG	1 cut(s)	1156
Bse8I	GATNNNNATC	3 cut(s)	918, 1071, 1653
BseAI	TCCGGA	1 cut(s)	1903
BseBI	CCWGG	4 cut(s)	786, 1362, 1737, 2340
BseDI	CCNNGG	6 cut(s)	217, 1360, 1509, 2025, 2268, 2427
BseJI	GATNNNNATC	3 cut(s)	918, 1071, 1653
BseLI	CCNNNNNNNGG	4 cut(s)	674, 1125, 2245, 2421
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	4 cut(s)	435, 903, 939, 1608
BseNI	ACTGG	4 cut(s)	154, 1038, 2005, 2137
BseRI	GAGGAG	3 cut(s)	1680, 2201, 2593
BseSI	GKGCMC	1 cut(s)	1290
BseXI	GCAGC	4 cut(s)	490, 829, 1908, 2082
BsgI	GTGCAG	2 cut(s)	1884, 2297
BshFI	GGCC	4 cut(s)	1033, 1288, 2426, 2555
BshNI	GGYRCC	1 cut(s)	1133
BsiHKAI	GWGCWC	2 cut(s)	86, 1933
BsiHKCI	CYCGRG	2 cut(s)	1560, 2267
BsiSI	CCGG	4 cut(s)	385, 1904, 2125, 2330
BslFI	GGGAC	3 cut(s)	974, 1343, 2107
BslI	CCNNNNNNNGG	4 cut(s)	674, 1125, 2245, 2421
BsmAI	GTCTC	9 cut(s)	637, 931, 963, 1284, 1458, 1531, 1532, 2075, 2617
BsmFI	GGGAC	3 cut(s)	974, 1343, 2107
BsmI	GAATGC	2 cut(s)	1700, 1988
BsnI	GGCC	4 cut(s)	1033, 1288, 2426, 2555
Bso31I	GGTCTC	1 cut(s)	963
BsoBI	CYCGRG	2 cut(s)	1560, 2267
Bsp120I	GGGCCC	1 cut(s)	1286
Bsp1286I	GDGCHC	3 cut(s)	86, 1290, 1933
Bsp13I	TCCGGA	1 cut(s)	1903
Bsp143I	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
Bsp1720I	GCTNAGC	2 cut(s)	93, 1383
Bsp19I	CCATGG	2 cut(s)	217, 2427
BspACI	CCGC	4 cut(s)	244, 1399, 2354, 2590
BspANI	GGCC	4 cut(s)	1033, 1288, 2426, 2555
BspCNI	CTCAG	4 cut(s)	436, 902, 940, 1609
BspEI	TCCGGA	1 cut(s)	1903
BspHI	TCATGA	2 cut(s)	1270, 2182
BspLI	GGNNCC	6 cut(s)	666, 1135, 1288, 2292, 2352, 2594
BspMI	ACCTGC	1 cut(s)	1225
BspPI	GGATC	2 cut(s)	1914, 1960
BspQI	GCTCTTC	1 cut(s)	1560
BspT107I	GGYRCC	1 cut(s)	1133
BspTI	CTTAAG	2 cut(s)	187, 812
BspTNI	GGTCTC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	1156
BsrFI	RCCGGY	1 cut(s)	2329
BsrI	ACTGG	4 cut(s)	154, 1038, 2005, 2137
BssAI	RCCGGY	1 cut(s)	2329
BssECI	CCNNGG	6 cut(s)	217, 1360, 1509, 2025, 2268, 2427
BssMI	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
BssSI	CACGAG	1 cut(s)	1767
BssT1I	CCWWGG	3 cut(s)	217, 2025, 2427
Bst2BI	CACGAG	1 cut(s)	1767
Bst2UI	CCWGG	4 cut(s)	786, 1362, 1737, 2340
Bst4CI	ACNGT	6 cut(s)	805, 1419, 2068, 2232, 2252, 2565
Bst6I	CTCTTC	4 cut(s)	597, 1269, 1302, 1560
BstAFI	CTTAAG	2 cut(s)	187, 812
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstBAI	YACGTR	1 cut(s)	2171
BstC8I	GCNNGC	3 cut(s)	99, 1380, 2473
BstDSI	CCRYGG	2 cut(s)	217, 2427
BstEII	GGTNACC	2 cut(s)	212, 1009
BstENI	CCTNNNNNAGG	1 cut(s)	2419
BstHHI	GCGC	3 cut(s)	6, 2221, 2385
BstKTI	GATC	9 cut(s)	138, 323, 382, 450, 1909, 1955, 2490, 2561, 2575
BstMAI	GTCTC	9 cut(s)	637, 931, 963, 1284, 1458, 1531, 1532, 2075, 2617
BstMBI	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 503, 1217, 1226, 1384, 1807
BstNI	CCWGG	4 cut(s)	786, 1362, 1737, 2340
BstNSI	RCATGY	1 cut(s)	1733
BstPAI	GACNNNNGTC	1 cut(s)	219
BstPI	GGTNACC	2 cut(s)	212, 1009
BstSCI	CCNGG	5 cut(s)	784, 1360, 1735, 2123, 2338
BstSFI	CTRYAG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	1290
BstV1I	GCAGC	4 cut(s)	490, 829, 1908, 2082
BstV2I	GAAGAC	3 cut(s)	171, 576, 1446
BstX2I	RGATCY	4 cut(s)	320, 1906, 1952, 2487
BstYI	RGATCY	4 cut(s)	320, 1906, 1952, 2487
Bsu36I	CCTNAGG	1 cut(s)	1389
BsuRI	GGCC	4 cut(s)	1033, 1288, 2426, 2555
BtgI	CCRYGG	2 cut(s)	217, 2427
BtgZI	GCGATG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	1122
BtsI	GCAGTG	2 cut(s)	174, 1540
BtsIMutI	CAGTG	3 cut(s)	174, 1540, 2257
BveI	ACCTGC	1 cut(s)	1225
Cac8I	GCNNGC	3 cut(s)	99, 1380, 2473
CciI	TCATGA	2 cut(s)	1270, 2182
CfoI	GCGC	3 cut(s)	6, 2221, 2385
Cfr10I	RCCGGY	1 cut(s)	2329
Cfr13I	GGNCC	3 cut(s)	1286, 1287, 2424
CsiI	ACCWGGT	1 cut(s)	1735
Csp6I	GTAC	3 cut(s)	750, 1733, 2585
CviQI	GTAC	3 cut(s)	750, 1733, 2585
DpnI	GATC	9 cut(s)	137, 322, 381, 449, 1908, 1954, 2489, 2560, 2574
DpnII	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
DraI	TTTAAA	2 cut(s)	183, 1224
DriI	GACNNNNNGTC	1 cut(s)	1658
EaeI	YGGCCR	1 cut(s)	1031
Eam1104I	CTCTTC	4 cut(s)	597, 1269, 1302, 1560
Eam1105I	GACNNNNNGTC	1 cut(s)	1658
EarI	CTCTTC	4 cut(s)	597, 1269, 1302, 1560
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	217, 2025, 2427
Eco24I	GRGCYC	2 cut(s)	86, 1290
Eco31I	GGTCTC	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	1656, 2354
Eco72I	CACGTG	1 cut(s)	2171
Eco81I	CCTNAGG	1 cut(s)	1389
Eco88I	CYCGRG	2 cut(s)	1560, 2267
Eco91I	GGTNACC	2 cut(s)	212, 1009
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	2419
EcoO109I	RGGNCCY	1 cut(s)	1287
EcoO65I	GGTNACC	2 cut(s)	212, 1009
EcoRII	CCWGG	4 cut(s)	784, 1360, 1735, 2338
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	3 cut(s)	217, 2025, 2427
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	2 cut(s)	86, 1290
ErhI	CCWWGG	3 cut(s)	217, 2025, 2427
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	3 cut(s)	974, 1343, 2107
FauNDI	CATATG	1 cut(s)	534
FbaI	TGATCA	2 cut(s)	379, 2572
FblI	GTMKAC	2 cut(s)	720, 1414
Fnu4HI	GCNGC	5 cut(s)	504, 818, 1897, 2096, 2354
FriOI	GRGCYC	2 cut(s)	86, 1290
Fsp4HI	GCNGC	5 cut(s)	504, 818, 1897, 2096, 2354
FspBI	CTAG	2 cut(s)	930, 962
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 2220, 2384
GluI	GCNGC	5 cut(s)	504, 818, 1897, 2096, 2354
GsuI	CTGGAG	2 cut(s)	1383, 1482
HaeIII	GGCC	4 cut(s)	1033, 1288, 2426, 2555
HapII	CCGG	4 cut(s)	385, 1904, 2125, 2330
HhaI	GCGC	3 cut(s)	6, 2221, 2385
Hin6I	GCGC	3 cut(s)	4, 2219, 2383
HinP1I	GCGC	3 cut(s)	4, 2219, 2383
HincII	GTYRAC	2 cut(s)	721, 1043
HindII	GTYRAC	2 cut(s)	721, 1043
HpaII	CCGG	4 cut(s)	385, 1904, 2125, 2330
Hpy166II	GTNNAC	4 cut(s)	721, 1043, 1415, 2155
Hpy8I	GTNNAC	4 cut(s)	721, 1043, 1415, 2155
HpyAV	CCTTC	8 cut(s)	500, 836, 928, 1619, 1631, 1882, 2378, 2526
HpyCH4III	ACNGT	6 cut(s)	805, 1419, 2068, 2232, 2252, 2565
HpyCH4IV	ACGT	4 cut(s)	202, 1121, 2170, 2496
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 503, 1217, 1226, 1384, 1807
HpySE526I	ACGT	4 cut(s)	202, 1121, 2170, 2496
HspAI	GCGC	3 cut(s)	4, 2219, 2383
Kpn2I	TCCGGA	1 cut(s)	1903
Ksp22I	TGATCA	2 cut(s)	379, 2572
Kzo9I	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
LguI	GCTCTTC	1 cut(s)	1560
LmnI	GCTCC	4 cut(s)	387, 664, 1061, 2350
Lsp1109I	GCAGC	4 cut(s)	490, 829, 1908, 2082
LweI	GCATC	9 cut(s)	129, 764, 904, 1168, 1357, 1462, 1468, 1576, 2312
MabI	ACCWGGT	1 cut(s)	1735
MaeI	CTAG	2 cut(s)	930, 962
MaeII	ACGT	4 cut(s)	202, 1121, 2170, 2496
MaeIII	GTNAC	2 cut(s)	212, 1009
MalI	GATC	9 cut(s)	137, 322, 381, 449, 1908, 1954, 2489, 2560, 2574
MboI	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
MfeI	CAATTG	2 cut(s)	1056, 1326
MflI	RGATCY	4 cut(s)	320, 1906, 1952, 2487
MhlI	GDGCHC	3 cut(s)	86, 1290, 1933
MlyI	GAGTC	3 cut(s)	83, 1286, 1757
MmeI	TCCRAC	3 cut(s)	39, 278, 1642
Mph1103I	ATGCAT	1 cut(s)	1030
MroI	TCCGGA	1 cut(s)	1903
MroXI	GAANNNNTTC	2 cut(s)	1678, 1698
MspA1I	CMGCKG	3 cut(s)	1544, 2242, 2590
MspCI	CTTAAG	2 cut(s)	187, 812
MspI	CCGG	4 cut(s)	385, 1904, 2125, 2330
MspR9I	CCNGG	5 cut(s)	786, 1362, 1737, 2125, 2340
MunI	CAATTG	2 cut(s)	1056, 1326
Mva1269I	GAATGC	2 cut(s)	1700, 1988
MvaI	CCWGG	4 cut(s)	786, 1362, 1737, 2340
MwoI	GCNNNNNNNGC	6 cut(s)	98, 503, 1217, 1226, 1384, 1807
NciI	CCSGG	1 cut(s)	2125
NcoI	CCATGG	2 cut(s)	217, 2427
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
NlaIV	GGNNCC	6 cut(s)	666, 1135, 1288, 2292, 2352, 2594
NmeAIII	GCCGAG	1 cut(s)	2012
NmuCI	GTSAC	2 cut(s)	212, 1009
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	1733
PagI	TCATGA	2 cut(s)	1270, 2182
PciSI	GCTCTTC	1 cut(s)	1560
PctI	GAATGC	2 cut(s)	1700, 1988
PdmI	GAANNNNTTC	2 cut(s)	1678, 1698
PfeI	GAWTC	8 cut(s)	153, 410, 698, 733, 794, 938, 2147, 2405
PflMI	CCANNNNNTGG	1 cut(s)	2245
PfoI	TCCNGGA	2 cut(s)	2123, 2338
PkrI	GCNGC	5 cut(s)	505, 819, 1898, 2097, 2355
PleI	GAGTC	3 cut(s)	82, 1285, 1757
PmaCI	CACGTG	1 cut(s)	2171
PmlI	CACGTG	1 cut(s)	2171
PpsI	GAGTC	3 cut(s)	82, 1285, 1757
Ppu21I	YACGTR	1 cut(s)	2171
PshAI	GACNNNNGTC	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	2036
Psp124BI	GAGCTC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	4 cut(s)	784, 1360, 1735, 2338
PspCI	CACGTG	1 cut(s)	2171
PspEI	GGTNACC	2 cut(s)	212, 1009
PspGI	CCWGG	4 cut(s)	784, 1360, 1735, 2338
PspN4I	GGNNCC	6 cut(s)	666, 1135, 1288, 2292, 2352, 2594
PspOMI	GGGCCC	1 cut(s)	1286
PspPI	GGNCC	3 cut(s)	1286, 1287, 2424
PsuI	RGATCY	4 cut(s)	320, 1906, 1952, 2487
PvuII	CAGCTG	2 cut(s)	1544, 2242
RsaI	GTAC	3 cut(s)	751, 1734, 2586
RsaNI	GTAC	3 cut(s)	750, 1733, 2585
SacI	GAGCTC	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	719
SapI	GCTCTTC	1 cut(s)	1560
SatI	GCNGC	5 cut(s)	504, 818, 1897, 2096, 2354
Sau3AI	GATC	9 cut(s)	135, 320, 379, 447, 1906, 1952, 2487, 2558, 2572
Sau96I	GGNCC	3 cut(s)	1286, 1287, 2424
SchI	GAGTC	3 cut(s)	83, 1286, 1757
ScrFI	CCNGG	5 cut(s)	786, 1362, 1737, 2125, 2340
SduI	GDGCHC	3 cut(s)	86, 1290, 1933
SexAI	ACCWGGT	1 cut(s)	1735
SfaNI	GCATC	9 cut(s)	129, 764, 904, 1168, 1357, 1462, 1468, 1576, 2312
SfcI	CTRYAG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	187, 421, 812
SmoI	CTYRAG	3 cut(s)	187, 421, 812
SsiI	CCGC	4 cut(s)	244, 1399, 2354, 2590
SspI	AATATT	2 cut(s)	593, 2194
SspMI	CTAG	2 cut(s)	930, 962
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	5 cut(s)	784, 1360, 1735, 2123, 2338
StyI	CCWWGG	3 cut(s)	217, 2025, 2427
TaaI	ACNGT	6 cut(s)	805, 1419, 2068, 2232, 2252, 2565
TaiI	ACGT	4 cut(s)	205, 1124, 2173, 2499
TaqI	TCGA	3 cut(s)	688, 720, 758
TatI	WGTACW	2 cut(s)	749, 2584
TauI	GCSGC	1 cut(s)	2356
TfiI	GAWTC	8 cut(s)	153, 410, 698, 733, 794, 938, 2147, 2405
TscAI	CASTG	3 cut(s)	181, 1540, 2257
TseFI	GTSAC	2 cut(s)	212, 1009
TseI	GCWGC	4 cut(s)	503, 817, 1896, 2095
Tsp45I	GTSAC	2 cut(s)	212, 1009
TspGWI	ACGGA	3 cut(s)	1034, 1176, 2513
TspRI	CASTG	3 cut(s)	181, 1540, 2257
Van91I	CCANNNNNTGG	1 cut(s)	2245
Vha464I	CTTAAG	2 cut(s)	187, 812
VspI	ATTAAT	1 cut(s)	2036
XagI	CCTNNNNNAGG	1 cut(s)	2419
XapI	RAATTY	5 cut(s)	1970, 2045, 2296, 2321, 2600
XceI	RCATGY	1 cut(s)	1733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2242
XmiI	GTMKAC	2 cut(s)	720, 1414
XmnI	GAANNNNTTC	2 cut(s)	1678, 1698
XspI	CTAG	2 cut(s)	930, 962
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.