Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0019832

Physical Location & Seq

Genomic Coordinates Forward (+)

3846250 .. 3847237

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCCATCCGAAACAAGAAAACAAAGCCCCTTAGCTCCTCTGGTTCTGTTGAGCCCCTCACCCTCTGTCATCCGCCACCTTGGCGCCAAAATCACTGCAAAAATAAAAAAAAAGAGCGCCTGCAAAACCCTAGTCCGTACATCTCTCTCCTTAATCACCTCCACCCTCCGAACCAATCGACCCACCGTCTCTGTCCTCCACTCCTCCACTCCCCCTCCCTCCGTTTCTCTCTGCTTCCTCCCAACCAAGATTCCTGGTCCTCCTCCTCCTAAAGGATCAACTATAGAACAACAGAAAGATATTGGCCTTCTTGCTGTGAAGCTGCCTTCAGCAGATGCTATCGTTGTACGTACAACACTTGGGTTTCTGACTGAAATCCGCCGCGGGCTTCCGGGGAGGAATGAAGCCGGCTCATTTTGGGGTGAGATAGGAACCAGATTCTCCTTTGGGACGTGGCTTCTTTTGAAGTTTCCCCCATTTTTTCACCGCGGGCTTCGTTTTAAGATGTGGTTTGCCGGACATGGTTACAGCGACAGCAGTCTTGTTTCGCCGGGAAACAGAAAACCCGACATGGAAATAATAACCAGAGTTATGCGGCCTGAGATTGGCCATTTGACCACACCGATCATTTTACTGCAGTGTGCTCTGATTGTTCTAAGCCAATATGACAACCTTCCAAAGGGAGGAGTTTGCCCAGCTAGGATTGTCTTTGGCCCAACTGGTCTCCAAGAAAGGCTCAAAGAGAACGAGATTTCTTTCGATGTCATTTTAAAGAAAGCTATTTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

264

Amino Acids

28.72

Weight (kDa)

10.35

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019832)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g05430
rosa_chinensis	RchiOBHm_Chr4g0415101
rosa_laevigata	RLG00000021663 RLG00000021666
rosa_multiflora	Rmu_sc0021992.1_g000008
rosa_samantha	Rh2DG614100 Rh4CG202800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	2 cut(s)	384, 489
AciI	CCGC	7 cut(s)	73, 379, 382, 384, 487, 489, 595
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	139, 348, 352
AfiI	CCNNNNNNNGG	4 cut(s)	272, 605, 679, 683
AgsI	TTSAA	1 cut(s)	466
AhdI	GACNNNNNGTC	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	35, 322, 698, 779
AluI	AGCT	4 cut(s)	35, 322, 698, 779
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	2 cut(s)	193, 728
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	4 cut(s)	304, 596, 607, 712
ApeKI	GCWGC	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	2 cut(s)	86, 119
AspS9I	GGNCC	2 cut(s)	257, 713
AsuC2I	CCSGG	2 cut(s)	393, 552
AsuHPI	GGTGA	4 cut(s)	51, 148, 434, 476
AvaII	GGWCC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	393, 552
BcoDI	GTCTC	2 cut(s)	193, 728
BfaI	CTAG	2 cut(s)	131, 699
BfmI	CTRYAG	2 cut(s)	282, 635
BfoI	RGCGCY	2 cut(s)	87, 120
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	323, 382, 596
BlsI	GCNGC	3 cut(s)	324, 383, 597
Bme1390I	CCNGG	3 cut(s)	255, 393, 552
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	257, 713
BmiI	GGNNCC	2 cut(s)	85, 433
BmrFI	CCNGG	3 cut(s)	255, 393, 552
BmsI	GCATC	1 cut(s)	325
BoxI	GACNNNNGTC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	393, 552
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	4 cut(s)	79, 382, 392, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 605, 679, 683
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	79, 382, 392, 487
BseGI	GGATG	2 cut(s)	5, 69
BseLI	CCNNNNNNNGG	4 cut(s)	272, 605, 679, 683
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	5 cut(s)	27, 193, 252, 255, 699
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	2 cut(s)	384, 489
BshFI	GGCC	4 cut(s)	306, 598, 609, 714
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	4 cut(s)	392, 408, 516, 551
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	272, 605, 679, 683
BsmAI	GTCTC	2 cut(s)	193, 728
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	306, 598, 609, 714
Bso31I	GGTCTC	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	56, 646
Bsp143I	GATC	2 cut(s)	275, 624
BspACI	CCGC	7 cut(s)	73, 379, 382, 384, 487, 489, 595
BspANI	GGCC	4 cut(s)	306, 598, 609, 714
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	2 cut(s)	384, 489
BspLI	GGNNCC	2 cut(s)	85, 433
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	79, 382, 392, 487
BssMI	GATC	2 cut(s)	275, 624
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	4 cut(s)	121, 386, 409, 491
BstDEI	CTNAG	3 cut(s)	31, 600, 656
BstDSI	CCRYGG	2 cut(s)	382, 487
BstENI	CCTNNNNNAGG	2 cut(s)	270, 677
BstF5I	GGATG	2 cut(s)	5, 69
BstFNI	CGCG	2 cut(s)	384, 489
BstH2I	RGCGCY	2 cut(s)	87, 120
BstHHI	GCGC	2 cut(s)	86, 119
BstKTI	GATC	2 cut(s)	278, 627
BstMAI	GTCTC	2 cut(s)	193, 728
BstMBI	GATC	2 cut(s)	275, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	253, 391, 550
BstSFI	CTRYAG	2 cut(s)	282, 635
BstSNI	TACGTA	1 cut(s)	350
BstUI	CGCG	2 cut(s)	384, 489
BstV1I	GCAGC	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	306, 598, 609, 714
BtgI	CCRYGG	2 cut(s)	382, 487
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	5, 69
BtsI	GCAGTG	2 cut(s)	93, 644
BtsIMutI	CAGTG	2 cut(s)	93, 644
Cac8I	GCNNGC	4 cut(s)	121, 386, 409, 491
CfoI	GCGC	2 cut(s)	86, 119
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	257, 713
Cfr42I	CCGCGG	2 cut(s)	385, 490
Csp6I	GTAC	3 cut(s)	138, 347, 351
CviAII	CATG	2 cut(s)	521, 571
CviQI	GTAC	3 cut(s)	138, 347, 351
DdeI	CTNAG	3 cut(s)	31, 600, 656
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	2 cut(s)	277, 626
DpnII	GATC	2 cut(s)	275, 624
DraI	TTTAAA	1 cut(s)	771
DriI	GACNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	607
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	2 cut(s)	62, 368
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	2 cut(s)	270, 677
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	56
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	524, 574
FaiI	YATR	5 cut(s)	284, 522, 572, 593, 666
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	2 cut(s)	520, 570
FauI	CCCGC	2 cut(s)	377, 482
Fnu4HI	GCNGC	3 cut(s)	323, 382, 596
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	323, 382, 596
FspBI	CTAG	2 cut(s)	131, 699
GlaI	GCGC	2 cut(s)	85, 118
GluI	GCNGC	3 cut(s)	323, 382, 596
GsaI	CCCAGC	1 cut(s)	698
HaeII	RGCGCY	2 cut(s)	87, 120
HaeIII	GGCC	4 cut(s)	306, 598, 609, 714
HapII	CCGG	4 cut(s)	392, 408, 516, 551
HhaI	GCGC	2 cut(s)	86, 119
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	524, 574
Hin6I	GCGC	2 cut(s)	84, 117
HinP1I	GCGC	2 cut(s)	84, 117
HinfI	GANTC	2 cut(s)	250, 438
HpaII	CCGG	4 cut(s)	392, 408, 516, 551
HphI	GGTGA	4 cut(s)	51, 148, 434, 476
Hpy188I	TCNGA	4 cut(s)	10, 170, 369, 648
HpyAV	CCTTC	3 cut(s)	317, 336, 683
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	349, 452
HpyCH4V	TGCA	3 cut(s)	98, 123, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	31, 600, 656
HpySE526I	ACGT	2 cut(s)	349, 452
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	524, 574
HspAI	GCGC	2 cut(s)	84, 117
KasI	GGCGCC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
KspI	CCGCGG	2 cut(s)	385, 490
Kzo9I	GATC	2 cut(s)	275, 624
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	131, 699
MaeII	ACGT	2 cut(s)	349, 452
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	2 cut(s)	277, 626
MboI	GATC	2 cut(s)	275, 624
MhlI	GDGCHC	2 cut(s)	56, 646
MlsI	TGGCCA	1 cut(s)	609
MluNI	TGGCCA	1 cut(s)	609
Mly113I	GGCGCC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	609
MroNI	GCCGGC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	4 cut(s)	152, 501, 770, 790
Msp20I	TGGCCA	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	384, 489
MspI	CCGG	4 cut(s)	392, 408, 516, 551
MspR9I	CCNGG	3 cut(s)	255, 393, 552
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	384, 489
MwoI	GCNNNNNNNGC	1 cut(s)	81
NaeI	GCCGGC	1 cut(s)	409
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	2 cut(s)	393, 552
NdeII	GATC	2 cut(s)	275, 624
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	2 cut(s)	524, 574
NlaIV	GGNNCC	2 cut(s)	85, 433
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	250, 438
PkrI	GCNGC	3 cut(s)	324, 383, 597
PluTI	GGCGCC	1 cut(s)	87
Ppu21I	YACGTR	1 cut(s)	350
PshAI	GACNNNNGTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	85, 433
PspPI	GGNCC	2 cut(s)	257, 713
PstI	CTGCAG	1 cut(s)	639
RsaI	GTAC	3 cut(s)	139, 348, 352
RsaNI	GTAC	3 cut(s)	138, 347, 351
SacII	CCGCGG	2 cut(s)	385, 490
SaqAI	TTAA	4 cut(s)	152, 501, 770, 790
SatI	GCNGC	3 cut(s)	323, 382, 596
Sau3AI	GATC	2 cut(s)	275, 624
Sau96I	GGNCC	2 cut(s)	257, 713
ScrFI	CCNGG	3 cut(s)	255, 393, 552
SduI	GDGCHC	2 cut(s)	56, 646
SetI	ASST	9 cut(s)	37, 81, 161, 324, 352, 455, 675, 700, 781
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	2 cut(s)	282, 635
SfoI	GGCGCC	1 cut(s)	85
Sfr303I	CCGCGG	2 cut(s)	385, 490
SgrBI	CCGCGG	2 cut(s)	385, 490
SinI	GGWCC	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	350
SsiI	CCGC	7 cut(s)	73, 379, 382, 384, 487, 489, 595
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	131, 699
StyD4I	CCNGG	3 cut(s)	253, 391, 550
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	352, 455
TaqI	TCGA	2 cut(s)	178, 759
TauI	GCSGC	2 cut(s)	384, 598
TfiI	GAWTC	2 cut(s)	250, 438
Tru1I	TTAA	4 cut(s)	152, 501, 770, 790
Tru9I	TTAA	4 cut(s)	152, 501, 770, 790
TscAI	CASTG	2 cut(s)	100, 644
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	2 cut(s)	125, 211
TspRI	CASTG	2 cut(s)	100, 644
VpaK11BI	GGWCC	1 cut(s)	257
XagI	CCTNNNNNAGG	2 cut(s)	270, 677
XspI	CTAG	2 cut(s)	131, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.