Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021992.1

Orthogroup ID

OG0019832

Physical Location & Seq

Genomic Coordinates Reverse (-)

25323 .. 26066

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021992.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgggcaggggagttcaatgggttaatctttatttacttttctgtttgcagattcctggtcctcctccttctaaaggaccaaccattgaacaccagaaaaagattggcctttgggctgtgaagctaccttcagcagatactatcgctgtacgaagaacacttggagctctgactgaaaatcccggtggtcttccagggaggaatgagagtgatgaacacattaaaaaaagagaagccttctggtcaacagtgaagccagctcatttcggggtgaagataggcaccaagtctctgttgggaatttttcggatgatgataattggaatctttcttgggctcttgggtcagttttcctttgggaggtggcttctcttaaagtatccctcatttttcagtgttggatggttcaggaagcagggtccctccgatgaggaggtgagaagtgcatcttttaagatgtggtttgttggatgtggtttcagcgacaggagtcttgcttctcagggaaacacaaaacctgatatggaaatagtaacaagagttatgggacctgaagttggctacataacaaccccgataattctacttcagtgtgcacttactgttctgagccaacgcgacaatcttccaaagggaggagttctcccacctgggattgtatttggcccaactgatctccaagaaaagctacaagaaaatggagttacttttgatgttatttcaaagaatgttatttctcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

247

Amino Acids

27.25

Weight (kDa)

9.61

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019832)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g05430
rosa_chinensis	RchiOBHm_Chr4g0415101
rosa_laevigata	RLG00000021663 RLG00000021666
rosa_multiflora	Rmu_sc0021992.1_g000008
rosa_samantha	Rh2DG614100 Rh4CG202800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	3 cut(s)	114, 572, 573
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	4 cut(s)	74, 360, 557, 635
AgsI	TTSAA	3 cut(s)	17, 89, 723
AjnI	CCWGG	3 cut(s)	55, 193, 649
AluBI	AGCT	4 cut(s)	124, 167, 260, 688
AluI	AGCT	4 cut(s)	124, 167, 260, 688
Alw21I	GWGCWC	2 cut(s)	169, 598
Alw26I	GTCTC	1 cut(s)	294
Alw44I	GTGCAC	1 cut(s)	594
AoxI	GGCC	2 cut(s)	106, 664
ApaLI	GTGCAC	1 cut(s)	594
ApoI	RAATTY	1 cut(s)	300
AspS9I	GGNCC	5 cut(s)	59, 77, 419, 548, 665
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	283, 448
AvaII	GGWCC	4 cut(s)	59, 77, 419, 548
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	169, 339
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	169, 598
BccI	CCATC	1 cut(s)	396
BciT130I	CCWGG	3 cut(s)	57, 195, 651
BciVI	GTATCC	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	390
Bme1390I	CCNGG	4 cut(s)	57, 183, 195, 651
Bme18I	GGWCC	4 cut(s)	59, 77, 419, 548
BmgT120I	GGNCC	5 cut(s)	59, 77, 419, 548, 665
BmiI	GGNNCC	4 cut(s)	283, 420, 421, 549
BmrFI	CCNGG	4 cut(s)	57, 183, 195, 651
BmsI	GCATC	1 cut(s)	455
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	627, 659
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	194, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 360, 557, 635
BseBI	CCWGG	3 cut(s)	57, 195, 651
BseDI	CCNNGG	2 cut(s)	194, 650
BseGI	GGATG	3 cut(s)	315, 407, 476
BseLI	CCNNNNNNNGG	4 cut(s)	74, 360, 557, 635
BseMII	CTCAG	2 cut(s)	515, 599
BseRI	GAGGAG	3 cut(s)	54, 446, 651
BseSI	GKGCMC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	108, 666
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	169, 598
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	405, 561
BslI	CCNNNNNNNGG	4 cut(s)	74, 360, 557, 635
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	405, 561
BsnI	GGCC	2 cut(s)	108, 666
Bsp1286I	GDGCHC	3 cut(s)	169, 339, 598
Bsp143I	GATC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	108, 666
BspCNI	CTCAG	2 cut(s)	514, 600
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	283, 420, 421, 549
BspT107I	GGYRCC	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	194, 650
BssMI	GATC	1 cut(s)	673
Bst2UI	CCWGG	3 cut(s)	57, 195, 651
Bst4CI	ACNGT	2 cut(s)	250, 604
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	501, 608
BstENI	CCTNNNNNAGG	2 cut(s)	72, 358
BstF5I	GGATG	3 cut(s)	315, 407, 476
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	1 cut(s)	676
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	673
BstNI	CCWGG	3 cut(s)	57, 195, 651
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSCI	CCNGG	4 cut(s)	55, 181, 193, 649
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	618
BstV2I	GAAGAC	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	108, 666
BtsCI	GGATG	3 cut(s)	315, 407, 476
BtsIMutI	CAGTG	3 cut(s)	255, 400, 596
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	5 cut(s)	59, 77, 419, 548, 665
Csp6I	GTAC	1 cut(s)	149
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	501, 608
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	169, 339
Eco47I	GGWCC	4 cut(s)	59, 77, 419, 548
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	3 cut(s)	114, 572, 573
EcoICRI	GAGCTC	1 cut(s)	167
EcoNI	CCTNNNNNAGG	2 cut(s)	72, 358
EcoO109I	RGGNCCY	2 cut(s)	419, 548
EcoRII	CCWGG	3 cut(s)	55, 193, 649
EcoT38I	GRGCYC	2 cut(s)	169, 339
FaiI	YATR	3 cut(s)	524, 545, 566
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	2 cut(s)	405, 561
FokI	GGATG	3 cut(s)	322, 414, 483
FriOI	GRGCYC	2 cut(s)	169, 339
HaeIII	GGCC	2 cut(s)	108, 666
HapII	CCGG	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	52, 324, 490
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	283, 448
Hpy166II	GTNNAC	2 cut(s)	246, 596
Hpy188I	TCNGA	4 cut(s)	171, 309, 427, 609
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	246, 596
HpyAV	CCTTC	3 cut(s)	78, 138, 247
HpyCH4III	ACNGT	2 cut(s)	250, 604
HpyCH4V	TGCA	3 cut(s)	49, 446, 596
HpyF3I	CTNAG	2 cut(s)	501, 608
KflI	GGGWCCC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	1 cut(s)	164
LweI	GCATC	1 cut(s)	455
MaeIII	GTNAC	2 cut(s)	532, 703
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	4 cut(s)	165, 182, 286, 617
MhlI	GDGCHC	3 cut(s)	169, 339, 598
MluCI	AATT	3 cut(s)	300, 318, 579
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	379, 448
MnlI	CCTC	9 cut(s)	72, 75, 192, 354, 394, 424, 427, 433, 629
MseI	TTAA	5 cut(s)	24, 222, 374, 453, 742
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	4 cut(s)	57, 183, 195, 651
MvaI	CCWGG	3 cut(s)	57, 195, 651
MvnI	CGCG	1 cut(s)	618
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	673
NlaIV	GGNNCC	4 cut(s)	283, 420, 421, 549
PfeI	GAWTC	2 cut(s)	52, 324
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PpuMI	RGGWCCY	2 cut(s)	419, 548
PshAI	GACNNNNGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	169
Psp5II	RGGWCCY	2 cut(s)	419, 548
Psp6I	CCWGG	3 cut(s)	55, 193, 649
PspGI	CCWGG	3 cut(s)	55, 193, 649
PspN4I	GGNNCC	4 cut(s)	283, 420, 421, 549
PspPI	GGNCC	5 cut(s)	59, 77, 419, 548, 665
PspPPI	RGGWCCY	2 cut(s)	419, 548
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	5 cut(s)	24, 222, 374, 453, 742
Sau3AI	GATC	1 cut(s)	673
Sau96I	GGNCC	5 cut(s)	59, 77, 419, 548, 665
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	4 cut(s)	57, 183, 195, 651
SduI	GDGCHC	3 cut(s)	169, 339, 598
SfaNI	GCATC	1 cut(s)	455
SinI	GGWCC	4 cut(s)	59, 77, 419, 548
Sse9I	AATT	3 cut(s)	300, 318, 579
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	4 cut(s)	55, 181, 193, 649
TaaI	ACNGT	2 cut(s)	250, 604
TasI	AATT	3 cut(s)	300, 318, 579
TfiI	GAWTC	2 cut(s)	52, 324
Tru1I	TTAA	5 cut(s)	24, 222, 374, 453, 742
Tru9I	TTAA	5 cut(s)	24, 222, 374, 453, 742
TscAI	CASTG	3 cut(s)	255, 400, 596
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	255, 400, 596
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	4 cut(s)	59, 77, 419, 548
XagI	CCTNNNNNAGG	2 cut(s)	72, 358
XapI	RAATTY	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	2 cut(s)	101, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.