Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019832

Physical Location & Seq

Genomic Coordinates Reverse (-)

77098927 .. 77101359

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATTCCTGCTTCTCCTCCTTCCAAAGGACCGACTATTGAACACCAGAAAAAGATTGGCCTTTGGGCTGTGAAGCTACCTTCAGCAGATGCTACCGTTGTACGAAGAACACTTGGAGCTCTGACCGAAAATCCCGGCGGTCTTCCAGGGAGGAATGAGAGTGATGAACACATTAAAAAAAGAGAAGCCTTCTGGTCAACAGTGAAGCCAGCTCATTTCGGGGTGAAGATAGGCACCAAGTCTCTGTTGGGCATTTTTCGGATCATGACAGTTGGAATCTTTATTGGGCTCTTGGGTCAGTTTTCCTTTGGGAGGTGGCTTCTCTTAAAGTATCCCCCATTTTTCAGTGTTGGATGGTTCAGGAAGCAGGGTCCCTCCGATGAGGAGGTGAGAAGTGCTTCTTTTAAGATGTGGTTTGTTGGACGTGGTTTCAGCGACAGGAGTCTTGCTTCTCTGGGAAACACAAAACCTGATACGGAAATAGTAACAAGAGTTATGGGACCTGAAATTGGCTACATAACAACCCCGATAATTCTACTTCAGTGTGCACTTATTGTTCTGAGCCAACGCGACAATCTTCCAAAGGGAGGAGTTTTCCCAGCTGGGATTGTATTTGGCCCAACTGATCTCCTAGAAAGGCTACAAGAAAATGGAGTTACTTTTGATGTTATTTCAAAGAATGCTATTTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

232

Amino Acids

25.35

Weight (kDa)

9.85

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019832)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g05430
rosa_chinensis	RchiOBHm_Chr4g0415101
rosa_laevigata	RLG00000021663 RLG00000021666
rosa_multiflora	Rmu_sc0021992.1_g000008
rosa_samantha	Rh2DG614100 Rh4CG202800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	66, 524
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	4 cut(s)	26, 312, 509, 587
AgsI	TTSAA	2 cut(s)	41, 675
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	76, 119, 212, 602
AluI	AGCT	4 cut(s)	76, 119, 212, 602
Alw21I	GWGCWC	2 cut(s)	121, 550
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	58, 616
ApaLI	GTGCAC	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	29, 371, 500, 617
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	235, 400
AvaII	GGWCC	3 cut(s)	29, 371, 500
BaeGI	GKGCMC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	121, 291
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	121, 550
BccI	CCATC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	135, 147
Bme18I	GGWCC	3 cut(s)	29, 371, 500
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	4 cut(s)	29, 371, 500, 617
BmiI	GGNNCC	4 cut(s)	235, 372, 373, 501
BmrFI	CCNGG	2 cut(s)	135, 147
BmsI	GCATC	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 312, 509, 587
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	4 cut(s)	26, 312, 509, 587
BseMII	CTCAG	1 cut(s)	551
BseRI	GAGGAG	3 cut(s)	6, 398, 603
BseSI	GKGCMC	1 cut(s)	550
BseYI	CCCAGC	2 cut(s)	598, 602
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	60, 618
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	121, 550
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	357, 513
BslI	CCNNNNNNNGG	4 cut(s)	26, 312, 509, 587
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	357, 513
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	60, 618
Bsp1286I	GDGCHC	3 cut(s)	121, 291, 550
Bsp143I	GATC	2 cut(s)	261, 625
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	60, 618
BspCNI	CTCAG	1 cut(s)	552
BspFNI	CGCG	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	235, 372, 373, 501
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	261, 625
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	97, 202, 271
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	560
BstENI	CCTNNNNNAGG	2 cut(s)	24, 310
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	264, 628
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	261, 625
BstNI	CCWGG	1 cut(s)	147
BstPAI	GACNNNNGTC	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	133, 145
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	60, 618
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	3 cut(s)	207, 352, 548
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	264
Cfr13I	GGNCC	4 cut(s)	29, 371, 500, 617
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	2 cut(s)	263, 627
DpnII	GATC	2 cut(s)	261, 625
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	121, 291
Eco47I	GGWCC	3 cut(s)	29, 371, 500
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	66, 524
EcoICRI	GAGCTC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	2 cut(s)	24, 310
EcoO109I	RGGNCCY	2 cut(s)	371, 500
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	2 cut(s)	121, 291
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	266, 497, 518
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FaqI	GGGAC	2 cut(s)	357, 513
FatI	CATG	1 cut(s)	264
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	2 cut(s)	121, 291
FspBI	CTAG	1 cut(s)	632
GsaI	CCCAGC	2 cut(s)	602, 606
HaeIII	GGCC	2 cut(s)	60, 618
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	3 cut(s)	4, 276, 442
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	235, 400
Hpy166II	GTNNAC	2 cut(s)	198, 548
Hpy188I	TCNGA	4 cut(s)	123, 261, 379, 561
Hpy188III	TCNNGA	2 cut(s)	265, 361
Hpy8I	GTNNAC	2 cut(s)	198, 548
HpyAV	CCTTC	3 cut(s)	30, 90, 199
HpyCH4III	ACNGT	3 cut(s)	97, 202, 271
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	548
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	268
KflI	GGGWCCC	1 cut(s)	371
Kzo9I	GATC	2 cut(s)	261, 625
LmnI	GCTCC	1 cut(s)	116
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	484, 655
MalI	GATC	2 cut(s)	263, 627
MboI	GATC	2 cut(s)	261, 625
MboII	GAAGA	4 cut(s)	117, 134, 238, 569
MhlI	GDGCHC	3 cut(s)	121, 291, 550
MluCI	AATT	2 cut(s)	507, 531
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	3 cut(s)	253, 331, 400
MnlI	CCTC	7 cut(s)	27, 144, 306, 376, 379, 385, 581
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	4 cut(s)	174, 326, 405, 694
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 147
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	570
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	261, 625
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	4 cut(s)	235, 372, 373, 501
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	4, 276
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PpuMI	RGGWCCY	2 cut(s)	371, 500
PshAI	GACNNNNGTC	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	121
Psp5II	RGGWCCY	2 cut(s)	371, 500
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	2 cut(s)	598, 602
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	4 cut(s)	235, 372, 373, 501
PspPI	GGNCC	4 cut(s)	29, 371, 500, 617
PspPPI	RGGWCCY	2 cut(s)	371, 500
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	4 cut(s)	174, 326, 405, 694
Sau3AI	GATC	2 cut(s)	261, 625
Sau96I	GGNCC	4 cut(s)	29, 371, 500, 617
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	135, 147
SduI	GDGCHC	3 cut(s)	121, 291, 550
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	3 cut(s)	29, 371, 500
Sse9I	AATT	2 cut(s)	507, 531
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	133, 145
TaaI	ACNGT	3 cut(s)	97, 202, 271
TaiI	ACGT	1 cut(s)	427
TaqII	GACCGA	2 cut(s)	46, 140
TasI	AATT	2 cut(s)	507, 531
TfiI	GAWTC	2 cut(s)	4, 276
Tru1I	TTAA	4 cut(s)	174, 326, 405, 694
Tru9I	TTAA	4 cut(s)	174, 326, 405, 694
TscAI	CASTG	3 cut(s)	207, 352, 548
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	3 cut(s)	207, 352, 548
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	3 cut(s)	29, 371, 500
XagI	CCTNNNNNAGG	2 cut(s)	24, 310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 244
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.