Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019832

Physical Location & Seq

Genomic Coordinates Reverse (-)

84570164 .. 84570451

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG614100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTGGTTTGTTGGACGTGGTTTCAGCGACAGGAGTCTTGCATCTCAGGGAAACACAAAACCTGATATGGAAATAGTAACAAGAGTTATGGGACCTGAAATTGGCTACTTAACAACCCCGATAATTCTGCTTCAGTGTGCACTTATTGTTCTGAGCCAACGCGACAATCTTCCAAAGGGAGGAGTTTTCCCAGCTGGGATTGTATTTGGCCCAACCGATCTCCAAGAAAGGCTACAAGAAAATGGAGTTACTTTTGATGTTATTTCGAAGAATGCTATTTCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

95

Amino Acids

10.37

Weight (kDa)

5.65

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019832)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g05430
rosa_chinensis	RchiOBHm_Chr4g0415101
rosa_laevigata	RLG00000021663 RLG00000021666
rosa_multiflora	Rmu_sc0021992.1_g000008
rosa_samantha	Rh2DG614100 Rh4CG202800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	101, 179
AjiI	CACGTC	1 cut(s)	17
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	92, 209
AsuII	TTCGAA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	92, 209
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	1 cut(s)	50
BoxI	GACNNNNGTC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 179
BseLI	CCNNNNNNNGG	2 cut(s)	101, 179
BseMII	CTCAG	2 cut(s)	59, 143
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	190, 194
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	101, 179
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	58, 144
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	266
BssMI	GATC	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	45, 152
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	92, 209
CviJI	RGCY	5 cut(s)	105, 156, 194, 210, 232
CviKI_1	RGCY	5 cut(s)	105, 156, 194, 210, 232
DdeI	CTNAG	2 cut(s)	45, 152
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	92
FaiI	YATR	2 cut(s)	68, 89
FaqI	GGGAC	1 cut(s)	105
GsaI	CCCAGC	2 cut(s)	194, 198
HaeIII	GGCC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	41, 140
HpyF3I	CTNAG	2 cut(s)	45, 152
HpySE526I	ACGT	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	16, 32, 75, 108, 180, 204
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	76, 247
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	161, 280
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	99, 123
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	173
MseI	TTAA	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	277
MvnI	CGCG	1 cut(s)	162
NdeII	GATC	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	266
PctI	GAATGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	92
PspFI	CCCAGC	2 cut(s)	190, 194
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	92, 209
PspPPI	RGGWCCY	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	92, 209
SchI	GAGTC	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	19, 64, 97, 196
SfaNI	GCATC	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	1 cut(s)	92
Sse9I	AATT	2 cut(s)	99, 123
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	99, 123
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	140
TspRI	CASTG	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.