pycom17g08760

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015674
Physical Location & Seq
Reverse (-)
6606758 .. 6608089
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1332 bp
ATGAAAACTGAAGTTCGAGGAAGCGTTACCTCCATTTCTCTCCAAAATCCAAGTACTGCTCTCCTCACCACCTCTCAGGGCACGTCTCTCACCGGTGCGCTTACCGGGTGTCTCGGAAGCCTCGACGGGGCATGTATTGAGAAGCTACTACTTCACTGTGCAAGTGCCCTAGAGAGCAATGATGTGCCCTTGGCTCAACAAGTGATGTGGGTGCTCAACAATGTTGCCTCTTCTGTTGGTGCCCCTAACCAAAGGCTCACCTCATGGATCTTGAGGGCACTAATTTCAAGAGCCTCAAAGGTTTGCCCTACACCTATGAATTTTAATGGAAGCAGTAGCACTAGTACCATTCCGAGTAGGTTGATGTCGGTGACCGAGCTAGCCGGGTATGTTGATCTAATCCCATGGCACCGATTCGGATATTGTGCATCGAATAGTGCAATTTTTAAGGCAATTCAAGGGTGCCCAAAAGTTCATATCTTAGATTTTAGCATCACTCATTGTATGCAATGGCCTACTTTAATAGATGCATTGGCCAAAAGGCCTGAGGGTCCTCCTTTGCTTAGAGTCACTGTGCTTAATTGGAGGCCACAAGTCCCTCCTTTGCTCAATGTTTCAAGCGAAGAAGTTGGTCTTCGTTTGGGGAATTTCTCTAGGTTTAGAGATGTCCCTTTTGAGTTCAATGTGATTGAAAACTCATCCTCTTTGGAATTGCTAGTTACCACTGAATTAAACCCTTCCTCACTAGACCTCCGGGAAGATGAGGTTTTGGTTGTGAATTGTCAAAATTGGTTACGCTATCTTTCCGATGAGCCACGTGGTGGTATCCCTGGCCATCAAGATGGTTCGATGCGCAACACTTTCCTTAACACGATTAGATCCCTTAACACTAGAATCATAGTTGTGGTAGATGAAGATTCTGATCTTAGTGCACCAAGTCTTAGCTCAAGAATAACAACTTGTTTTAATTATCTTTGGATACCCTTTGATTCCTTGGAAACATTCTTGCCCAAAGATAGTACCCAAAGGATGGATTATGAATCTGATGTTGGTCACAAAATTGAAAACATTATTGGTTTTGAAGGGCACCAAAGAATAGAGAGGTTGGAGTCAGGTGTCACAATGTCACAAAGATTGAGAAACATTGGTTTTTCAAGTATCATATTTTGTGAAGAGACTGCTAGGGAAGTCAAGGCCTTGCTAGATGAACATGCAAGTGGTTGGGGCATGAAACGTGAAGAAGATATGTTGGTGCTCACATGGAAGGGACACAACTCAGTTTTTGCCACAGCTTGGGTCCCAAATCCAAATGGGTTGCTAATTGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

444

Amino Acids

49.09

Weight (kDa)

5.39

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 47 - 432 2.9e-87 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43780
malus_domestica MD09G1103000.v1.1 MD17G1090800.v1.1
prunus_persica Prupe.3G222800_v2.0.a1
pyrus_communis pycom09g02620 pycom17g08760
rosa_chinensis RchiOBHm_Chr2g0160531
rosa_laevigata RLG00000021220
rosa_multiflora Rmu_sc0000674.1_g000006
rosa_roxburghii Rroxscaffold_2G00089740
rosa_rugosa Rorug02G0483600
rosa_samantha Rh2AG548900 Rh2BG562600 Rh2CG533200 Rh2DG571900
rosa_wichuraiana Rw2G045440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 854
AccB1I GGYRCC 4 cut(s) 239, 408, 462, 1086
AccB7I CCANNNNNTGG 3 cut(s) 821, 1030, 1293
AclWI GGATC 2 cut(s) 275, 873
AcoI YGGCCR 2 cut(s) 534, 832
AcsI RAATTY 2 cut(s) 319, 646
AcuI CTGAAG 1 cut(s) 30
AcvI CACGTG 1 cut(s) 818
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 3 cut(s) 55, 346, 1021
AfiI CCNNNNNNNGG 4 cut(s) 127, 821, 1030, 1293
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 8 cut(s) 288, 458, 618, 682, 692, 1064, 1082, 1155
AhlI ACTAGT 1 cut(s) 341
AjiI CACGTC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 4 cut(s) 1032, 1056, 1064, 1088
AluBI AGCT 4 cut(s) 145, 379, 945, 1292
AluI AGCT 4 cut(s) 145, 379, 945, 1292
Alw21I GWGCWC 3 cut(s) 216, 934, 1257
Alw26I GTCTC 3 cut(s) 90, 116, 1169
Alw44I GTGCAC 1 cut(s) 930
AlwI GGATC 2 cut(s) 275, 873
AoxI GGCC 6 cut(s) 512, 534, 542, 587, 832, 1194
ApaLI GTGCAC 1 cut(s) 930
ApoI RAATTY 2 cut(s) 319, 646
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 2 cut(s) 100, 855
AspS9I GGNCC 2 cut(s) 551, 1297
AsuC2I CCSGG 3 cut(s) 106, 385, 755
AsuHPI GGTGA 4 cut(s) 58, 82, 250, 382
AsuNHI GCTAGC 1 cut(s) 379
AvaII GGWCC 2 cut(s) 551, 1297
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 8 cut(s) 83, 169, 189, 244, 280, 467, 934, 1089
BalI TGGCCA 2 cut(s) 536, 834
BanI GGYRCC 4 cut(s) 239, 408, 462, 1086
BbrPI CACGTG 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 3 cut(s) 216, 934, 1257
BccI CCATC 3 cut(s) 836, 843, 1024
BciT130I CCWGG 1 cut(s) 831
BciVI GTATCC 2 cut(s) 836, 972
BcnI CCSGG 3 cut(s) 106, 385, 755
BcoDI GTCTC 3 cut(s) 90, 116, 1169
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 9 cut(s) 170, 342, 380, 654, 716, 746, 891, 1182, 1202
BfuI GTATCC 2 cut(s) 836, 972
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 4 cut(s) 106, 385, 755, 831
Bme18I GGWCC 2 cut(s) 551, 1297
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 551, 1297
BmiI GGNNCC 7 cut(s) 241, 410, 464, 552, 1088, 1298, 1299
BmrFI CCNGG 4 cut(s) 106, 385, 755, 831
BmsI GCATC 4 cut(s) 437, 501, 517, 840
BmtI GCTAGC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 292, 931
BpuMI CCSGG 3 cut(s) 106, 385, 755
BsaAI YACGTR 1 cut(s) 818
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 4 cut(s) 189, 404, 829, 993
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 821, 1030, 1293
Bse118I RCCGGY 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 546
Bse3DI GCAATG 2 cut(s) 184, 515
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 4 cut(s) 189, 404, 829, 993
BseGI GGATG 2 cut(s) 698, 1035
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 4 cut(s) 127, 821, 1030, 1293
BseMI GCAATG 2 cut(s) 184, 515
BseMII CTCAG 3 cut(s) 89, 537, 1290
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 8 cut(s) 83, 169, 189, 244, 280, 467, 934, 1089
BshFI GGCC 6 cut(s) 514, 536, 544, 589, 834, 1196
BshNI GGYRCC 4 cut(s) 239, 408, 462, 1086
BshTI ACCGGT 1 cut(s) 92
BsiHKAI GWGCWC 3 cut(s) 216, 934, 1257
BsiSI CCGG 4 cut(s) 93, 105, 384, 754
BslFI GGGAC 4 cut(s) 581, 653, 1281, 1283
BslI CCNNNNNNNGG 4 cut(s) 127, 821, 1030, 1293
BsmAI GTCTC 3 cut(s) 90, 116, 1169
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 4 cut(s) 581, 653, 1281, 1283
BsnI GGCC 6 cut(s) 514, 536, 544, 589, 834, 1196
Bsp143I GATC 4 cut(s) 267, 394, 878, 922
Bsp19I CCATGG 1 cut(s) 404
BspANI GGCC 6 cut(s) 514, 536, 544, 589, 834, 1196
BspCNI CTCAG 3 cut(s) 88, 538, 1289
BspLI GGNNCC 7 cut(s) 241, 410, 464, 552, 1088, 1298, 1299
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 2 cut(s) 275, 873
BspT107I GGYRCC 4 cut(s) 239, 408, 462, 1086
BsrDI GCAATG 2 cut(s) 184, 515
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 4 cut(s) 189, 404, 829, 993
BssMI GATC 4 cut(s) 267, 394, 878, 922
BssT1I CCWWGG 3 cut(s) 189, 404, 993
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 2 cut(s) 158, 574
Bst6I CTCTTC 2 cut(s) 235, 1167
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 7 cut(s) 75, 481, 546, 563, 926, 941, 1276
BstDSI CCRYGG 1 cut(s) 404
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 2 cut(s) 698, 1035
BstHHI GCGC 2 cut(s) 100, 855
BstKTI GATC 4 cut(s) 270, 397, 881, 925
BstMAI GTCTC 3 cut(s) 90, 116, 1169
BstMBI GATC 4 cut(s) 267, 394, 878, 922
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 2 cut(s) 135, 1214
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 104, 383, 753, 829
BstSLI GKGCMC 8 cut(s) 83, 169, 189, 244, 280, 467, 934, 1089
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 2 cut(s) 267, 878
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 2 cut(s) 267, 878
Bsu36I CCTNAGG 1 cut(s) 546
BsuI GTATCC 2 cut(s) 836, 972
BsuRI GGCC 6 cut(s) 514, 536, 544, 589, 834, 1196
BtgI CCRYGG 1 cut(s) 404
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 2 cut(s) 698, 1035
BtsIMutI CAGTG 3 cut(s) 154, 570, 723
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 2 cut(s) 100, 855
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 551, 1297
Csp6I GTAC 3 cut(s) 54, 345, 1020
CspAI ACCGGT 1 cut(s) 92
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviAII CATG 6 cut(s) 132, 264, 405, 1211, 1228, 1260
CviQI GTAC 3 cut(s) 54, 345, 1020
DdeI CTNAG 7 cut(s) 75, 481, 546, 563, 926, 941, 1276
DpnI GATC 4 cut(s) 269, 396, 880, 924
DpnII GATC 4 cut(s) 267, 394, 878, 922
DraIII CACNNNGTG 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 534, 832
Eam1104I CTCTTC 2 cut(s) 235, 1167
EarI CTCTTC 2 cut(s) 235, 1167
Eco130I CCWWGG 3 cut(s) 189, 404, 993
Eco147I AGGCCT 2 cut(s) 544, 1196
Eco47I GGWCC 2 cut(s) 551, 1297
Eco57I CTGAAG 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 818
Eco81I CCTNAGG 1 cut(s) 546
Eco91I GGTNACC 1 cut(s) 370
EcoO109I RGGNCCY 2 cut(s) 551, 1297
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 3 cut(s) 189, 404, 993
EcoT22I ATGCAT 1 cut(s) 532
ErhI CCWWGG 3 cut(s) 189, 404, 993
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 6 cut(s) 135, 267, 408, 1214, 1231, 1263
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 4 cut(s) 581, 653, 1281, 1283
FatI CATG 6 cut(s) 131, 263, 404, 1210, 1227, 1259
FokI GGATG 2 cut(s) 685, 1042
FspBI CTAG 9 cut(s) 170, 342, 380, 654, 716, 746, 891, 1182, 1202
FspI TGCGCA 1 cut(s) 854
GlaI GCGC 2 cut(s) 99, 854
HaeIII GGCC 6 cut(s) 514, 536, 544, 589, 834, 1196
HapII CCGG 4 cut(s) 93, 105, 384, 754
HhaI GCGC 2 cut(s) 100, 855
Hin1II CATG 6 cut(s) 135, 267, 408, 1214, 1231, 1263
Hin6I GCGC 2 cut(s) 98, 853
HinP1I GCGC 2 cut(s) 98, 853
HinfI GANTC 7 cut(s) 414, 567, 894, 917, 989, 1040, 1109
HpaII CCGG 4 cut(s) 93, 105, 384, 754
HphI GGTGA 4 cut(s) 58, 82, 250, 382
Hpy166II GTNNAC 1 cut(s) 932
Hpy188I TCNGA 6 cut(s) 116, 354, 419, 808, 922, 1045
Hpy188III TCNNGA 4 cut(s) 271, 288, 839, 948
Hpy8I GTNNAC 1 cut(s) 932
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 747, 1076, 1258
HpyCH4III ACNGT 2 cut(s) 158, 574
HpyCH4IV ACGT 3 cut(s) 83, 817, 1234
HpyCH4V TGCA 7 cut(s) 161, 428, 440, 508, 530, 932, 1214
HpyF3I CTNAG 7 cut(s) 75, 481, 546, 563, 926, 941, 1276
HpySE526I ACGT 3 cut(s) 83, 817, 1234
Hsp92II CATG 6 cut(s) 135, 267, 408, 1214, 1231, 1263
HspAI GCGC 2 cut(s) 98, 853
KflI GGGWCCC 1 cut(s) 1297
Kzo9I GATC 4 cut(s) 267, 394, 878, 922
LpnPI CCDG 9 cut(s) 62, 106, 118, 397, 558, 767, 816, 843, 1098
LweI GCATC 4 cut(s) 437, 501, 517, 840
MaeI CTAG 9 cut(s) 170, 342, 380, 654, 716, 746, 891, 1182, 1202
MaeII ACGT 3 cut(s) 83, 817, 1234
MaeIII GTNAC 8 cut(s) 25, 370, 568, 718, 792, 1052, 1117, 1125
MalI GATC 4 cut(s) 269, 396, 880, 924
MboI GATC 4 cut(s) 267, 394, 878, 922
MboII GAAGA 8 cut(s) 222, 626, 635, 770, 926, 1184, 1250, 1253
MflI RGATCY 2 cut(s) 267, 878
MlsI TGGCCA 2 cut(s) 536, 834
MluNI TGGCCA 2 cut(s) 536, 834
MlyI GAGTC 2 cut(s) 576, 1118
MmeI TCCRAC 1 cut(s) 1086
Mox20I TGGCCA 2 cut(s) 536, 834
Mph1103I ATGCAT 1 cut(s) 532
MscI TGGCCA 2 cut(s) 536, 834
MseI TTAA 9 cut(s) 324, 447, 521, 579, 731, 867, 885, 966, 1330
MslI CAYNNNNRTG 3 cut(s) 840, 902, 1215
Msp20I TGGCCA 2 cut(s) 536, 834
MspI CCGG 4 cut(s) 93, 105, 384, 754
MspR9I CCNGG 4 cut(s) 106, 385, 755, 831
MvaI CCWGG 1 cut(s) 831
NciI CCSGG 3 cut(s) 106, 385, 755
NcoI CCATGG 1 cut(s) 404
NdeII GATC 4 cut(s) 267, 394, 878, 922
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 6 cut(s) 135, 267, 408, 1214, 1231, 1263
NlaIV GGNNCC 7 cut(s) 241, 410, 464, 552, 1088, 1298, 1299
NmuCI GTSAC 5 cut(s) 370, 568, 1052, 1117, 1125
NsbI TGCGCA 1 cut(s) 854
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 2 cut(s) 135, 1214
PceI AGGCCT 2 cut(s) 544, 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 5 cut(s) 414, 894, 917, 989, 1040
PflMI CCANNNNNTGG 3 cut(s) 821, 1030, 1293
PfoI TCCNGGA 1 cut(s) 753
PinAI ACCGGT 1 cut(s) 92
PleI GAGTC 2 cut(s) 575, 1117
PmaCI CACGTG 1 cut(s) 818
PmlI CACGTG 1 cut(s) 818
PpsI GAGTC 2 cut(s) 575, 1117
Ppu21I YACGTR 1 cut(s) 818
PpuMI RGGWCCY 2 cut(s) 551, 1297
Psp5II RGGWCCY 2 cut(s) 551, 1297
Psp6I CCWGG 1 cut(s) 829
PspCI CACGTG 1 cut(s) 818
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 7 cut(s) 241, 410, 464, 552, 1088, 1298, 1299
PspPI GGNCC 2 cut(s) 551, 1297
PspPPI RGGWCCY 2 cut(s) 551, 1297
PsuI RGATCY 2 cut(s) 267, 878
RsaI GTAC 3 cut(s) 55, 346, 1021
RsaNI GTAC 3 cut(s) 54, 345, 1020
RseI CAYNNNNRTG 3 cut(s) 840, 902, 1215
SaqAI TTAA 9 cut(s) 324, 447, 521, 579, 731, 867, 885, 966, 1330
Sau3AI GATC 4 cut(s) 267, 394, 878, 922
Sau96I GGNCC 2 cut(s) 551, 1297
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 2 cut(s) 576, 1118
ScrFI CCNGG 4 cut(s) 106, 385, 755, 831
SfaNI GCATC 4 cut(s) 437, 501, 517, 840
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 2 cut(s) 551, 1297
SmiMI CAYNNNNRTG 3 cut(s) 840, 902, 1215
SmlI CTYRAG 2 cut(s) 271, 946
SmoI CTYRAG 2 cut(s) 271, 946
SpeI ACTAGT 1 cut(s) 341
SseBI AGGCCT 2 cut(s) 544, 1196
SspMI CTAG 9 cut(s) 170, 342, 380, 654, 716, 746, 891, 1182, 1202
StuI AGGCCT 2 cut(s) 544, 1196
StyD4I CCNGG 4 cut(s) 104, 383, 753, 829
StyI CCWWGG 3 cut(s) 189, 404, 993
TaaI ACNGT 2 cut(s) 158, 574
TaiI ACGT 3 cut(s) 86, 820, 1237
TaqI TCGA 4 cut(s) 16, 123, 431, 848
TaqII GACCGA 1 cut(s) 389
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 5 cut(s) 414, 894, 917, 989, 1040
Tru1I TTAA 9 cut(s) 324, 447, 521, 579, 731, 867, 885, 966, 1330
Tru9I TTAA 9 cut(s) 324, 447, 521, 579, 731, 867, 885, 966, 1330
TscAI CASTG 3 cut(s) 161, 577, 730
TseFI GTSAC 5 cut(s) 370, 568, 1052, 1117, 1125
Tsp45I GTSAC 5 cut(s) 370, 568, 1052, 1117, 1125
TspDTI ATGAA 7 cut(s) 17, 332, 464, 927, 1053, 1221, 1244
TspRI CASTG 3 cut(s) 161, 577, 730
Van91I CCANNNNNTGG 3 cut(s) 821, 1030, 1293
VneI GTGCAC 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 551, 1297
XapI RAATTY 2 cut(s) 319, 646
XceI RCATGY 2 cut(s) 135, 1214
XspI CTAG 9 cut(s) 170, 342, 380, 654, 716, 746, 891, 1182, 1202
ZrmI AGTACT 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.