Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0021155

Physical Location & Seq

Genomic Coordinates Forward (+)

7131137 .. 7131648

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTGCCCCGTTCGATATCTTAAACCCGATTTCTGGTAGCAGTGTTCTTGTTGATGAGGACTTGAATGTGGCTTCATTTCAAGGCTTGGATGTAATTGGCAGCTTACTGTTGAAATGGAACCAGCAAATAACAATCCTGGGCATTCAAGCCATGGATATGGTTGCAGTTACTTTGCATTTTCCTCAAGAATTTCTGTCGACTGTAATGTTCAAGTCAGGCAATATTATTATGCCACTATTATTGTTCTGTCAGGATGAAAGGGAAGGGAGAAGGTGGCCGGAGGAAGTAAATATGGGCAAGGAGTGTGGACTAAAAATAGGAGACGTCGAAGTTAAACAAGAGTCAAAGCTCCCCCATTTCAATGAGAATTTTCCCAAGTTAGAGTACCCATCTGCACCATGGTTGGGTTTGCTCTTCACTTATTGGTGCCACATTTGCCAGGTAATAAGATATTACAACATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

157

Amino Acids

17.82

Weight (kDa)

4.84

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021155)

Species	Orthologous Gene IDs
malus_domestica	MD09G1110300.v1.1 MD17G1098000.v1.1
prunus_persica	Prupe.3G216200_v2.0.a1
pyrus_communis	pycom09g03270 pycom17g09360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	191, 370
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	35, 407
AgsI	TTSAA	6 cut(s)	67, 83, 115, 149, 214, 364
AjnI	CCWGG	2 cut(s)	138, 441
AluBI	AGCT	2 cut(s)	105, 352
AluI	AGCT	2 cut(s)	105, 352
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	191, 370
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	2 cut(s)	140, 443
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	140, 443
BmiI	GGNNCC	2 cut(s)	122, 431
BmrFI	CCNGG	2 cut(s)	140, 443
BpuEI	CTTGAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	139, 153, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 407
BseBI	CCWGG	2 cut(s)	140, 443
BseDI	CCNNGG	3 cut(s)	139, 153, 401
BseGI	GGATG	2 cut(s)	97, 262
BseLI	CCNNNNNNNGG	2 cut(s)	35, 407
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	35, 407
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	280
Bsp19I	CCATGG	2 cut(s)	153, 401
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	122, 431
BspQI	GCTCTTC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	139, 153, 401
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	153, 401
Bst2UI	CCWGG	2 cut(s)	140, 443
Bst4CI	ACNGT	2 cut(s)	111, 205
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	327
BstDSI	CCRYGG	2 cut(s)	153, 401
BstF5I	GGATG	2 cut(s)	97, 262
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	2 cut(s)	140, 443
BstSCI	CCNGG	2 cut(s)	138, 441
BstV1I	GCAGC	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	2 cut(s)	153, 401
BtsCI	GGATG	2 cut(s)	97, 262
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 289, 324
CviAII	CATG	2 cut(s)	154, 402
CviJI	RGCY	6 cut(s)	74, 87, 105, 152, 280, 352
CviKI_1	RGCY	6 cut(s)	74, 87, 105, 152, 280, 352
CviQI	GTAC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	153, 401
Eco32I	GATATC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	138, 441
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	153, 401
ErhI	CCWWGG	2 cut(s)	153, 401
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	2 cut(s)	157, 405
FaiI	YATR	6 cut(s)	155, 161, 233, 296, 403, 464
FatI	CATG	2 cut(s)	153, 401
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	104, 269
Fsp4HI	GCNGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	157, 405
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	201, 311
Hpy188III	TCNNGA	2 cut(s)	188, 254
Hpy8I	GTNNAC	2 cut(s)	201, 311
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	260, 267
HpyCH4III	ACNGT	2 cut(s)	111, 205
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	167, 178, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	157, 405
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	21, 125, 137, 152, 204, 239, 294, 428, 455
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	409
MluCI	AATT	3 cut(s)	96, 191, 370
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	3 cut(s)	52, 195, 277
MseI	TTAA	3 cut(s)	23, 336, 469
MslI	CAYNNNNRTG	2 cut(s)	158, 363
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	140, 443
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	140, 443
MwoI	GCNNNNNNNGC	1 cut(s)	438
NcoI	CCATGG	2 cut(s)	153, 401
NlaIII	CATG	2 cut(s)	157, 405
NlaIV	GGNNCC	2 cut(s)	122, 431
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	138, 441
PspGI	CCWGG	2 cut(s)	138, 441
PspN4I	GGNNCC	2 cut(s)	122, 431
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	158, 363
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	23, 336, 469
SatI	GCNGC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	140, 443
SetI	ASST	5 cut(s)	107, 278, 330, 354, 447
SmiMI	CAYNNNNRTG	2 cut(s)	158, 363
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	96, 191, 370
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	138, 441
StyI	CCWWGG	2 cut(s)	153, 401
TaaI	ACNGT	2 cut(s)	111, 205
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	3 cut(s)	15, 200, 330
TasI	AATT	3 cut(s)	96, 191, 370
Tru1I	TTAA	3 cut(s)	23, 336, 469
Tru9I	TTAA	3 cut(s)	23, 336, 469
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	66, 273
TspRI	CASTG	1 cut(s)	49
XapI	RAATTY	2 cut(s)	191, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.