Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0021139

Physical Location & Seq

Genomic Coordinates Reverse (-)

7361880 .. 7362261

Gene Structure 382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCATTATGTATGCCTTACAACATCTGACATATTCCTTTATCTGATACAGGTTAGAATTTGTAGGGAGAAAGCAACTGGTCACGCATATACAATGAAGAAGCTTAAGAAATCAGTGGAGCATGTGAAAGTTGAGAGGAATCTACTTGTTGAGGTTGATAGTAATTGTATTGTCAAGCTTTATTGTTTGTTCCAGAATGAAGAGTACTTGTATCTAATTATGGAATATCTTCCTAGTTGGGATATGATGACTTTATTGATGCACAAGGACACATTGACAAAAGATGAAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

99

Amino Acids

11.69

Weight (kDa)

6.4

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 97	4.4e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021139)

Species	Orthologous Gene IDs
malus_domestica	MD15G1269700.v1.1 MD16G1194900.v1.1
pyrus_communis	pycom14g05980 pycom17g09670
rosa_multiflora	Rmu_co8294415.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	103, 178, 290
AluI	AGCT	3 cut(s)	103, 178, 290
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	104
BmcAI	AGTACT	1 cut(s)	206
BmsI	GCATC	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	3 cut(s)	103, 178, 290
CviKI_1	RGCY	3 cut(s)	103, 178, 290
CviQI	GTAC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	125
FaiI	YATR	8 cut(s)	9, 13, 32, 88, 90, 123, 221, 245
FatI	CATG	1 cut(s)	121
FspBI	CTAG	1 cut(s)	234
Hin1II	CATG	1 cut(s)	125
HindIII	AAGCTT	3 cut(s)	101, 176, 288
HinfI	GANTC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	28, 45
Hpy188III	TCNNGA	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	4, 262
Hsp92II	CATG	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	3 cut(s)	35, 63, 206
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	80
MboII	GAAGA	3 cut(s)	109, 212, 221
MluCI	AATT	3 cut(s)	57, 163, 216
MnlI	CCTC	2 cut(s)	129, 145
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	104
NlaIII	CATG	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	206
SetI	ASST	5 cut(s)	54, 105, 156, 180, 292
SfaNI	GCATC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	57, 163, 216
SspMI	CTAG	1 cut(s)	234
TasI	AATT	3 cut(s)	57, 163, 216
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	110, 213
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.