pycom17g12940

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
10639719 .. 10641398
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1680 bp
ATGGCTGTTAGGGGTTCAATCCTAGTGGTTCTCCTTGTAATCTTCTCCTCCACTTTAGCAGCGATTGCTGGACTTCACAGCCACGACAATCACAACCCAAATGCCTCCACGCTTGCCGGCATACAACTGCCGGAGCACATGAGCTTCAACGCCATCTCATCCTCCTCCTCATCCCACACTGGCTGCAGCCTCAGCAGCTCTAAAAGAACAAACCAATCAGATTCAGCCATGGAAGATGTTGACGACTCTGACGACGGCGAAGCCGCACCCGAATTGAACCCTCATAAACAAACTATGAAGCTCCATCTACGGCACAGATCACAGGACAAACAATCCGAAAGAAAAAGCTCCGTGATCGAGTCCACAGTCCGAGACTTCATCAGAATTCAAACCCTCCACACAAGAATCGTCGAGAAAAAGAACCAGAACACAATTTCAAGGCTGCAGAAAGACAAGAAGCCGAAGCCCTACCAATCAAATCCGGTTGTGGCCCCTGCAGCCTCACCGGAGTCTTACACCAACGAGCTTTCAGGGCAGCTTCAGGCCACGTTGAAGTCTGGTGTCAGCCTCGGCTCCGGCGAGTACTTCATGGATGTTTTCATCGGTACACCCCCCAAACATTTCTCTTTAATTCTCGACACGGGCAGTGACCTTAACTGGGTCCAATGCGCGCCGTGCCACGACTGCTTCGAGCAGCAGGGCCCGCATTACGACCCGAAAGACTCATCTTCTTTTCTTGACATTAGCTGCAAGGATCCGCGGTGTCGATTGGTTTCTTCCCCGGATCCTGCACAGCCCTGCAAGTCCGAAAATCAAACGTGCCCGTATTTCTACTGGTACGGAGACAGCTCCAACACTACCGGCGATTTCTCCCTCGAAACCTTTACAGTGAACCTCACGACACCAACCAAGGCGGAGTTCAAGAGGGTGGAGAATGTGATGTTCGGATGCGGACATTGGAACAGAGGACTATTTCATGGGGCTGCGGGGTTGCTAGGGCTTGGCAGAGGCCCTCTTTCCTTTGCATCTCAGCTCCAATCGCTGTACGGACATTCGTTTTCCTACTGCCTTGTGGATCGAAACAGCGACGCGAATGTCAGCAGCAAGTTGATTTTCGGGGAGGACAAGAACCTCCTGAGCCACCCGAAATTGAGCTACACTTCCTTGGTGGGAGGGAAAGAAAACCCTGCTGATACATTCTACTATGTCGAGATAAAATCCGTCATGGTCGGCGGAGAAGCGGTGGACATACCGGCTGAGACTTGGAAATTGTCGCCGGAGGGTGCGGGCGGGACAATCATTGATTCCGGCACCACGTTGAGTTACTTTGCTGATCCTGCTTACCAAATGATCAAGGAGGCATTTGAGAAAAAGGTTAAAGGGTATCCAGTTGTGAACGACTTTCCAATTTTGAAACCTTGTTACAATGTGTCAGGTGTTGAGAAAATAGAGCTGCCGGAGTTCGCAATTGTGTTTGCGGATGGAGCTGTGTGGGATTTCCCAGTAGAGAACTACTTCATCCAGATCGAACCGCAGGAAATGGTCTGCCTGGCGGTGTTGGGGACTCCGAAATCCAGCGTTTCGATCATCGGAAACTATCAGCAGCAGAATTTTCATATCCTCTATGACACAAAGAAGTCCAGGCTAGGATATGCACCCATGAAATGTGCTGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

61.46

Weight (kDa)

5.8

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 194 - 553 9e-23 Eukaryotic aspartyl protease
TAXi_N PF14543 195 - 373 1.1e-52 Xylanase inhibitor N-terminal
TAXi_C PF14541 401 - 552 2e-35 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59080 AT3G59080
fragaria_vesca FvH4_6g38620
malus_domestica MD09G1149300.v1.1 MD17G1135600.v1.1
prunus_persica Prupe.3G177100_v2.0.a1
pyrus_communis pycom09g06860 pycom17g12940
rosa_chinensis RchiOBHm_Chr2g0152031
rosa_laevigata RLG00000020602
rosa_roxburghii Rroxscaffold_2G00096030
rosa_rugosa Rorug02G0430400
rosa_samantha Rh2AG491200 Rh2BG503500 Rh2CG477600 Rh2DG514800
rosa_wichuraiana Rw2G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1094
AccB1I GGYRCC 1 cut(s) 1310
AccII CGCG 3 cut(s) 671, 760, 1091
AclWI GGATC 6 cut(s) 749, 762, 779, 792, 1083, 1328
AcsI RAATTY 2 cut(s) 384, 1609
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 4 cut(s) 584, 607, 839, 1046
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 8 cut(s) 18, 148, 277, 389, 438, 553, 922, 1414
AjnI CCWGG 2 cut(s) 1548, 1640
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 3 cut(s) 366, 837, 1253
AlwI GGATC 6 cut(s) 749, 762, 779, 792, 1083, 1328
AoxI GGCC 4 cut(s) 489, 543, 700, 1009
ApaI GGGCCC 1 cut(s) 704
ApoI RAATTY 2 cut(s) 384, 1609
Asp700I GAANNNNTTC 1 cut(s) 1514
AspLEI GCGC 2 cut(s) 671, 673
AspS9I GGNCC 5 cut(s) 490, 661, 700, 701, 1010
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 1 cut(s) 495
AvaII GGWCC 1 cut(s) 661
BaeGI GKGCMC 2 cut(s) 704, 824
BamHI GGATCC 2 cut(s) 754, 784
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 161, 312, 1475
BceAI ACGGC 3 cut(s) 271, 326, 658
BciT130I CCWGG 2 cut(s) 1550, 1642
BciVI GTATCC 1 cut(s) 1395
BclI TGATCA 1 cut(s) 1350
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 3 cut(s) 366, 837, 1253
BfaI CTAG 3 cut(s) 23, 995, 1646
BfmI CTRYAG 3 cut(s) 184, 443, 495
BfuI GTATCC 1 cut(s) 1395
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 3 cut(s) 782, 1550, 1642
Bme18I GGWCC 1 cut(s) 661
BmgT120I GGNCC 5 cut(s) 490, 661, 700, 701, 1010
BmiI GGNNCC 7 cut(s) 492, 574, 662, 702, 756, 786, 1312
BmrFI CCNGG 3 cut(s) 782, 1550, 1642
BmrI ACTGGG 2 cut(s) 667, 1496
BmsI GCATC 2 cut(s) 938, 1034
BmuI ACTGGG 2 cut(s) 667, 1496
Bpu10I CCTNAGC 2 cut(s) 191, 1136
BpuMI CCSGG 1 cut(s) 782
BsaJI CCNNGG 6 cut(s) 228, 568, 758, 780, 909, 1164
BsaWI WCCGGW 2 cut(s) 481, 505
BsaXI ACNNNNNCTCC 2 cut(s) 1227, 1257
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse118I RCCGGY 3 cut(s) 116, 860, 1252
Bse1I ACTGG 5 cut(s) 184, 662, 839, 1388, 1502
BseBI CCWGG 2 cut(s) 1550, 1642
BseDI CCNNGG 6 cut(s) 228, 568, 758, 780, 909, 1164
BseGI GGATG 6 cut(s) 158, 170, 598, 953, 1486, 1518
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMII CTCAG 4 cut(s) 205, 1043, 1127, 1248
BseNI ACTGG 5 cut(s) 184, 662, 839, 1388, 1502
BsePI GCGCGC 1 cut(s) 669
BseRI GAGGAG 3 cut(s) 37, 154, 157
BseSI GKGCMC 2 cut(s) 704, 824
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 3 cut(s) 671, 760, 1091
BshFI GGCC 4 cut(s) 491, 545, 702, 1011
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 2 cut(s) 1306, 1576
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 3 cut(s) 366, 837, 1253
BsmFI GGGAC 2 cut(s) 1306, 1576
BsnI GGCC 4 cut(s) 491, 545, 702, 1011
Bsp120I GGGCCC 1 cut(s) 700
Bsp1286I GDGCHC 3 cut(s) 138, 704, 824
Bsp143I GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 4 cut(s) 491, 545, 702, 1011
BspCNI CTCAG 4 cut(s) 204, 1042, 1128, 1249
BspFNI CGCG 3 cut(s) 671, 760, 1091
BspLI GGNNCC 7 cut(s) 492, 574, 662, 702, 756, 786, 1312
BspMAI CTGCAG 3 cut(s) 188, 447, 499
BspPI GGATC 6 cut(s) 749, 762, 779, 792, 1083, 1328
BspT107I GGYRCC 1 cut(s) 1310
BsrFI RCCGGY 3 cut(s) 116, 860, 1252
BsrI ACTGG 5 cut(s) 184, 662, 839, 1388, 1502
BssAI RCCGGY 3 cut(s) 116, 860, 1252
BssECI CCNNGG 6 cut(s) 228, 568, 758, 780, 909, 1164
BssHII GCGCGC 1 cut(s) 669
BssMI GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
BssT1I CCWWGG 3 cut(s) 228, 909, 1164
Bst2UI CCWGG 2 cut(s) 1550, 1642
Bst4CI ACNGT 2 cut(s) 367, 889
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 5 cut(s) 114, 118, 671, 704, 1288
BstDEI CTNAG 4 cut(s) 191, 1029, 1136, 1257
BstDSI CCRYGG 2 cut(s) 228, 758
BstF5I GGATG 6 cut(s) 158, 170, 598, 953, 1486, 1518
BstFNI CGCG 3 cut(s) 671, 760, 1091
BstHHI GCGC 2 cut(s) 671, 673
BstKTI GATC 9 cut(s) 320, 357, 757, 787, 1078, 1336, 1353, 1527, 1587
BstMAI GTCTC 3 cut(s) 366, 837, 1253
BstMBI GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
BstNI CCWGG 2 cut(s) 1550, 1642
BstSCI CCNGG 3 cut(s) 780, 1548, 1640
BstSFI CTRYAG 3 cut(s) 184, 443, 495
BstSLI GKGCMC 2 cut(s) 704, 824
BstUI CGCG 3 cut(s) 671, 760, 1091
BstX2I RGATCY 2 cut(s) 754, 784
BstYI RGATCY 2 cut(s) 754, 784
BsuI GTATCC 1 cut(s) 1395
BsuRI GGCC 4 cut(s) 491, 545, 702, 1011
BtgI CCRYGG 2 cut(s) 228, 758
BtsCI GGATG 6 cut(s) 158, 170, 598, 953, 1486, 1518
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 3 cut(s) 177, 652, 894
Cac8I GCNNGC 5 cut(s) 114, 118, 671, 704, 1288
CfoI GCGC 2 cut(s) 671, 673
Cfr10I RCCGGY 3 cut(s) 116, 860, 1252
Cfr13I GGNCC 5 cut(s) 490, 661, 700, 701, 1010
Cfr42I CCGCGG 1 cut(s) 761
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 4 cut(s) 583, 606, 838, 1045
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 6 cut(s) 139, 229, 589, 977, 1225, 1660
CviQI GTAC 4 cut(s) 583, 606, 838, 1045
DdeI CTNAG 4 cut(s) 191, 1029, 1136, 1257
DpnI GATC 9 cut(s) 319, 356, 756, 786, 1077, 1335, 1352, 1526, 1586
DpnII GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
DrdI GACNNNNNNGTC 1 cut(s) 1094
DseDI GACNNNNNNGTC 1 cut(s) 1094
EciI GGCGGA 2 cut(s) 929, 1248
Eco130I CCWWGG 3 cut(s) 228, 909, 1164
Eco24I GRGCYC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 524
EcoO109I RGGNCCY 2 cut(s) 700, 1010
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 1548, 1640
EcoT14I CCWWGG 3 cut(s) 228, 909, 1164
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 3 cut(s) 228, 909, 1164
FaeI CATG 6 cut(s) 142, 232, 592, 980, 1228, 1663
FaqI GGGAC 2 cut(s) 1306, 1576
FatI CATG 6 cut(s) 138, 228, 588, 976, 1224, 1659
FauI CCCGC 4 cut(s) 711, 979, 1279, 1283
FbaI TGATCA 1 cut(s) 1350
FokI GGATG 6 cut(s) 145, 157, 605, 960, 1493, 1505
FriOI GRGCYC 1 cut(s) 704
FspBI CTAG 3 cut(s) 23, 995, 1646
GlaI GCGC 2 cut(s) 670, 672
HaeIII GGCC 4 cut(s) 491, 545, 702, 1011
HgaI GACGC 1 cut(s) 1097
HhaI GCGC 2 cut(s) 671, 673
Hin1II CATG 6 cut(s) 142, 232, 592, 980, 1228, 1663
Hin6I GCGC 2 cut(s) 669, 671
HinP1I GCGC 2 cut(s) 669, 671
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 8 cut(s) 221, 245, 359, 405, 509, 722, 1304, 1564
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 6 cut(s) 241, 363, 608, 892, 1246, 1396
Hpy188I TCNGA 9 cut(s) 220, 250, 337, 371, 383, 808, 947, 1569, 1592
Hpy188III TCNNGA 8 cut(s) 412, 635, 737, 898, 922, 1135, 1210, 1522
Hpy8I GTNNAC 6 cut(s) 241, 363, 608, 892, 1246, 1396
Hpy99I CGWCG 3 cut(s) 257, 413, 1091
HpyCH4III ACNGT 2 cut(s) 367, 889
HpyCH4IV ACGT 3 cut(s) 548, 818, 1316
HpyCH4V TGCA 8 cut(s) 186, 445, 497, 750, 791, 801, 1025, 1655
HpyF3I CTNAG 4 cut(s) 191, 1029, 1136, 1257
HpySE526I ACGT 3 cut(s) 548, 818, 1316
Hsp92II CATG 6 cut(s) 142, 232, 592, 980, 1228, 1663
HspAI GCGC 2 cut(s) 669, 671
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 1350
KspI CCGCGG 1 cut(s) 761
Kzo9I GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
LmnI GCTCC 7 cut(s) 133, 306, 353, 578, 854, 1038, 1484
LweI GCATC 2 cut(s) 938, 1034
MaeI CTAG 3 cut(s) 23, 995, 1646
MaeII ACGT 3 cut(s) 548, 818, 1316
MaeIII GTNAC 3 cut(s) 647, 1322, 1421
MalI GATC 9 cut(s) 319, 356, 756, 786, 1077, 1335, 1352, 1526, 1586
MboI GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
MboII GAAGA 4 cut(s) 34, 245, 720, 768
MfeI CAATTG 1 cut(s) 1467
MflI RGATCY 2 cut(s) 754, 784
MhlI GDGCHC 3 cut(s) 138, 704, 824
MluCI AATT 9 cut(s) 272, 384, 432, 630, 1148, 1268, 1407, 1467, 1609
MlyI GAGTC 5 cut(s) 239, 368, 518, 716, 1558
MmeI TCCRAC 1 cut(s) 876
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 1514
MseI TTAA 3 cut(s) 629, 654, 1377
MspA1I CMGCKG 1 cut(s) 760
MspR9I CCNGG 3 cut(s) 782, 1550, 1642
MunI CAATTG 1 cut(s) 1467
MvaI CCWGG 2 cut(s) 1550, 1642
MvnI CGCG 3 cut(s) 671, 760, 1091
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 782
NcoI CCATGG 1 cut(s) 228
NdeII GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 142, 232, 592, 980, 1228, 1663
NlaIV GGNNCC 7 cut(s) 492, 574, 662, 702, 756, 786, 1312
NmeAIII GCCGAG 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 647
PauI GCGCGC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 576, 687
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 1514
PfeI GAWTC 3 cut(s) 221, 405, 1304
PleI GAGTC 5 cut(s) 239, 367, 517, 716, 1558
PpsI GAGTC 5 cut(s) 239, 367, 517, 716, 1558
Psp6I CCWGG 2 cut(s) 1548, 1640
PspGI CCWGG 2 cut(s) 1548, 1640
PspN4I GGNNCC 7 cut(s) 492, 574, 662, 702, 756, 786, 1312
PspOMI GGGCCC 1 cut(s) 700
PspPI GGNCC 5 cut(s) 490, 661, 700, 701, 1010
PstI CTGCAG 3 cut(s) 188, 447, 499
PsuI RGATCY 2 cut(s) 754, 784
PteI GCGCGC 1 cut(s) 669
RsaI GTAC 4 cut(s) 584, 607, 839, 1046
RsaNI GTAC 4 cut(s) 583, 606, 838, 1045
SacII CCGCGG 1 cut(s) 761
SaqAI TTAA 3 cut(s) 629, 654, 1377
Sau3AI GATC 9 cut(s) 317, 354, 754, 784, 1075, 1333, 1350, 1524, 1584
Sau96I GGNCC 5 cut(s) 490, 661, 700, 701, 1010
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 5 cut(s) 239, 368, 518, 716, 1558
ScrFI CCNGG 3 cut(s) 782, 1550, 1642
SduI GDGCHC 3 cut(s) 138, 704, 824
SfaNI GCATC 2 cut(s) 938, 1034
SfcI CTRYAG 3 cut(s) 184, 443, 495
Sfr303I CCGCGG 1 cut(s) 761
SgrBI CCGCGG 1 cut(s) 761
SinI GGWCC 1 cut(s) 661
Sse9I AATT 9 cut(s) 272, 384, 432, 630, 1148, 1268, 1407, 1467, 1609
SspMI CTAG 3 cut(s) 23, 995, 1646
StyD4I CCNGG 3 cut(s) 780, 1548, 1640
StyI CCWWGG 3 cut(s) 228, 909, 1164
TaaI ACNGT 2 cut(s) 367, 889
TaiI ACGT 3 cut(s) 551, 821, 1319
TasI AATT 9 cut(s) 272, 384, 432, 630, 1148, 1268, 1407, 1467, 1609
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 3 cut(s) 221, 405, 1304
Tru1I TTAA 3 cut(s) 629, 654, 1377
Tru9I TTAA 3 cut(s) 629, 654, 1377
TscAI CASTG 3 cut(s) 184, 652, 894
TseFI GTSAC 1 cut(s) 647
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 8 cut(s) 311, 367, 577, 589, 965, 1507, 1604, 1676
TspGWI ACGGA 4 cut(s) 340, 855, 1062, 1210
TspRI CASTG 3 cut(s) 184, 652, 894
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 2 cut(s) 384, 1609
XmnI GAANNNNTTC 1 cut(s) 1514
XspI CTAG 3 cut(s) 23, 995, 1646
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.