Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Reverse (-)

55217077 .. 55221920

Gene Structure 4844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0430400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGCGATGATGATATCCTCTCTTTGGCAATTCTGCTTTCTTTCACTTGCCCTTTCTTATGGTGTTGTTGAGCTTCAAGCTTCCCACCATGTCCATGACAACCTTCAAACTACCCAACTAACTTCAACACAGCCCCAAGCTAAAGAGCCTTATAGAACAGGCTATCATTTCCAGCCTCCCAAGAACTGGATCAATGATCCAAATGGGCCATTGATTTACAAGGGAATTTACCATCTTTTTTATCAATACAATCCCAAAGGTGTAGTTTGGGGCAACATTGTTTGGGCACATTCGACATCAACTGATCTTGTCAACTGGATCCCACATGAAGCTGCTATCTACCCATCACAGCCGTTCGATATCAACGGCTGCTGGTCGGGATCCGCCACAATCCTCCCTGGAGGCAAGCCAGCCATTTTATACACCGGAATCAACCGCCAACACCAACAAGTCCAAAACTTGGCATTTCCTAAAAACCTCTCAGACCCATTTCTTAGTGAATGGATCAAAATCCCACAAAACCCTCTGATATCTCCAACCCTAGCCAACCAAATCAATGCTACTGCTTTTAGGGACCCCACCACAGCATGGCTTGGTCCCGACAAGCATTGGAGATTAGTTATTGGGAGTTTAAGGAACCAAGCGGGAGTGGCTTATTTGTACAGGAGCAAAGATTTTCTCTACTGGGTGAAGGCAAAACATCCACTTCATTCACAAAAGAAAGCTGGCATGTGGGAGTGCCCCGATTTCTTTCCGGTTCTAAAAGATAGTTCTACTGGTGTTGGTGTTGACACATCCACATATGGTCCTCATGTCAAGCACGTCTTCAAGATCAGCCTTAACGATACTCGAAAAGAGTATTATGTAATTGGTACATATAACCCGAGCAAGGATATCTATATCCCAGACGAGGGATCAGTTGAGAGTGATTCTGGTTTGAGATATGATTATGGCAAGTTCTATGCTTCAAAAACCTTCTTCGACAGTGCTAAGAACCGCAGGATCTTGTGGGGATGGATTAATGAATCCTCAAATCCCAAAAGTGACATCAGGAAAGGATGGTCTGGACTCCAGGCAATTCCAAGGACCATTGTGCTTGATAAGTTTGGGAAACAGTTGGTGCAATGGCCTGTAGTAGAGCTTGAAAAGCTTAGAACAACTGAGGTCAAGTTGCCAAGCATTGTGCTTAAGGGAGAATCACTTAGGGAAGTACTTGGTGTCACAGCAGCCCAAGCTGATGTAGAAGTCGCATTTGAGATAAGTGACTTCAGGAAAGCAGAAGCGTTGGATCCAAGCTGGATTAATCCACAAATTTTATGTAGCAAAAAGGGTGCCTCGGTGAAAGGTGGTCTTGGACCATTTGGATTGTTCGCTTTGGCTTCAAAGGACTTGAAAGAAAACACAGCAGTCTTCTATAGAATCTTCAAGTCTCACAACAATTACAACAAATATGTGGTGCTTATGTGCAGTGACCAAAGCAGGTCTTCCTTAAATCAACATAATGATAAGACTACTTATGGGGCATTTGTAAATGTGGATCCTCTTCATGAGAAGCTGTCGCTAAGAAGCTTGATTGATCACTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACAGCTAGGGTTTATCCTACATTGGCTGTTGATGGTGATACCCACTTATATGCTTTCAACTATGGAAGTGAGAGTGTCAAAATCGCAGGAAGTGTGTGGAGCTTGAAAACCGCTAAAATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

582

Amino Acids

65.4

Weight (kDa)

8.98

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	56 - 377	7.6e-104	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	380 - 568	3e-23	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1470
AccB1I	GGYRCC	1 cut(s)	1331
AccB7I	CCANNNNNTGG	3 cut(s)	186, 460, 588
AciI	CCGC	5 cut(s)	384, 436, 644, 997, 1734
AcsI	RAATTY	2 cut(s)	225, 1311
AcuI	CTGAAG	1 cut(s)	1252
AfaI	GTAC	3 cut(s)	662, 874, 1212
AfiI	CCNNNNNNNGG	7 cut(s)	24, 186, 460, 588, 889, 910, 911
AflII	CTTAAG	1 cut(s)	1187
AjiI	CACGTC	1 cut(s)	823
AjnI	CCWGG	2 cut(s)	397, 1071
Alw26I	GTCTC	1 cut(s)	1434
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	2 cut(s)	206, 1127
ApeKI	GCWGC	3 cut(s)	332, 369, 1226
ApoI	RAATTY	2 cut(s)	225, 1311
AseI	ATTAAT	2 cut(s)	1020, 1302
AspS9I	GGNCC	6 cut(s)	206, 574, 596, 806, 1086, 1355
AsuHPI	GGTGA	3 cut(s)	700, 1351, 1670
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	5 cut(s)	574, 596, 806, 1086, 1355
BaeGI	GKGCMC	2 cut(s)	289, 743
BamHI	GGATCC	4 cut(s)	318, 380, 1288, 1537
BanI	GGYRCC	1 cut(s)	1331
BbsI	GAAGAC	3 cut(s)	817, 1402, 1476
BbvI	GCAGC	3 cut(s)	319, 356, 1238
BccI	CCATC	5 cut(s)	240, 352, 1008, 1053, 1649
BceAI	ACGGC	2 cut(s)	337, 382
BciT130I	CCWGG	2 cut(s)	399, 1073
BclI	TGATCA	1 cut(s)	1576
BcoDI	GTCTC	1 cut(s)	1434
BfaI	CTAG	2 cut(s)	542, 1629
BfmI	CTRYAG	3 cut(s)	1131, 1414, 1584
BfrI	CTTAAG	1 cut(s)	1187
BfuAI	ACCTGC	1 cut(s)	1470
BisI	GCNGC	3 cut(s)	333, 370, 1227
BlsI	GCNGC	3 cut(s)	334, 371, 1228
BmcAI	AGTACT	1 cut(s)	1212
Bme1390I	CCNGG	2 cut(s)	399, 1073
Bme18I	GGWCC	5 cut(s)	574, 596, 806, 1086, 1355
BmeT110I	CYCGRG	1 cut(s)	883
BmgBI	CACGTC	1 cut(s)	823
BmgT120I	GGNCC	6 cut(s)	206, 574, 596, 806, 1086, 1355
BmiI	GGNNCC	9 cut(s)	320, 382, 575, 576, 598, 638, 1290, 1333, 1539
BmrFI	CCNGG	2 cut(s)	399, 1073
BmrI	ACTGGG	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	3 cut(s)	817, 1402, 1476
BpmI	CTGGAG	2 cut(s)	420, 1055
BsaBI	GATNNNNATC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	397, 1082, 1335
BsaWI	WCCGGW	2 cut(s)	425, 754
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 186, 460, 588, 889, 910, 911
Bse1I	ACTGG	4 cut(s)	191, 320, 689, 781
Bse3DI	GCAATG	1 cut(s)	1130
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	2 cut(s)	399, 1073
BseDI	CCNNGG	3 cut(s)	397, 1082, 1335
BseGI	GGATG	4 cut(s)	700, 794, 1019, 1064
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	7 cut(s)	24, 186, 460, 588, 889, 910, 911
BseMI	GCAATG	1 cut(s)	1130
BseMII	CTCAG	2 cut(s)	495, 1152
BseNI	ACTGG	4 cut(s)	191, 320, 689, 781
BseSI	GKGCMC	2 cut(s)	289, 743
BseXI	GCAGC	3 cut(s)	319, 356, 1238
BsgI	GTGCAG	1 cut(s)	1486
BshFI	GGCC	2 cut(s)	208, 1129
BshNI	GGYRCC	1 cut(s)	1331
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	426, 755
BslFI	GGGAC	2 cut(s)	582, 587
BslI	CCNNNNNNNGG	7 cut(s)	24, 186, 460, 588, 889, 910, 911
BsmAI	GTCTC	1 cut(s)	1434
BsmFI	GGGAC	2 cut(s)	582, 587
BsnI	GGCC	2 cut(s)	208, 1129
BsoBI	CYCGRG	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	289, 743
Bsp1407I	TGTACA	1 cut(s)	660
BspACI	CCGC	5 cut(s)	384, 436, 644, 997, 1734
BspANI	GGCC	2 cut(s)	208, 1129
BspCNI	CTCAG	2 cut(s)	494, 1153
BspHI	TCATGA	1 cut(s)	1546
BspLI	GGNNCC	9 cut(s)	320, 382, 575, 576, 598, 638, 1290, 1333, 1539
BspMI	ACCTGC	1 cut(s)	1470
BspT107I	GGYRCC	1 cut(s)	1331
BspTI	CTTAAG	1 cut(s)	1187
BsrDI	GCAATG	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	4 cut(s)	191, 320, 689, 781
BssECI	CCNNGG	3 cut(s)	397, 1082, 1335
BssT1I	CCWWGG	1 cut(s)	1082
Bst2UI	CCWGG	2 cut(s)	399, 1073
Bst4CI	ACNGT	2 cut(s)	986, 1116
Bst6I	CTCTTC	1 cut(s)	1548
BstAFI	CTTAAG	1 cut(s)	1187
BstAPI	GCANNNNNTGC	1 cut(s)	1617
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	4 cut(s)	407, 411, 727, 1618
BstDEI	CTNAG	7 cut(s)	481, 494, 990, 1151, 1161, 1202, 1562
BstF5I	GGATG	4 cut(s)	700, 794, 1019, 1064
BstMAI	GTCTC	1 cut(s)	1434
BstMWI	GCNNNNNNNGC	4 cut(s)	650, 1147, 1232, 1617
BstNI	CCWGG	2 cut(s)	399, 1073
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	397, 1071
BstSFI	CTRYAG	3 cut(s)	1131, 1414, 1584
BstSLI	GKGCMC	2 cut(s)	289, 743
BstV1I	GCAGC	3 cut(s)	319, 356, 1238
BstV2I	GAAGAC	3 cut(s)	817, 1402, 1476
BstX2I	RGATCY	5 cut(s)	318, 380, 1002, 1288, 1537
BstYI	RGATCY	5 cut(s)	318, 380, 1002, 1288, 1537
BsuRI	GGCC	2 cut(s)	208, 1129
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	823
BtsCI	GGATG	4 cut(s)	700, 794, 1019, 1064
BtsI	GCAGTG	1 cut(s)	1474
BtsIMutI	CAGTG	2 cut(s)	991, 1474
BveI	ACCTGC	1 cut(s)	1470
Cac8I	GCNNGC	4 cut(s)	407, 411, 727, 1618
CciI	TCATGA	1 cut(s)	1546
Cfr13I	GGNCC	6 cut(s)	206, 574, 596, 806, 1086, 1355
Csp6I	GTAC	3 cut(s)	661, 873, 1211
CviAII	CATG	7 cut(s)	89, 95, 326, 588, 730, 812, 1547
CviQI	GTAC	3 cut(s)	661, 873, 1211
DdeI	CTNAG	7 cut(s)	481, 494, 990, 1151, 1161, 1202, 1562
Eam1104I	CTCTTC	1 cut(s)	1548
EarI	CTCTTC	1 cut(s)	1548
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	1082
Eco32I	GATATC	4 cut(s)	15, 361, 531, 895
Eco47I	GGWCC	5 cut(s)	574, 596, 806, 1086, 1355
Eco57I	CTGAAG	1 cut(s)	1252
Eco88I	CYCGRG	1 cut(s)	883
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	397, 1071
EcoRV	GATATC	4 cut(s)	15, 361, 531, 895
EcoT14I	CCWWGG	1 cut(s)	1082
ErhI	CCWWGG	1 cut(s)	1082
FaeI	CATG	7 cut(s)	92, 98, 329, 591, 733, 815, 1550
FalI	AAGNNNNNCTT	6 cut(s)	809, 841, 1335, 1367, 1468, 1500
FaqI	GGGAC	2 cut(s)	582, 587
FatI	CATG	7 cut(s)	88, 94, 325, 587, 729, 811, 1546
FauI	CCCGC	1 cut(s)	637
FauNDI	CATATG	1 cut(s)	802
FbaI	TGATCA	1 cut(s)	1576
Fnu4HI	GCNGC	3 cut(s)	333, 370, 1227
FokI	GGATG	4 cut(s)	687, 781, 1026, 1071
Fsp4HI	GCNGC	3 cut(s)	333, 370, 1227
FspBI	CTAG	2 cut(s)	542, 1629
GluI	GCNGC	3 cut(s)	333, 370, 1227
GsuI	CTGGAG	2 cut(s)	420, 1055
HaeIII	GGCC	2 cut(s)	208, 1129
HapII	CCGG	2 cut(s)	426, 755
Hin1II	CATG	7 cut(s)	92, 98, 329, 591, 733, 815, 1550
HincII	GTYRAC	2 cut(s)	313, 790
HindII	GTYRAC	2 cut(s)	313, 790
HindIII	AAGCTT	3 cut(s)	78, 1148, 1567
HinfI	GANTC	6 cut(s)	429, 929, 1025, 1068, 1196, 1419
HpaII	CCGG	2 cut(s)	426, 755
HphI	GGTGA	3 cut(s)	700, 1351, 1670
Hpy166II	GTNNAC	2 cut(s)	313, 790
Hpy188I	TCNGA	2 cut(s)	484, 528
Hpy188III	TCNNGA	7 cut(s)	378, 599, 829, 1051, 1065, 1270, 1547
Hpy8I	GTNNAC	2 cut(s)	313, 790
HpyAV	CCTTC	4 cut(s)	113, 685, 985, 1601
HpyCH4III	ACNGT	2 cut(s)	986, 1116
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	3 cut(s)	1123, 1467, 1620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	650, 1147, 1232, 1617
HpyF3I	CTNAG	7 cut(s)	481, 494, 990, 1151, 1161, 1202, 1562
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	7 cut(s)	92, 98, 329, 591, 733, 815, 1550
KflI	GGGWCCC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	1576
LmnI	GCTCC	2 cut(s)	666, 1722
Lsp1109I	GCAGC	3 cut(s)	319, 356, 1238
MaeI	CTAG	2 cut(s)	542, 1629
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	4 cut(s)	1043, 1219, 1262, 1469
MboII	GAAGA	6 cut(s)	817, 970, 1402, 1414, 1476, 1535
MflI	RGATCY	5 cut(s)	318, 380, 1002, 1288, 1537
MhlI	GDGCHC	2 cut(s)	289, 743
MluCI	AATT	7 cut(s)	29, 225, 867, 1077, 1311, 1438, 1744
MlyI	GAGTC	1 cut(s)	1062
MmeI	TCCRAC	2 cut(s)	560, 1266
MseI	TTAA	6 cut(s)	632, 840, 1020, 1188, 1302, 1490
MslI	CAYNNNNRTG	2 cut(s)	93, 1671
MspCI	CTTAAG	1 cut(s)	1187
MspI	CCGG	2 cut(s)	426, 755
MspR9I	CCNGG	2 cut(s)	399, 1073
MvaI	CCWGG	2 cut(s)	399, 1073
MwoI	GCNNNNNNNGC	4 cut(s)	650, 1147, 1232, 1617
NdeI	CATATG	1 cut(s)	802
NlaIII	CATG	7 cut(s)	92, 98, 329, 591, 733, 815, 1550
NlaIV	GGNNCC	9 cut(s)	320, 382, 575, 576, 598, 638, 1290, 1333, 1539
NmuCI	GTSAC	4 cut(s)	1043, 1219, 1262, 1469
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	1 cut(s)	1546
PfeI	GAWTC	5 cut(s)	429, 929, 1025, 1196, 1419
PflMI	CCANNNNNTGG	3 cut(s)	186, 460, 588
PkrI	GCNGC	3 cut(s)	334, 371, 1228
PleI	GAGTC	1 cut(s)	1062
PpsI	GAGTC	1 cut(s)	1062
PpuMI	RGGWCCY	1 cut(s)	574
PshBI	ATTAAT	2 cut(s)	1020, 1302
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	397, 1071
PspGI	CCWGG	2 cut(s)	397, 1071
PspN4I	GGNNCC	9 cut(s)	320, 382, 575, 576, 598, 638, 1290, 1333, 1539
PspPI	GGNCC	6 cut(s)	206, 574, 596, 806, 1086, 1355
PspPPI	RGGWCCY	1 cut(s)	574
PsuI	RGATCY	5 cut(s)	318, 380, 1002, 1288, 1537
RsaI	GTAC	3 cut(s)	662, 874, 1212
RsaNI	GTAC	3 cut(s)	661, 873, 1211
RseI	CAYNNNNRTG	2 cut(s)	93, 1671
SaqAI	TTAA	6 cut(s)	632, 840, 1020, 1188, 1302, 1490
SatI	GCNGC	3 cut(s)	333, 370, 1227
Sau96I	GGNCC	6 cut(s)	206, 574, 596, 806, 1086, 1355
ScaI	AGTACT	1 cut(s)	1212
SchI	GAGTC	1 cut(s)	1062
ScrFI	CCNGG	2 cut(s)	399, 1073
SduI	GDGCHC	2 cut(s)	289, 743
SfcI	CTRYAG	3 cut(s)	1131, 1414, 1584
SinI	GGWCC	5 cut(s)	574, 596, 806, 1086, 1355
SmiMI	CAYNNNNRTG	2 cut(s)	93, 1671
SmlI	CTYRAG	1 cut(s)	1187
SmoI	CTYRAG	1 cut(s)	1187
Sse9I	AATT	7 cut(s)	29, 225, 867, 1077, 1311, 1438, 1744
SsiI	CCGC	5 cut(s)	384, 436, 644, 997, 1734
SspMI	CTAG	2 cut(s)	542, 1629
StyD4I	CCNGG	2 cut(s)	397, 1071
StyI	CCWWGG	1 cut(s)	1082
TaaI	ACNGT	2 cut(s)	986, 1116
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	4 cut(s)	293, 357, 850, 981
TasI	AATT	7 cut(s)	29, 225, 867, 1077, 1311, 1438, 1744
TatI	WGTACW	2 cut(s)	660, 1210
TfiI	GAWTC	5 cut(s)	429, 929, 1025, 1196, 1419
Tru1I	TTAA	6 cut(s)	632, 840, 1020, 1188, 1302, 1490
Tru9I	TTAA	6 cut(s)	632, 840, 1020, 1188, 1302, 1490
TscAI	CASTG	2 cut(s)	991, 1474
TseFI	GTSAC	4 cut(s)	1043, 1219, 1262, 1469
TseI	GCWGC	3 cut(s)	332, 369, 1226
Tsp45I	GTSAC	4 cut(s)	1043, 1219, 1262, 1469
TspDTI	ATGAA	4 cut(s)	342, 698, 1038, 1535
TspRI	CASTG	2 cut(s)	991, 1474
Van91I	CCANNNNNTGG	3 cut(s)	186, 460, 588
Vha464I	CTTAAG	1 cut(s)	1187
VpaK11BI	GGWCC	5 cut(s)	574, 596, 806, 1086, 1355
VspI	ATTAAT	2 cut(s)	1020, 1302
XapI	RAATTY	2 cut(s)	225, 1311
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	2 cut(s)	542, 1629
ZrmI	AGTACT	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.