Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Reverse (-)

2003627 .. 2007212

Gene Structure 3586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTCAAGAAGGTCAAAACATCGATGAGCCGGTTGTTATTGGAGAGGAAAAAGGTTCTGTAAGATTGACTACTCTTAACCGCCCTCGTCAGCTGAATGTCATCTCTCCGGAAGTGGTCTTTAAGCTTGCAGAATATCTTGAATTGTGGGAGAAGGATGACCAAACAAAGCTTATATTGATCAAGGGTACAGGTAGAGCTTTCTCCGCCGGTGGTGATCTAAAGGTGTTTTATCACGGACAGGAATCAAAGGATTCTTGCCTTGAGGTTGTTTACCGGATGTACTGGCTGTGTTATCATATCCACACATACAAGAAGACGCAGGTGTCTCTGGTTAATGGAATATCGATGGGTGGAGGTGCAGCATTGATGGTCCCTATGAAGTTTTCAGTTGTGACAGAGAAAACTGTTTTTGCGACTCCAGAAGCAAGTTTCGGGTTTCACACTGATTGCGGGTTCTCCTACATCCATTCACGTCTTCCTGGTCATTTAGGAGAGTTCTTGGCTTTAACTGGGGCAAGATTGAACGGCAAAGAACTTGTAGCAATTGGAATGGCAACACATTTTGTACCTTCTGGTAAATTGATGGATCTGGAGGCACGGCTTGTGAGTTTAGACTCAGGAGATGCGGATGTAGTCCAATCCACAATTGAAGAGTTCTCCGAGAAAGTCAACCTTGACAAAGACAGCATCCTTAACAAGCAGTCGGTAATCAATGAGTGTTTCTCAAAAGAAAGTGTGAAGCAGATCATACAAGCATTTGAAGCTGAAGCAAGCAAAGACGGGAATGAATGGATAACTCCAGTCATCAAAGGTCTAAAGCGATCGTCACCCACAGGGTTGAAGATAGTACTACAATCGATCCGTGAAGGTAGAAAACAAACGCTGAGTGATTGCCTGAAGAAAGAGTTTCGGCTCACCTTGAATATCTTGAGGAAAACCATATCCCCTGATATGTATGAGGGTATAAGGGCTCTGACCATAGACAAAGACAATTCTCCAAAGTGGAATCCAGCGACATTAGATGAGGTGGATGATGAGAAAATCAACTCGGTGTTTAAGCTCTTTGAGGATGATGATATTGAACTACAAATCCCTGAAACAGAAGAAAACAGGTGGGGAGGCAAATACGAGACTTCAGGCTACGCATCTGTACGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

387

Amino Acids

43.26

Weight (kDa)

5.4

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	17 - 254	5.2e-29	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	22 - 353	8.2e-115	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
AasI	GACNNNNNNGTC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	313
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	4 cut(s)	82, 207, 453, 629
AclWI	GGATC	2 cut(s)	597, 856
AcuI	CTGAAG	3 cut(s)	789, 920, 1122
AfaI	GTAC	5 cut(s)	190, 284, 570, 852, 1155
AgsI	TTSAA	7 cut(s)	143, 526, 653, 764, 844, 925, 1085
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	1077, 1109
AluBI	AGCT	6 cut(s)	94, 127, 172, 200, 767, 1063
AluI	AGCT	6 cut(s)	94, 127, 172, 200, 767, 1063
Alw26I	GTCTC	2 cut(s)	333, 1127
AlwI	GGATC	2 cut(s)	597, 856
Aor13HI	TCCGGA	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	227, 822, 910
AvaII	GGWCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	976
BbsI	GAAGAC	2 cut(s)	323, 470
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	343, 364, 580
BceAI	ACGGC	2 cut(s)	544, 617
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	333, 1127
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmcAI	AGTACT	1 cut(s)	852
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	616, 699, 1157
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	323, 470
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	3 cut(s)	405, 614, 786
BpuEI	CTTGAG	2 cut(s)	284, 952
Bsa29I	ATCGAT	3 cut(s)	24, 347, 860
BsaWI	WCCGGW	2 cut(s)	109, 276
Bse118I	RCCGGY	2 cut(s)	31, 209
Bse1I	ACTGG	3 cut(s)	290, 517, 803
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	3 cut(s)	24, 347, 860
BseGI	GGATG	7 cut(s)	163, 285, 465, 637, 690, 1039, 1078
BseMII	CTCAG	2 cut(s)	633, 878
BseNI	ACTGG	3 cut(s)	290, 517, 803
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	827
BshVI	ATCGAT	3 cut(s)	24, 347, 860
BsiEI	CGRYCG	1 cut(s)	827
BsiSI	CCGG	4 cut(s)	32, 110, 210, 277
BslFI	GGGAC	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	333, 1127
BsmFI	GGGAC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
BspACI	CCGC	4 cut(s)	82, 207, 453, 629
BspCNI	CTCAG	2 cut(s)	632, 879
BspDI	ATCGAT	3 cut(s)	24, 347, 860
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	597, 856
BsrFI	RCCGGY	2 cut(s)	31, 209
BsrI	ACTGG	3 cut(s)	290, 517, 803
BssAI	RCCGGY	2 cut(s)	31, 209
BssMI	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	129, 775
BstDEI	CTNAG	2 cut(s)	619, 887
BstF5I	GGATG	7 cut(s)	163, 285, 465, 637, 690, 1039, 1078
BstKTI	GATC	6 cut(s)	183, 220, 592, 750, 827, 864
BstMAI	GTCTC	2 cut(s)	333, 1127
BstMBI	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
BstMCI	CGRYCG	1 cut(s)	827
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 764
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	2 cut(s)	323, 470
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	3 cut(s)	24, 347, 860
BsuTUI	ATCGAT	3 cut(s)	24, 347, 860
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	7 cut(s)	163, 285, 465, 637, 690, 1039, 1078
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	129, 775
Cfr10I	RCCGGY	2 cut(s)	31, 209
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	3 cut(s)	24, 347, 860
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	5 cut(s)	189, 283, 569, 851, 1154
CviQI	GTAC	5 cut(s)	189, 283, 569, 851, 1154
DdeI	CTNAG	2 cut(s)	619, 887
DpnI	GATC	6 cut(s)	182, 219, 591, 749, 826, 863
DpnII	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	789, 920, 1122
EcoRII	CCWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	976
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	1 cut(s)	359
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	7 cut(s)	170, 292, 452, 644, 677, 1046, 1085
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	3 cut(s)	405, 614, 786
HapII	CCGG	4 cut(s)	32, 110, 210, 277
HgaI	GACGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	2 cut(s)	125, 170
HinfI	GANTC	5 cut(s)	245, 254, 418, 617, 1009
HpaII	CCGG	4 cut(s)	32, 110, 210, 277
HphI	GGTGA	3 cut(s)	227, 822, 910
Hpy166II	GTNNAC	2 cut(s)	274, 673
Hpy188I	TCNGA	2 cut(s)	664, 978
Hpy188III	TCNNGA	7 cut(s)	8, 110, 140, 422, 593, 621, 931
Hpy8I	GTNNAC	2 cut(s)	274, 673
HpyAV	CCTTC	4 cut(s)	5, 148, 582, 863
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	131, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 764
HpyF3I	CTNAG	2 cut(s)	619, 887
HpySE526I	ACGT	1 cut(s)	475
Kpn2I	TCCGGA	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	3 cut(s)	616, 699, 1157
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	2 cut(s)	394, 828
MalI	GATC	6 cut(s)	182, 219, 591, 749, 826, 863
MboI	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
MboII	GAAGA	6 cut(s)	328, 470, 665, 856, 913, 1118
MfeI	CAATTG	2 cut(s)	546, 648
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	5 cut(s)	143, 546, 581, 648, 994
MlyI	GAGTC	2 cut(s)	412, 611
MroI	TCCGGA	1 cut(s)	109
MseI	TTAA	6 cut(s)	78, 123, 336, 509, 696, 1059
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	4 cut(s)	32, 110, 210, 277
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	2 cut(s)	546, 648
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	206, 764
NdeII	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	2 cut(s)	394, 828
PaqCI	CACCTGC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	245, 254, 1009
PkrI	GCNGC	1 cut(s)	364
Ple19I	CGATCG	1 cut(s)	827
PleI	GAGTC	2 cut(s)	412, 611
PpsI	GAGTC	2 cut(s)	412, 611
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	589
PvuI	CGATCG	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	5 cut(s)	190, 284, 570, 852, 1155
RsaNI	GTAC	5 cut(s)	189, 283, 569, 851, 1154
SaqAI	TTAA	6 cut(s)	78, 123, 336, 509, 696, 1059
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	6 cut(s)	180, 217, 589, 747, 824, 861
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	852
SchI	GAGTC	2 cut(s)	412, 611
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	616, 699, 1157
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	3 cut(s)	6, 263, 931
SmoI	CTYRAG	3 cut(s)	6, 263, 931
Sse9I	AATT	5 cut(s)	143, 546, 581, 648, 994
SsiI	CCGC	4 cut(s)	82, 207, 453, 629
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	3 cut(s)	24, 347, 860
TasI	AATT	5 cut(s)	143, 546, 581, 648, 994
TatI	WGTACW	2 cut(s)	282, 850
TfiI	GAWTC	3 cut(s)	245, 254, 1009
Tru1I	TTAA	6 cut(s)	78, 123, 336, 509, 696, 1059
Tru9I	TTAA	6 cut(s)	78, 123, 336, 509, 696, 1059
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	394, 828
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	394, 828
TspDTI	ATGAA	2 cut(s)	395, 804
TspGWI	ACGGA	2 cut(s)	252, 854
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	373
ZrmI	AGTACT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.