Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Reverse (-)

19378710 .. 19383872

Gene Structure 5163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G176700.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGACACAAGAAGTTGTAAATTCAGATGAGGTTGTTCTTGGAGAAGAAATAGAGCATGTGAGGTTGATCACCTTGAACAGGCCTCGTCATTTGAATGTCATCTCATCAAAAGTGGTTTCTTTGCTAGCAGAATACTTGGAAAAGTGGGAAAAAGATGATAAAGCTGAGCTTGTAATTATCAAGGGATCGGGTCGAGCTTTTTCAGCCGGTGGGGACTTGAAGATGTTCTATGATGGCAGGAACTCAAAGGATTCCTGCCTTGAAGTGGCTTACAGAATGTATTGGCTTGGCTATCACATTCATACTTATAAGAAAACCCAGGTGGCTCTGGTCCATGGAATTTCAATGGGTGGAGGTGCATCTTTAATGGTCCCAATGAAGTTCTCAGTAGTCACAGAAAAAACTGTATTTGCAACTCCGGAAGCTAGTATTGGCTTTCATACTGATTGTGGTTTCTCATATATACTATCCCATCTTCCTGGGCATCTCGGGGAGTTCTTTGCCTTAACAGGAGCAAGACTGAATGGTAAGGAATTGGTTGCAGCTGGATTGGCAACCCATTTTGTCCCTCTTGAGAAATTATCTGATCTAGAGAAGCGTTTGATAAGCTTAAACTCTGGAGATGAGAACGCAGTCAAAGCTGCTATTGAAGAATTTGCAGTGGAAGTCCAGCCTGATGAAGAAAGTGTTTTAAACAAGCAGTCAATAATTGATGAATGCTTCTCCAAAGATACAGTGGCTGAGATTATAAAATCATTTGAAGTAGAGGCAACCAAAGAAGGAAATGGATGGATAAGTCCAGTTCTTAAGGGCTTAAAAAGATCATCCCCTACAGGATTGAGAATAACACTAAGATCGATTCGTGAAGGCAGGAAGCAAACATTGCCTGAAAGTCTAAAGAAGGAATTTAGACTCACAATCAATATACTAAGAGCCATAATATCTGCGGATGTATATGAGGGTATTAGAGCTCTCACTATTGACAAGGATAATGCACCTAAGTGGAACCCACCATCTCTTGACCATGTGGGTGATGAGAAGATAGACCAAGTGTTTCAGCCGTTTGAAGAAGATTTGGAGCTCCAAATTCCTGAAAAGGAAGAACACAGGTGGGATGGCAAATATGAGAATTCGCCTTATGCATCTTTCAAGGTGACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

388

Amino Acids

43.32

Weight (kDa)

5.44

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	309, 749
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	6 cut(s)	19, 339, 653, 905, 1086, 1129
AfiI	CCNNNNNNNGG	2 cut(s)	78, 265
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	9 cut(s)	76, 94, 220, 263, 345, 650, 761, 1067, 1150
AjnI	CCWGG	2 cut(s)	318, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AleI	CACNNNNGTG	1 cut(s)	1000
AluBI	AGCT	9 cut(s)	164, 169, 197, 425, 545, 609, 641, 971, 1081
AluI	AGCT	9 cut(s)	164, 169, 197, 425, 545, 609, 641, 971, 1081
Alw21I	GWGCWC	2 cut(s)	973, 1083
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	542, 641
ApoI	RAATTY	6 cut(s)	19, 339, 653, 905, 1086, 1129
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	331, 370
AsuHPI	GGTGA	2 cut(s)	61, 1043
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	331, 370
BanII	GRGCYC	2 cut(s)	973, 1083
Bbv12I	GWGCWC	2 cut(s)	973, 1083
BbvI	GCAGC	2 cut(s)	554, 628
BccI	CCATC	5 cut(s)	227, 480, 783, 1021, 1109
BceAI	ACGGC	1 cut(s)	1045
BciT130I	CCWGG	2 cut(s)	320, 480
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	3 cut(s)	125, 426, 590
BfmI	CTRYAG	1 cut(s)	831
BfrI	CTTAAG	1 cut(s)	806
BisI	GCNGC	2 cut(s)	543, 642
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	544, 643
Bme1390I	CCNGG	2 cut(s)	320, 480
Bme18I	GGWCC	2 cut(s)	331, 370
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	331, 370
BmiI	GGNNCC	2 cut(s)	372, 1007
BmrFI	CCNGG	2 cut(s)	320, 480
BmsI	GCATC	3 cut(s)	368, 493, 1151
BmtI	GCTAGC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	318, 334, 479
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 265
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	881
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	320, 480
BseCI	ATCGAT	1 cut(s)	857
BseDI	CCNNGG	3 cut(s)	318, 334, 479
BseGI	GGATG	4 cut(s)	794, 824, 955, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	78, 265
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	3 cut(s)	156, 399, 732
BseNI	ACTGG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	554, 628
BshFI	GGCC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	857
BsiHKAI	GWGCWC	2 cut(s)	973, 1083
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	207, 419
BslFI	GGGAC	3 cut(s)	227, 356, 551
BslI	CCNNNNNNNGG	2 cut(s)	78, 265
BsmFI	GGGAC	3 cut(s)	227, 356, 551
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	973, 1083
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	66, 185, 586, 821, 854
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	157, 398, 733
BspDI	ATCGAT	1 cut(s)	857
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	372, 1007
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	881
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	800
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	318, 334, 479
BssMI	GATC	5 cut(s)	66, 185, 586, 821, 854
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	320, 480
Bst4CI	ACNGT	2 cut(s)	406, 736
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	6 cut(s)	165, 385, 741, 851, 929, 999
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	794, 824, 955, 1120
BstKTI	GATC	5 cut(s)	69, 188, 589, 824, 857
BstMBI	GATC	5 cut(s)	66, 185, 586, 821, 854
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
BstNI	CCWGG	2 cut(s)	320, 480
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	318, 478
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	554, 628
BstXI	CCANNNNNNTGG	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	857
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	794, 824, 955, 1120
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	666, 741
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	740
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	331, 370
ClaI	ATCGAT	1 cut(s)	857
CviAII	CATG	3 cut(s)	56, 335, 1025
DdeI	CTNAG	6 cut(s)	165, 385, 741, 851, 929, 999
DpnI	GATC	5 cut(s)	68, 187, 588, 823, 856
DpnII	GATC	5 cut(s)	66, 185, 586, 821, 854
DraI	TTTAAA	1 cut(s)	693
Ecl136II	GAGCTC	2 cut(s)	971, 1081
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	2 cut(s)	973, 1083
Eco47I	GGWCC	2 cut(s)	331, 370
Eco53kI	GAGCTC	2 cut(s)	971, 1081
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	971, 1081
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	318, 478
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	1144
EcoT38I	GRGCYC	2 cut(s)	973, 1083
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	59, 338, 1028
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	3 cut(s)	227, 356, 551
FatI	CATG	3 cut(s)	55, 334, 1024
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	543, 642
FokI	GGATG	4 cut(s)	801, 811, 962, 1127
FriOI	GRGCYC	2 cut(s)	973, 1083
Fsp4HI	GCNGC	2 cut(s)	543, 642
FspBI	CTAG	3 cut(s)	125, 426, 590
GluI	GCNGC	2 cut(s)	543, 642
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	207, 419
Hin1II	CATG	3 cut(s)	59, 338, 1028
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	3 cut(s)	251, 859, 912
HpaII	CCGG	2 cut(s)	207, 419
HphI	GGTGA	2 cut(s)	61, 1043
Hpy188I	TCNGA	2 cut(s)	25, 586
Hpy188III	TCNNGA	7 cut(s)	419, 572, 590, 618, 863, 1019, 1091
HpyAV	CCTTC	3 cut(s)	773, 860, 895
HpyCH4III	ACNGT	2 cut(s)	406, 736
HpyCH4V	TGCA	6 cut(s)	359, 413, 542, 659, 995, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
HpyF3I	CTNAG	6 cut(s)	165, 385, 741, 851, 929, 999
Hsp92II	CATG	3 cut(s)	59, 338, 1028
Kpn2I	TCCGGA	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	66, 185, 586, 821, 854
LmnI	GCTCC	3 cut(s)	512, 1078, 1086
Lsp1109I	GCAGC	2 cut(s)	554, 628
LweI	GCATC	3 cut(s)	368, 493, 1151
MaeI	CTAG	3 cut(s)	125, 426, 590
MaeIII	GTNAC	2 cut(s)	391, 1153
MalI	GATC	5 cut(s)	68, 187, 588, 823, 856
MboI	GATC	5 cut(s)	66, 185, 586, 821, 854
MboII	GAAGA	9 cut(s)	56, 232, 467, 662, 692, 1051, 1079, 1082, 1112
MhlI	GDGCHC	2 cut(s)	973, 1083
MlyI	GAGTC	1 cut(s)	906
MnlI	CCTC	7 cut(s)	22, 54, 93, 347, 579, 760, 952
Mph1103I	ATGCAT	1 cut(s)	1144
MroI	TCCGGA	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	6 cut(s)	365, 506, 611, 692, 807, 815
MslI	CAYNNNNRTG	3 cut(s)	93, 1000, 1029
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	2 cut(s)	207, 419
MspR9I	CCNGG	2 cut(s)	320, 480
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	320, 480
MwoI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	5 cut(s)	66, 185, 586, 821, 854
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	59, 338, 1028
NlaIV	GGNNCC	2 cut(s)	372, 1007
NmuCI	GTSAC	2 cut(s)	391, 1153
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	251, 859
PkrI	GCNGC	2 cut(s)	544, 643
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PsiI	TTATAA	2 cut(s)	309, 749
Psp124BI	GAGCTC	2 cut(s)	973, 1083
Psp6I	CCWGG	2 cut(s)	318, 478
PspGI	CCWGG	2 cut(s)	318, 478
PspN4I	GGNNCC	2 cut(s)	372, 1007
PspPI	GGNCC	2 cut(s)	331, 370
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	3 cut(s)	93, 1000, 1029
SacI	GAGCTC	2 cut(s)	973, 1083
SaqAI	TTAA	6 cut(s)	365, 506, 611, 692, 807, 815
SatI	GCNGC	2 cut(s)	543, 642
Sau3AI	GATC	5 cut(s)	66, 185, 586, 821, 854
Sau96I	GGNCC	2 cut(s)	331, 370
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	2 cut(s)	320, 480
SduI	GDGCHC	2 cut(s)	973, 1083
SfaNI	GCATC	3 cut(s)	368, 493, 1151
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	331, 370
SmiMI	CAYNNNNRTG	3 cut(s)	93, 1000, 1029
SmlI	CTYRAG	2 cut(s)	572, 806
SmoI	CTYRAG	2 cut(s)	572, 806
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	947
SspMI	CTAG	3 cut(s)	125, 426, 590
SstI	GAGCTC	2 cut(s)	973, 1083
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	318, 478
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	406, 736
TaqI	TCGA	2 cut(s)	193, 857
TfiI	GAWTC	2 cut(s)	251, 859
Tru1I	TTAA	6 cut(s)	365, 506, 611, 692, 807, 815
Tru9I	TTAA	6 cut(s)	365, 506, 611, 692, 807, 815
TscAI	CASTG	2 cut(s)	666, 741
TseFI	GTSAC	2 cut(s)	391, 1153
TseI	GCWGC	2 cut(s)	542, 641
Tsp45I	GTSAC	2 cut(s)	391, 1153
TspDTI	ATGAA	5 cut(s)	290, 392, 428, 693, 729
TspRI	CASTG	2 cut(s)	666, 741
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	331, 370
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	6 cut(s)	19, 339, 653, 905, 1086, 1129
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	3 cut(s)	125, 426, 590
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.