Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Forward (+)

5086382 .. 5089337

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTCAAGAAGTTGTAACTTCTGATGAGGTTATTGTTGGAGAAGAAATAGAGCGGGTGAGGTTGATCACATTGAACAGGCCTCGTCAATTGAATGTCATCTCATCCAAAGTGGTTTCTTTGCTAGCTGAGTACTTGGAAAAGTGGGAAAAAGATGACAATGCTGAGCTTGTAATTATCAAGGGATCAGGCCGAGCTTTTTCAGCTGGCGGGGACTTGAAAATGTTCTATGACGGCAGGAAATCAAAGGATCCCTGCCTTGAAGTTGTTTACAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAAACCCAGGTGGCTTTGGTCCATGGAATTTCAATGGGTGGAGGCGCATCTTTGATGGTCCCAATGAAGTTCTCAGTAGTCACTGAAAAAACTGTTTTTTCCACTCCAGAAGCTAGTATTGGATTTCATACAGATTGCGGTTTCTCATATATGCATTCCCATCTTCCTGGGTATCTCGGGGAGTTTTTGGGCTTAACAGGAGCAAGACTGAATGGTAAGGAACTGGTTGCGGTTGGACTAGCAACCCATTTTGTCCCTCTTGAGAAATTATCCGATCTAGAGAAGTGTTTGATAAGCTTGAACTCCGGAAATGAGAACGCGGTCAAAGCTGCAATTGAAGAATTTTCTGTGGAAGTCAAGCCTGATGAAGAAAGTGTTTTAAACAAGCTGTCAATAATTGACGAGTGCTTCTCCAAATATACAGTGGCTGAGATTATACAATCATTTGAAGCAGAGGCAAAGAAAGAAGGAAATGGATGGATAGGTCCACATCTCAAGGGCTTAAAAAGATCATCCCCTACGGGGTTGACAATAACACTGAGATCGATTCGCGAAGGCAGGAAGCAAACGTTGCCTGAATCTATGAAGAAGGAATTTAGACTCACAATGAATATACTGCGGTCCAAAATTTCTGAGGATGTTTATGAGGGTATTAGAGCTCTCACTATTGACAAGGATAATGCTCCCAAGTGGAACCCGCCGTCTCTTGACAATGTGGTGGATGAGAAACTAGACCTGGTCTTCCAGCCGTTCGAAGAAGATTTGGAGCTTCAGATTAAGGAACAGGAAGAAAACAGGTGGGATGGCAAGTATGAGAATTCAGCTTATGCATCCTTGAAGGTGACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

388

Amino Acids

43.48

Weight (kDa)

5.43

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	2 cut(s)	632, 864
AccIII	TCCGGA	1 cut(s)	617
AciI	CCGC	7 cut(s)	55, 210, 450, 542, 632, 931, 1010
AclI	AACGTT	1 cut(s)	881
AclWI	GGATC	3 cut(s)	193, 245, 258
AcsI	RAATTY	5 cut(s)	339, 653, 905, 939, 1129
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	834
AgsI	TTSAA	9 cut(s)	76, 94, 220, 263, 345, 613, 650, 761, 1150
AjnI	CCWGG	3 cut(s)	318, 478, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	1 cut(s)	1020
AlwI	GGATC	3 cut(s)	193, 245, 258
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	617
AoxI	GGCC	2 cut(s)	80, 190
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	5 cut(s)	339, 653, 905, 939, 1129
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	4 cut(s)	331, 370, 797, 933
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	1065
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	4 cut(s)	331, 370, 797, 933
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	973
BbsI	GAAGAC	1 cut(s)	1045
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	4 cut(s)	361, 480, 783, 1109
BceAI	ACGGC	3 cut(s)	250, 997, 1045
BciT130I	CCWGG	3 cut(s)	320, 480, 1049
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	1020
BfaI	CTAG	5 cut(s)	125, 426, 551, 590, 1043
BisI	GCNGC	1 cut(s)	642
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	3 cut(s)	320, 480, 1049
Bme18I	GGWCC	4 cut(s)	331, 370, 797, 933
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	4 cut(s)	331, 370, 797, 933
BmiI	GGNNCC	3 cut(s)	252, 372, 1007
BmrFI	CCNGG	3 cut(s)	320, 480, 1049
BmsI	GCATC	2 cut(s)	368, 1151
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	1045
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	1065
BpuEI	CTTGAG	2 cut(s)	593, 791
Bsa29I	ATCGAT	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	318, 334, 479
BsaWI	WCCGGW	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse1I	ACTGG	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	617
BseBI	CCWGG	3 cut(s)	320, 480, 1049
BseCI	ATCGAT	1 cut(s)	857
BseDI	CCNNGG	3 cut(s)	318, 334, 479
BseGI	GGATG	7 cut(s)	104, 794, 824, 955, 1039, 1120, 1142
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMII	CTCAG	7 cut(s)	120, 156, 399, 732, 842, 936, 1149
BseNI	ACTGG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	632, 864
BshFI	GGCC	2 cut(s)	82, 192
BshVI	ATCGAT	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	3 cut(s)	227, 356, 551
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmAI	GTCTC	1 cut(s)	1020
BsmBI	CGTCTC	1 cut(s)	1020
BsmFI	GGGAC	3 cut(s)	227, 356, 551
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	82, 192
BsoBI	CYCGRG	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	1065
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp13I	TCCGGA	1 cut(s)	617
Bsp143I	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	334
Bsp68I	TCGCGA	1 cut(s)	864
BspACI	CCGC	7 cut(s)	55, 210, 450, 542, 632, 931, 1010
BspANI	GGCC	2 cut(s)	82, 192
BspCNI	CTCAG	7 cut(s)	121, 157, 398, 733, 843, 937, 1150
BspDI	ATCGAT	1 cut(s)	857
BspEI	TCCGGA	1 cut(s)	617
BspFNI	CGCG	2 cut(s)	632, 864
BspLI	GGNNCC	3 cut(s)	252, 372, 1007
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	3 cut(s)	193, 245, 258
BspT104I	TTCGAA	1 cut(s)	1065
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	318, 334, 479
BssMI	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	3 cut(s)	320, 480, 1049
Bst4CI	ACNGT	2 cut(s)	406, 736
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstBI	TTCGAA	1 cut(s)	1065
BstC8I	GCNNGC	2 cut(s)	126, 208
BstDEI	CTNAG	7 cut(s)	129, 165, 385, 741, 851, 945, 1158
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	7 cut(s)	104, 794, 824, 955, 1039, 1120, 1142
BstFNI	CGCG	2 cut(s)	632, 864
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	6 cut(s)	69, 188, 253, 589, 824, 857
BstMAI	GTCTC	1 cut(s)	1020
BstMBI	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 638, 883
BstNI	CCWGG	3 cut(s)	320, 480, 1049
BstSCI	CCNGG	3 cut(s)	318, 478, 1047
BstUI	CGCG	2 cut(s)	632, 864
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	1045
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	82, 192
BsuTUI	ATCGAT	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	7 cut(s)	104, 794, 824, 955, 1039, 1120, 1142
BtsIMutI	CAGTG	3 cut(s)	393, 741, 848
BtuMI	TCGCGA	1 cut(s)	864
Cac8I	GCNNGC	2 cut(s)	126, 208
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	4 cut(s)	331, 370, 797, 933
ClaI	ATCGAT	1 cut(s)	857
CsiI	ACCWGGT	1 cut(s)	1047
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	7 cut(s)	129, 165, 385, 741, 851, 945, 1158
DpnI	GATC	6 cut(s)	68, 187, 252, 588, 823, 856
DpnII	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
DraI	TTTAAA	1 cut(s)	693
Ecl136II	GAGCTC	1 cut(s)	971
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	973
Eco47I	GGWCC	4 cut(s)	331, 370, 797, 933
Eco53kI	GAGCTC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	3 cut(s)	318, 478, 1047
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	468, 1144
EcoT38I	GRGCYC	1 cut(s)	973
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	1020
FaeI	CATG	1 cut(s)	338
FaqI	GGGAC	3 cut(s)	227, 356, 551
FatI	CATG	1 cut(s)	334
FauI	CCCGC	3 cut(s)	48, 203, 1017
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	7 cut(s)	91, 801, 811, 962, 1046, 1127, 1129
FriOI	GRGCYC	1 cut(s)	973
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	5 cut(s)	125, 426, 551, 590, 1043
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	82, 192
HapII	CCGG	1 cut(s)	618
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	3 cut(s)	859, 890, 912
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	271, 800, 840
Hpy188I	TCNGA	4 cut(s)	25, 586, 946, 1086
Hpy188III	TCNNGA	7 cut(s)	8, 419, 572, 590, 618, 863, 1019
Hpy8I	GTNNAC	3 cut(s)	271, 800, 840
HpyAV	CCTTC	4 cut(s)	773, 860, 895, 1144
HpyCH4III	ACNGT	2 cut(s)	406, 736
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	3 cut(s)	466, 644, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 638, 883
HpyF3I	CTNAG	7 cut(s)	129, 165, 385, 741, 851, 945, 1158
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	1 cut(s)	357
Kpn2I	TCCGGA	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
LmnI	GCTCC	3 cut(s)	512, 1000, 1078
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	2 cut(s)	368, 1151
MabI	ACCWGGT	1 cut(s)	1047
MaeI	CTAG	5 cut(s)	125, 426, 551, 590, 1043
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	3 cut(s)	16, 391, 1153
MalI	GATC	6 cut(s)	68, 187, 252, 588, 823, 856
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
MboII	GAAGA	9 cut(s)	56, 467, 662, 692, 910, 1045, 1079, 1082, 1112
MfeI	CAATTG	2 cut(s)	89, 645
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	973
MlyI	GAGTC	1 cut(s)	906
MmeI	TCCRAC	2 cut(s)	19, 526
MnlI	CCTC	8 cut(s)	22, 54, 93, 347, 579, 760, 940, 952
Mph1103I	ATGCAT	2 cut(s)	468, 1144
MroI	TCCGGA	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	4 cut(s)	506, 692, 815, 1089
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	3 cut(s)	320, 480, 1049
MunI	CAATTG	2 cut(s)	89, 645
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	3 cut(s)	320, 480, 1049
MvnI	CGCG	2 cut(s)	632, 864
MwoI	GCNNNNNNNGC	3 cut(s)	203, 638, 883
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	3 cut(s)	252, 372, 1007
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	391, 1153
NruI	TCGCGA	1 cut(s)	864
NsiI	ATGCAT	2 cut(s)	468, 1144
NspV	TTCGAA	1 cut(s)	1065
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	859, 890
PflFI	GACNNNGTC	1 cut(s)	1049
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	973
Psp1406I	AACGTT	1 cut(s)	881
Psp6I	CCWGG	3 cut(s)	318, 478, 1047
PspGI	CCWGG	3 cut(s)	318, 478, 1047
PspN4I	GGNNCC	3 cut(s)	252, 372, 1007
PspPI	GGNCC	4 cut(s)	331, 370, 797, 933
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	1049
PvuII	CAGCTG	1 cut(s)	206
RruI	TCGCGA	1 cut(s)	864
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	973
SaqAI	TTAA	4 cut(s)	506, 692, 815, 1089
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	6 cut(s)	66, 185, 250, 586, 821, 854
Sau96I	GGNCC	4 cut(s)	331, 370, 797, 933
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	3 cut(s)	320, 480, 1049
SduI	GDGCHC	1 cut(s)	973
SexAI	ACCWGGT	1 cut(s)	1047
SfaNI	GCATC	2 cut(s)	368, 1151
SfuI	TTCGAA	1 cut(s)	1065
SinI	GGWCC	4 cut(s)	331, 370, 797, 933
SmlI	CTYRAG	3 cut(s)	6, 572, 806
SmoI	CTYRAG	3 cut(s)	6, 572, 806
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	7 cut(s)	55, 210, 450, 542, 632, 931, 1010
SspMI	CTAG	5 cut(s)	125, 426, 551, 590, 1043
SstI	GAGCTC	1 cut(s)	973
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	3 cut(s)	318, 478, 1047
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	406, 736
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	2 cut(s)	857, 1065
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	859, 890
Tru1I	TTAA	4 cut(s)	506, 692, 815, 1089
Tru9I	TTAA	4 cut(s)	506, 692, 815, 1089
TscAI	CASTG	3 cut(s)	400, 741, 855
TseFI	GTSAC	2 cut(s)	391, 1153
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	2 cut(s)	391, 1153
TspDTI	ATGAA	6 cut(s)	290, 392, 428, 693, 911, 935
TspRI	CASTG	3 cut(s)	400, 741, 855
Tth111I	GACNNNGTC	1 cut(s)	1049
VpaK11BI	GGWCC	4 cut(s)	331, 370, 797, 933
XapI	RAATTY	5 cut(s)	339, 653, 905, 939, 1129
XbaI	TCTAGA	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	5 cut(s)	125, 426, 551, 590, 1043
ZrmI	AGTACT	1 cut(s)	134
Zsp2I	ATGCAT	2 cut(s)	468, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.