MD09G1149500.v1.1

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
11742780 .. 11746728
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1149500.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGTGGTGGTGGGTAGATATTAGACGCATTTGCTCGCTTTCTCTCTACCAAACCAAAACGTATGCTCTCTCTCTACCAAACCAAATCATATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCAGACCAGTTACTTGGGATGCTATCAACAACAACACATTAATAACCCCATCACCTTCTCTTCACAACCCAACTTTCCTCTTTGCAACTTCTTCTTCTCCTGATAACGAAGTTGTAACTTCTGATGAGGTTCTTGTTGGAGAAGAAATAGAGCGGGTGAGGTTGATCACACTGAACAGGCCTCGTCAATTGAATGTCATCTCATCCAAAGTGGTTTCTTTGCTAGCTGAGTACTTGGAAAAGTGGGAAAAAGATGACAATGCTGAGCTTGTAATTATCAAGGGATCAGGCCGAGCTTTTTCAGCTGGCGGGGACTTGAAAATGTTCTATGACGGCAGGAAATCAAAGGATTCCTGCCTTGAAGTTGTTTACAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAAACACAGGTGGCTCTGGTCCACGGAATTTCAATGGGTGGAGGCGCATCTTTGATGGTCCCAATGAAGTTCTCAGTAGTCACTGAAAAAACTGTTTTTTCCACTCCAGAAGCTAGTATTGGATTTCATACAGATTGCGGTTTCTCATATATGCATTCCCATCTTCCTGGGTTTCTCGGGGAGTTTTTGGGCTTAACAGGAGCAAGACTGAATGGTAAGGAACTGGTTGCGGTTGGACTGGCAACCCATTTTGTCCCTCTTGAGAAATTATCCGATCTAGAGAAGCGTTTGATAAGTTTGAACTCCGGAAATGAGAACGCGGTCAAAGCTGCAATTGAAGAATTTTCTGTGGAAGTCAAGCCTGATGAAGAAAGTGTTTTAAACAAGCAGTCAATAATTGACGAGTGCTTCTCCAAAGATACAGTGGCTGAGATTATACAATCATTTGAAGTAGAGGCAAAGAAAGAAGGAAATGGATGGATAGGTCCACATCTCAAGGGCTTAAAAAGATCATCCCCTACGGGATTGAGAATAACACTGAGATCGATTCGAGAAGGCAGGAAGCAAACGTTGCCTGAATCTCTGAAGAAGGAATTTAGACTCACAATAAATATACTGCGGTCCAAAATTTCTGAGGATGTTTATGAGGGTATTAGAGCTCTCACTATTGACAAGGATAATGCTCCCAAGTGGAACCCGCCGTCTCTTGACAATGTGGTGGATAAGAAACTAGACCTGGTCTTCCAGCCGTTCGAAGAAGATTTGGAGCTCCAGATTAAGGAACAGGAAGAAAACAGGTGGGATGGCAAGTATGAGAATTCAGCTTATGCATCCCTGAAGGTGACCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.7

Weight (kDa)

5.95

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 91 - 326 2.6e-29 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 93 - 425 8.2e-112 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 851
AccIII TCCGGA 1 cut(s) 836
AciI CCGC 7 cut(s) 274, 429, 669, 761, 851, 1150, 1229
AclI AACGTT 1 cut(s) 1100
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 5 cut(s) 558, 872, 1124, 1158, 1348
AcuI CTGAAG 1 cut(s) 1136
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 1309
AgsI TTSAA 7 cut(s) 313, 439, 482, 564, 832, 869, 980
AjnI CCWGG 2 cut(s) 697, 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 9 cut(s) 347, 388, 416, 425, 644, 860, 1190, 1300, 1355
AluI AGCT 9 cut(s) 347, 388, 416, 425, 644, 860, 1190, 1300, 1355
Alw21I GWGCWC 2 cut(s) 1192, 1302
Alw26I GTCTC 1 cut(s) 1239
AlwI GGATC 1 cut(s) 412
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 836
AoxI GGCC 2 cut(s) 299, 409
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 5 cut(s) 558, 872, 1124, 1158, 1348
AseI ATTAAT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 4 cut(s) 550, 589, 1016, 1152
AsuC2I CCSGG 1 cut(s) 1378
AsuHPI GGTGA 2 cut(s) 165, 289
AsuII TTCGAA 1 cut(s) 1284
AsuNHI GCTAGC 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 4 cut(s) 550, 589, 1016, 1152
BanII GRGCYC 2 cut(s) 1192, 1302
BbsI GAAGAC 1 cut(s) 1264
Bbv12I GWGCWC 2 cut(s) 1192, 1302
BbvI GCAGC 1 cut(s) 847
BccI CCATC 5 cut(s) 178, 580, 699, 1002, 1328
BceAI ACGGC 3 cut(s) 469, 1216, 1264
BciT130I CCWGG 2 cut(s) 699, 1268
BclI TGATCA 1 cut(s) 285
BcnI CCSGG 1 cut(s) 1378
BcoDI GTCTC 1 cut(s) 1239
BfaI CTAG 4 cut(s) 344, 645, 809, 1262
BisI GCNGC 1 cut(s) 861
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 862
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 699, 1268, 1378
Bme18I GGWCC 4 cut(s) 550, 589, 1016, 1152
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 4 cut(s) 550, 589, 1016, 1152
BmiI GGNNCC 2 cut(s) 591, 1226
BmrFI CCNGG 3 cut(s) 699, 1268, 1378
BmsI GCATC 3 cut(s) 130, 587, 1370
BmtI GCTAGC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 1264
BplI GAGNNNNNCTC 2 cut(s) 926, 958
BpmI CTGGAG 2 cut(s) 621, 1286
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 1284
BpuEI CTTGAG 2 cut(s) 812, 1010
BpuMI CCSGG 1 cut(s) 1378
Bsa29I ATCGAT 1 cut(s) 1076
BsaJI CCNNGG 2 cut(s) 553, 698
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 1309
Bse1I ACTGG 3 cut(s) 128, 759, 774
BseAI TCCGGA 1 cut(s) 836
BseBI CCWGG 2 cut(s) 699, 1268
BseCI ATCGAT 1 cut(s) 1076
BseDI CCNNGG 2 cut(s) 553, 698
BseGI GGATG 7 cut(s) 145, 323, 1013, 1043, 1174, 1339, 1361
BseLI CCNNNNNNNGG 1 cut(s) 1309
BseMII CTCAG 6 cut(s) 339, 375, 618, 951, 1061, 1155
BseNI ACTGG 3 cut(s) 128, 759, 774
BseXI GCAGC 1 cut(s) 847
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 2 cut(s) 301, 411
BshVI ATCGAT 1 cut(s) 1076
BsiHKAI GWGCWC 2 cut(s) 1192, 1302
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 2 cut(s) 837, 1377
BslFI GGGAC 3 cut(s) 446, 575, 770
BslI CCNNNNNNNGG 1 cut(s) 1309
BsmAI GTCTC 1 cut(s) 1239
BsmBI CGTCTC 1 cut(s) 1239
BsmFI GGGAC 3 cut(s) 446, 575, 770
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 2 cut(s) 301, 411
BsoBI CYCGRG 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 1284
Bsp1286I GDGCHC 2 cut(s) 1192, 1302
Bsp13I TCCGGA 1 cut(s) 836
Bsp143I GATC 5 cut(s) 285, 404, 805, 1040, 1073
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 7 cut(s) 274, 429, 669, 761, 851, 1150, 1229
BspANI GGCC 2 cut(s) 301, 411
BspCNI CTCAG 6 cut(s) 340, 376, 617, 952, 1062, 1156
BspDI ATCGAT 1 cut(s) 1076
BspEI TCCGGA 1 cut(s) 836
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 2 cut(s) 591, 1226
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 1284
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 3 cut(s) 128, 759, 774
BssECI CCNNGG 2 cut(s) 553, 698
BssMI GATC 5 cut(s) 285, 404, 805, 1040, 1073
Bst2UI CCWGG 2 cut(s) 699, 1268
Bst4CI ACNGT 2 cut(s) 625, 955
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 1102
BstBI TTCGAA 1 cut(s) 1284
BstC8I GCNNGC 3 cut(s) 35, 345, 427
BstDEI CTNAG 6 cut(s) 348, 384, 604, 960, 1070, 1164
BstDSI CCRYGG 1 cut(s) 553
BstEII GGTNACC 1 cut(s) 1372
BstF5I GGATG 7 cut(s) 145, 323, 1013, 1043, 1174, 1339, 1361
BstFNI CGCG 1 cut(s) 851
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 5 cut(s) 288, 407, 808, 1043, 1076
BstMAI GTCTC 1 cut(s) 1239
BstMBI GATC 5 cut(s) 285, 404, 805, 1040, 1073
BstMWI GCNNNNNNNGC 3 cut(s) 422, 857, 1102
BstNI CCWGG 2 cut(s) 699, 1268
BstPI GGTNACC 1 cut(s) 1372
BstSCI CCNGG 3 cut(s) 697, 1266, 1376
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 1 cut(s) 847
BstV2I GAAGAC 1 cut(s) 1264
BstXI CCANNNNNNTGG 2 cut(s) 135, 698
Bsu15I ATCGAT 1 cut(s) 1076
BsuRI GGCC 2 cut(s) 301, 411
BsuTUI ATCGAT 1 cut(s) 1076
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 7 cut(s) 145, 323, 1013, 1043, 1174, 1339, 1361
BtsIMutI CAGTG 4 cut(s) 290, 612, 960, 1067
Cac8I GCNNGC 3 cut(s) 35, 345, 427
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 1 cut(s) 578
Cfr13I GGNCC 4 cut(s) 550, 589, 1016, 1152
ClaI ATCGAT 1 cut(s) 1076
CseI GACGC 1 cut(s) 33
CsiI ACCWGGT 1 cut(s) 1266
Csp6I GTAC 1 cut(s) 352
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 6 cut(s) 348, 384, 604, 960, 1070, 1164
DpnI GATC 5 cut(s) 287, 406, 807, 1042, 1075
DpnII GATC 5 cut(s) 285, 404, 805, 1040, 1073
DraI TTTAAA 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 2 cut(s) 1190, 1300
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 1192, 1302
Eco47I GGWCC 4 cut(s) 550, 589, 1016, 1152
Eco53kI GAGCTC 2 cut(s) 1190, 1300
Eco57I CTGAAG 1 cut(s) 1136
Eco88I CYCGRG 1 cut(s) 707
Eco91I GGTNACC 1 cut(s) 1372
EcoICRI GAGCTC 2 cut(s) 1190, 1300
EcoO65I GGTNACC 1 cut(s) 1372
EcoRI GAATTC 1 cut(s) 1348
EcoRII CCWGG 2 cut(s) 697, 1266
EcoT22I ATGCAT 2 cut(s) 687, 1363
EcoT38I GRGCYC 2 cut(s) 1192, 1302
Esp3I CGTCTC 1 cut(s) 1239
FaqI GGGAC 3 cut(s) 446, 575, 770
FauI CCCGC 3 cut(s) 267, 422, 1236
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 7 cut(s) 152, 310, 1020, 1030, 1181, 1346, 1348
FriOI GRGCYC 2 cut(s) 1192, 1302
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 4 cut(s) 344, 645, 809, 1262
GlaI GCGC 1 cut(s) 577
GluI GCNGC 1 cut(s) 861
GsuI CTGGAG 2 cut(s) 621, 1286
HaeIII GGCC 2 cut(s) 301, 411
HapII CCGG 2 cut(s) 837, 1377
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 578
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HinfI GANTC 4 cut(s) 470, 1078, 1109, 1131
HpaII CCGG 2 cut(s) 837, 1377
HphI GGTGA 2 cut(s) 165, 289
Hpy166II GTNNAC 3 cut(s) 490, 553, 1019
Hpy188I TCNGA 4 cut(s) 244, 805, 1116, 1165
Hpy188III TCNNGA 8 cut(s) 221, 638, 791, 809, 837, 1082, 1238, 1303
Hpy8I GTNNAC 3 cut(s) 490, 553, 1019
HpyAV CCTTC 5 cut(s) 186, 992, 1079, 1114, 1363
HpyCH4III ACNGT 2 cut(s) 625, 955
HpyCH4IV ACGT 2 cut(s) 59, 1100
HpyCH4V TGCA 4 cut(s) 206, 685, 863, 1361
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 857, 1102
HpyF3I CTNAG 6 cut(s) 348, 384, 604, 960, 1070, 1164
HpySE526I ACGT 2 cut(s) 59, 1100
HspAI GCGC 1 cut(s) 576
Kpn2I TCCGGA 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 5 cut(s) 285, 404, 805, 1040, 1073
LmnI GCTCC 4 cut(s) 731, 1219, 1297, 1305
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 3 cut(s) 130, 587, 1370
MabI ACCWGGT 1 cut(s) 1266
MaeI CTAG 4 cut(s) 344, 645, 809, 1262
MaeII ACGT 2 cut(s) 59, 1100
MaeIII GTNAC 4 cut(s) 130, 235, 610, 1372
MalI GATC 5 cut(s) 287, 406, 807, 1042, 1075
MbiI CCGCTC 1 cut(s) 274
MboI GATC 5 cut(s) 285, 404, 805, 1040, 1073
MfeI CAATTG 2 cut(s) 308, 864
MhlI GDGCHC 2 cut(s) 1192, 1302
MlyI GAGTC 1 cut(s) 1125
MmeI TCCRAC 2 cut(s) 238, 745
MnlI CCTC 9 cut(s) 209, 241, 273, 312, 566, 798, 979, 1159, 1171
Mph1103I ATGCAT 2 cut(s) 687, 1363
MroI TCCGGA 1 cut(s) 836
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 5 cut(s) 161, 725, 911, 1034, 1308
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 837, 1377
MspR9I CCNGG 3 cut(s) 699, 1268, 1378
MunI CAATTG 2 cut(s) 308, 864
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 2 cut(s) 699, 1268
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 422, 857, 1102
NciI CCSGG 1 cut(s) 1378
NdeI CATATG 1 cut(s) 89
NdeII GATC 5 cut(s) 285, 404, 805, 1040, 1073
NheI GCTAGC 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 591, 1226
NmeAIII GCCGAG 1 cut(s) 437
NmuCI GTSAC 2 cut(s) 610, 1372
NsiI ATGCAT 2 cut(s) 687, 1363
NspV TTCGAA 1 cut(s) 1284
PceI AGGCCT 1 cut(s) 301
PctI GAATGC 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 470, 1078, 1109
PflFI GACNNNGTC 1 cut(s) 1268
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 1 cut(s) 1125
PpsI GAGTC 1 cut(s) 1125
PshBI ATTAAT 1 cut(s) 161
Psp124BI GAGCTC 2 cut(s) 1192, 1302
Psp1406I AACGTT 1 cut(s) 1100
Psp6I CCWGG 2 cut(s) 697, 1266
PspEI GGTNACC 1 cut(s) 1372
PspGI CCWGG 2 cut(s) 697, 1266
PspN4I GGNNCC 2 cut(s) 591, 1226
PspPI GGNCC 4 cut(s) 550, 589, 1016, 1152
PstNI CAGNNNCTG 1 cut(s) 959
PsyI GACNNNGTC 1 cut(s) 1268
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SacI GAGCTC 2 cut(s) 1192, 1302
SaqAI TTAA 5 cut(s) 161, 725, 911, 1034, 1308
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 5 cut(s) 285, 404, 805, 1040, 1073
Sau96I GGNCC 4 cut(s) 550, 589, 1016, 1152
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 1125
ScrFI CCNGG 3 cut(s) 699, 1268, 1378
SduI GDGCHC 2 cut(s) 1192, 1302
SexAI ACCWGGT 1 cut(s) 1266
SfaNI GCATC 3 cut(s) 130, 587, 1370
SfuI TTCGAA 1 cut(s) 1284
SinI GGWCC 4 cut(s) 550, 589, 1016, 1152
SmlI CTYRAG 2 cut(s) 791, 1025
SmoI CTYRAG 2 cut(s) 791, 1025
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 7 cut(s) 274, 429, 669, 761, 851, 1150, 1229
SspMI CTAG 4 cut(s) 344, 645, 809, 1262
SstI GAGCTC 2 cut(s) 1192, 1302
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 3 cut(s) 697, 1266, 1376
TaaI ACNGT 2 cut(s) 625, 955
TaiI ACGT 2 cut(s) 62, 1103
TaqI TCGA 3 cut(s) 1076, 1081, 1284
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 3 cut(s) 470, 1078, 1109
Tru1I TTAA 5 cut(s) 161, 725, 911, 1034, 1308
Tru9I TTAA 5 cut(s) 161, 725, 911, 1034, 1308
TscAI CASTG 4 cut(s) 297, 619, 960, 1074
TseFI GTSAC 2 cut(s) 610, 1372
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 2 cut(s) 610, 1372
TspDTI ATGAA 4 cut(s) 509, 611, 647, 912
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 4 cut(s) 297, 619, 960, 1074
Tth111I GACNNNGTC 1 cut(s) 1268
VpaK11BI GGWCC 4 cut(s) 550, 589, 1016, 1152
VspI ATTAAT 1 cut(s) 161
XapI RAATTY 5 cut(s) 558, 872, 1124, 1158, 1348
XbaI TCTAGA 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 4 cut(s) 344, 645, 809, 1262
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 2 cut(s) 687, 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.