Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017048.1

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2102

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017048.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 890 bp

tagtctaccgaatgtattggctttgccaccacattcatacttataagaaaacccaggttgctctggtccatggaatttctatgggaggaggtgcttctctaatggttccaatgaagttttctgtagtcacagaaaaaactgttttttccactccagaagcgagcattggctttcatactgattgtggtttctcatatatgcattcccatcttcccgggcatctcggtgaattcttggccttgaccggagcaagacttaatggtaaggaattggttgcagctggattggcaacacattttgtcccacttgagaaactgtctgatctagagaagcgtttgataagcttaaactcaggagatgctaatgcagtgaaggctgcaattgaagagttctctgtgaaagttcagcctgatgaagaaagtgtcttaaacaagcagtcgataattgatgagtgcttctccaaggacactgtggcagagattataaactcatttgaagctgaggcaaagaaagaaggaaatggatggataggtcctgttcttaagggcttgaaaagatcatctcccacaggattgagaataacactaagatcgattcgcgaaggaaggaagcaaacattggctgaagctctgaagaaggaatttcgactcacaatcaatatactaagaagcaccatatccgaggatgtatatgagggtattagggctctcactattgacaaagataacgctcctaagtggaatccacccacccttgacgaggtggacgatgagaagatagacctcgtttttgagccgtttgcagaagatttggagctcaagattcaagaaaatgaaaaattcaggtgggatggcaaatatgagaattcaccctatccatccttgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

295

Amino Acids

33.01

Weight (kDa)

5.78

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	44, 484
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	599
AcsI	RAATTY	5 cut(s)	74, 229, 640, 838, 864
AcuI	CTGAAG	2 cut(s)	644, 652
AfiI	CCNNNNNNNGG	1 cut(s)	759
AflII	CTTAAG	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	385, 496, 552, 826, 885
AjnI	CCWGG	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	6 cut(s)	102, 134, 149, 181, 601, 633
AluBI	AGCT	5 cut(s)	280, 344, 499, 628, 816
AluI	AGCT	5 cut(s)	280, 344, 499, 628, 816
Alw21I	GWGCWC	1 cut(s)	818
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	277, 376
ApoI	RAATTY	5 cut(s)	74, 229, 640, 838, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	772, 804
AspS9I	GGNCC	2 cut(s)	66, 532
AsuC2I	CCSGG	2 cut(s)	215, 216
AsuHPI	GGTGA	2 cut(s)	238, 860
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	66, 532
BanII	GRGCYC	2 cut(s)	708, 818
Bbv12I	GWGCWC	1 cut(s)	818
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	289, 363
BccI	CCATC	4 cut(s)	215, 518, 844, 885
BceAI	ACGGC	1 cut(s)	780
BciT130I	CCWGG	1 cut(s)	55
BcnI	CCSGG	2 cut(s)	215, 216
BfaI	CTAG	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	541
BisI	GCNGC	2 cut(s)	278, 377
BlsI	GCNGC	2 cut(s)	279, 378
Bme1390I	CCNGG	3 cut(s)	55, 215, 216
Bme18I	GGWCC	2 cut(s)	66, 532
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	66, 532
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	3 cut(s)	55, 215, 216
BmsI	GCATC	2 cut(s)	228, 348
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	328, 802
BpuMI	CCSGG	2 cut(s)	215, 216
Bsa29I	ATCGAT	1 cut(s)	592
BsaJI	CCNNGG	5 cut(s)	53, 69, 214, 461, 680
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	592
BseDI	CCNNGG	5 cut(s)	53, 69, 214, 461, 680
BseGI	GGATG	4 cut(s)	529, 690, 855, 877
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	365, 491
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	289, 363
Bsh1236I	CGCG	1 cut(s)	599
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	818
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	215, 245
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	708, 818
Bsp143I	GATC	3 cut(s)	321, 556, 589
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	599
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	364, 492
BspDI	ATCGAT	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	541
BssECI	CCNNGG	5 cut(s)	53, 69, 214, 461, 680
BssMI	GATC	3 cut(s)	321, 556, 589
BssT1I	CCWWGG	2 cut(s)	69, 461
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	141, 317, 471
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	5 cut(s)	351, 500, 586, 664, 734
BstDSI	CCRYGG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	757
BstF5I	GGATG	4 cut(s)	529, 690, 855, 877
BstFNI	CGCG	1 cut(s)	599
BstKTI	GATC	3 cut(s)	324, 559, 592
BstMBI	GATC	3 cut(s)	321, 556, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 373
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	53, 213, 214
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	289, 363
Bsu15I	ATCGAT	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	592
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	529, 690, 855, 877
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	374, 467
BtuMI	TCGCGA	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	66, 532
Cfr9I	CCCGGG	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	592
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	5 cut(s)	351, 500, 586, 664, 734
DpnI	GATC	3 cut(s)	323, 558, 591
DpnII	GATC	3 cut(s)	321, 556, 589
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	69, 461
Eco24I	GRGCYC	2 cut(s)	708, 818
Eco47I	GGWCC	2 cut(s)	66, 532
Eco53kI	GAGCTC	1 cut(s)	816
Eco57I	CTGAAG	2 cut(s)	644, 652
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	816
EcoNI	CCTNNNNNAGG	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	2 cut(s)	229, 864
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	69, 461
EcoT22I	ATGCAT	1 cut(s)	203
EcoT38I	GRGCYC	2 cut(s)	708, 818
ErhI	CCWWGG	2 cut(s)	69, 461
FaeI	CATG	1 cut(s)	73
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	278, 377
FokI	GGATG	4 cut(s)	536, 697, 862, 864
FriOI	GRGCYC	2 cut(s)	708, 818
Fsp4HI	GCNGC	2 cut(s)	278, 377
FspBI	CTAG	1 cut(s)	325
GluI	GCNGC	2 cut(s)	278, 377
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	2 cut(s)	215, 245
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	4 cut(s)	594, 647, 741, 822
HpaII	CCGG	2 cut(s)	215, 245
HphI	GGTGA	2 cut(s)	238, 860
Hpy166II	GTNNAC	2 cut(s)	6, 765
Hpy188I	TCNGA	3 cut(s)	321, 632, 681
Hpy188III	TCNNGA	6 cut(s)	154, 325, 353, 598, 819, 826
Hpy8I	GTNNAC	2 cut(s)	6, 765
HpyAV	CCTTC	5 cut(s)	366, 508, 595, 599, 630
HpyCH4III	ACNGT	3 cut(s)	141, 317, 471
HpyCH4V	TGCA	5 cut(s)	201, 277, 367, 379, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 373
HpyF3I	CTNAG	5 cut(s)	351, 500, 586, 664, 734
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	321, 556, 589
LmnI	GCTCC	3 cut(s)	247, 735, 813
Lsp1109I	GCAGC	2 cut(s)	289, 363
LweI	GCATC	2 cut(s)	228, 348
MaeI	CTAG	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	323, 558, 591
MboI	GATC	3 cut(s)	321, 556, 589
MboII	GAAGA	6 cut(s)	202, 397, 427, 645, 786, 817
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	708, 818
MluCI	AATT	9 cut(s)	74, 229, 268, 380, 443, 640, 838, 864, 885
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	7 cut(s)	79, 82, 495, 675, 687, 753, 793
Mph1103I	ATGCAT	1 cut(s)	203
MseI	TTAA	4 cut(s)	257, 346, 427, 542
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	541
MspI	CCGG	2 cut(s)	215, 245
MspR9I	CCNGG	3 cut(s)	55, 215, 216
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	286, 373
NciI	CCSGG	2 cut(s)	215, 216
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	321, 556, 589
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	126
NruI	TCGCGA	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	764
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	594, 741, 822
PkrI	GCNGC	2 cut(s)	279, 378
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
PpuMI	RGGWCCY	1 cut(s)	532
PsiI	TTATAA	2 cut(s)	44, 484
Psp124BI	GAGCTC	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	66, 532
PspPPI	RGGWCCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	280
RruI	TCGCGA	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	257, 346, 427, 542
SatI	GCNGC	2 cut(s)	278, 377
Sau3AI	GATC	3 cut(s)	321, 556, 589
Sau96I	GGNCC	2 cut(s)	66, 532
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	3 cut(s)	55, 215, 216
SduI	GDGCHC	2 cut(s)	708, 818
SfaNI	GCATC	2 cut(s)	228, 348
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	66, 532
SmaI	CCCGGG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	307, 541, 817
SmoI	CTYRAG	3 cut(s)	307, 541, 817
Sse9I	AATT	9 cut(s)	74, 229, 268, 380, 443, 640, 838, 864, 885
SspMI	CTAG	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	818
StyD4I	CCNGG	3 cut(s)	53, 213, 214
StyI	CCWWGG	2 cut(s)	69, 461
TaaI	ACNGT	3 cut(s)	141, 317, 471
TaqI	TCGA	3 cut(s)	439, 592, 645
TasI	AATT	9 cut(s)	74, 229, 268, 380, 443, 640, 838, 864, 885
TfiI	GAWTC	3 cut(s)	594, 741, 822
Tru1I	TTAA	4 cut(s)	257, 346, 427, 542
Tru9I	TTAA	4 cut(s)	257, 346, 427, 542
TscAI	CASTG	2 cut(s)	374, 474
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	2 cut(s)	277, 376
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	5 cut(s)	25, 127, 163, 428, 848
TspMI	CCCGGG	1 cut(s)	214
TspRI	CASTG	2 cut(s)	374, 474
Vha464I	CTTAAG	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	66, 532
XagI	CCTNNNNNAGG	1 cut(s)	757
XapI	RAATTY	5 cut(s)	74, 229, 640, 838, 864
XbaI	TCTAGA	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmaI	CCCGGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	325
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.