Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Reverse (-)

19386855 .. 19391468

Gene Structure 4614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G176900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCACAAGAAGTTGTAAATTCAGATGAGGTTGTTCTTGGAGAAGAAATAGAGCATGTGAGGTTGATCACCTTGAACAGGCCTCGTCATTTGAATGTCATCTCATCAAAAGTGGTTTCTTTGCTAGCAGAATACTTGGAAAAGTGGGAAAAAGATGATAAAGCTGAGCTTGTAATTATCAAGGGATCGGGTCGAGCTTTTTCAGCCGGTGGGGACTTGAAGATGTTCTATGATGGCAGGAACTCAAAGGATTCCTGCCTTGAAGTGGCTTACAGAATGTATTGGCTTGGCTATCACATTCATACTTACAAGAAAACCCAGGTGGCTCTGGTCCATGGAATTTCAATGGGCGGAGGCGCATCTTTAATGGTCCCAATGAAATTCTCGGTAGTCACAGAAAAAACTGTATTTGCAACTCCGGAAGCTAGTATTGGCTTTCATACTGATTGTGGTTTCTCATATATACTATCCCATCTTCCTGGGCATCTCGGGGAGTTCTTTGCCTTAACAGGAGCAAGACTGAATGGTAAGGAATTGGTTGCAGCTGGATTGGCAACCCATTTTGTCCCTCTTGAGAAATTATCTGATCTAGAGAAGCGTTTGATAAGCTTAAACTCTGGAGATGAGAATGCAGTCAAAGCTGCGATTGAAGAATTTGCGGTGGAAGTCCAGCCTGATGAAGAAAGTGTTTTAAACAAGCAGTCAATAATTGATGAGTGCTTCTCCAAAGATACAGTGGCTGAGATTATAAAATCATTTGAAGTAGAGGCAACCAAAGAAGGAAATGGATGGATAAGTCCAGTTCTGAAGGGCTTAAAAAGATCATCCCCTACAGGATTGAGAATAACACTAAGATCGATTCGTGAAGGAAGGAAGCAAACATTGCCTGAAAGTCTGAAGAAGGAATTTAGACTCACAATCAATATACTAAGAGCCATAATATCTGAGGATGTATATGAGGGAATTAGAGCTCTCACTATTGACAAGGATAATGCCCCTAAGTGGAACCCACCATCTCTTGACAATGCGGGTGATGAGAAGATAGACCAAGTGTTTCAGCCGTTTGAAGAAGATTGGGAGCTCCAGATTCCTGAAAAGGAAGAACACAGGTGGGATGGCAAATATGAGAATTCACCTTATGCATCTTTGAAGATATTTGAGAAAAGTCCAGCAACGATCAAGAACAAGAACTACGGAATTTGGCTGCGATATAAGAGCCGAACCGGTTATCACCACATGTACAAGGAATATTGGTGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

421

Amino Acids

47.62

Weight (kDa)

5.92

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	3 cut(s)	351, 659, 1028
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	7 cut(s)	19, 339, 380, 653, 905, 1129, 1197
AcuI	CTGAAG	2 cut(s)	827, 917
AfaI	GTAC	1 cut(s)	1241
AfiI	CCNNNNNNNGG	3 cut(s)	78, 265, 1002
AflIII	ACRYGT	1 cut(s)	1236
AgeI	ACCGGT	1 cut(s)	1223
AgsI	TTSAA	9 cut(s)	76, 94, 220, 263, 345, 650, 761, 1067, 1150
AjnI	CCWGG	2 cut(s)	318, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	9 cut(s)	164, 169, 197, 425, 545, 609, 641, 971, 1081
AluI	AGCT	9 cut(s)	164, 169, 197, 425, 545, 609, 641, 971, 1081
Alw21I	GWGCWC	2 cut(s)	973, 1083
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	542, 641, 1204
ApoI	RAATTY	7 cut(s)	19, 339, 380, 653, 905, 1129, 1197
AsiGI	ACCGGT	1 cut(s)	1223
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	331, 370
AsuHPI	GGTGA	4 cut(s)	61, 1043, 1125, 1223
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	331, 370
BanII	GRGCYC	2 cut(s)	973, 1083
Bbv12I	GWGCWC	2 cut(s)	973, 1083
BbvI	GCAGC	3 cut(s)	554, 628, 1191
BccI	CCATC	5 cut(s)	227, 480, 783, 1021, 1109
BceAI	ACGGC	1 cut(s)	1045
BciT130I	CCWGG	2 cut(s)	320, 480
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	3 cut(s)	125, 426, 590
BfmI	CTRYAG	1 cut(s)	831
BisI	GCNGC	3 cut(s)	543, 642, 1205
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	544, 643, 1206
Bme1390I	CCNGG	2 cut(s)	320, 480
Bme18I	GGWCC	2 cut(s)	331, 370
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	331, 370
BmiI	GGNNCC	2 cut(s)	372, 1007
BmrFI	CCNGG	2 cut(s)	320, 480
BmsI	GCATC	3 cut(s)	368, 493, 1151
BmtI	GCTAGC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	2 cut(s)	639, 1067
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	318, 334, 479
BsaWI	WCCGGW	2 cut(s)	418, 1223
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 265, 1002
Bse118I	RCCGGY	2 cut(s)	206, 1223
Bse1I	ACTGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	881
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	320, 480
BseCI	ATCGAT	1 cut(s)	857
BseDI	CCNNGG	3 cut(s)	318, 334, 479
BseGI	GGATG	4 cut(s)	794, 824, 955, 1120
BseLI	CCNNNNNNNGG	3 cut(s)	78, 265, 1002
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	3 cut(s)	156, 732, 936
BseNI	ACTGG	1 cut(s)	800
BseXI	GCAGC	3 cut(s)	554, 628, 1191
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	1223
BshVI	ATCGAT	1 cut(s)	857
BsiHKAI	GWGCWC	2 cut(s)	973, 1083
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	207, 419, 1224
BslFI	GGGAC	3 cut(s)	227, 356, 551
BslI	CCNNNNNNNGG	3 cut(s)	78, 265, 1002
BsmFI	GGGAC	3 cut(s)	227, 356, 551
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	973, 1083
Bsp13I	TCCGGA	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	1239
Bsp143I	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	3 cut(s)	351, 659, 1028
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	157, 733, 937
BspDI	ATCGAT	1 cut(s)	857
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	372, 1007
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	881
BsrFI	RCCGGY	2 cut(s)	206, 1223
BsrGI	TGTACA	1 cut(s)	1239
BsrI	ACTGG	1 cut(s)	800
BssAI	RCCGGY	2 cut(s)	206, 1223
BssECI	CCNNGG	3 cut(s)	318, 334, 479
BssMI	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	320, 480
Bst4CI	ACNGT	2 cut(s)	406, 736
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstAUI	TGTACA	1 cut(s)	1239
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	6 cut(s)	165, 741, 851, 929, 945, 999
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	794, 824, 955, 1120
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	6 cut(s)	69, 188, 589, 824, 857, 1179
BstMBI	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
BstNI	CCWGG	2 cut(s)	320, 480
BstNSI	RCATGY	2 cut(s)	59, 1240
BstSCI	CCNGG	2 cut(s)	318, 478
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	554, 628, 1191
BstXI	CCANNNNNNTGG	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	857
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	794, 824, 955, 1120
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	2 cut(s)	206, 1223
Cfr13I	GGNCC	2 cut(s)	331, 370
ClaI	ATCGAT	1 cut(s)	857
Csp6I	GTAC	1 cut(s)	1240
CspAI	ACCGGT	1 cut(s)	1223
CviAII	CATG	3 cut(s)	56, 335, 1237
CviQI	GTAC	1 cut(s)	1240
DdeI	CTNAG	6 cut(s)	165, 741, 851, 929, 945, 999
DpnI	GATC	6 cut(s)	68, 187, 588, 823, 856, 1178
DpnII	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
DraI	TTTAAA	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	366
Ecl136II	GAGCTC	2 cut(s)	971, 1081
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	2 cut(s)	973, 1083
Eco47I	GGWCC	2 cut(s)	331, 370
Eco53kI	GAGCTC	2 cut(s)	971, 1081
Eco57I	CTGAAG	2 cut(s)	827, 917
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	971, 1081
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	318, 478
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	1144
EcoT38I	GRGCYC	2 cut(s)	973, 1083
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	59, 338, 1240
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	3 cut(s)	227, 356, 551
FatI	CATG	3 cut(s)	55, 334, 1236
FauI	CCCGC	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	543, 642, 1205
FokI	GGATG	4 cut(s)	801, 811, 962, 1127
FriOI	GRGCYC	2 cut(s)	973, 1083
Fsp4HI	GCNGC	3 cut(s)	543, 642, 1205
FspBI	CTAG	3 cut(s)	125, 426, 590
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	543, 642, 1205
GsuI	CTGGAG	2 cut(s)	639, 1067
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	3 cut(s)	207, 419, 1224
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	59, 338, 1240
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	4 cut(s)	251, 859, 912, 1087
HpaII	CCGG	3 cut(s)	207, 419, 1224
HphI	GGTGA	4 cut(s)	61, 1043, 1125, 1223
Hpy188I	TCNGA	5 cut(s)	25, 586, 807, 897, 946
Hpy188III	TCNNGA	9 cut(s)	419, 572, 590, 618, 863, 1019, 1084, 1091, 1180
HpyAV	CCTTC	5 cut(s)	773, 802, 860, 864, 895
HpyCH4III	ACNGT	2 cut(s)	406, 736
HpyCH4V	TGCA	4 cut(s)	413, 542, 632, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
HpyF3I	CTNAG	6 cut(s)	165, 741, 851, 929, 945, 999
Hsp92II	CATG	3 cut(s)	59, 338, 1240
HspAI	GCGC	1 cut(s)	357
Kpn2I	TCCGGA	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
LmnI	GCTCC	3 cut(s)	512, 1078, 1086
Lsp1109I	GCAGC	3 cut(s)	554, 628, 1191
LweI	GCATC	3 cut(s)	368, 493, 1151
MaeI	CTAG	3 cut(s)	125, 426, 590
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	6 cut(s)	68, 187, 588, 823, 856, 1178
MboI	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
MhlI	GDGCHC	2 cut(s)	973, 1083
MlyI	GAGTC	1 cut(s)	906
MnlI	CCTC	8 cut(s)	22, 54, 93, 347, 579, 760, 940, 952
Mph1103I	ATGCAT	1 cut(s)	1144
MroI	TCCGGA	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	5 cut(s)	365, 506, 611, 692, 815
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	3 cut(s)	207, 419, 1224
MspR9I	CCNGG	2 cut(s)	320, 480
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	320, 480
MwoI	GCNNNNNNNGC	4 cut(s)	203, 551, 638, 883
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	59, 338, 1240
NlaIV	GGNNCC	2 cut(s)	372, 1007
NmuCI	GTSAC	1 cut(s)	391
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	2 cut(s)	59, 1240
PceI	AGGCCT	1 cut(s)	82
PciI	ACATGT	1 cut(s)	1236
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	251, 859, 1087
PinAI	ACCGGT	1 cut(s)	1223
PkrI	GCNGC	3 cut(s)	544, 643, 1206
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PscI	ACATGT	1 cut(s)	1236
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	2 cut(s)	973, 1083
Psp6I	CCWGG	2 cut(s)	318, 478
PspGI	CCWGG	2 cut(s)	318, 478
PspN4I	GGNNCC	2 cut(s)	372, 1007
PspPI	GGNCC	2 cut(s)	331, 370
PsrI	GAACNNNNNNTAC	2 cut(s)	1175, 1207
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	1241
RsaNI	GTAC	1 cut(s)	1240
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	2 cut(s)	973, 1083
SaqAI	TTAA	5 cut(s)	365, 506, 611, 692, 815
SatI	GCNGC	3 cut(s)	543, 642, 1205
Sau3AI	GATC	6 cut(s)	66, 185, 586, 821, 854, 1176
Sau96I	GGNCC	2 cut(s)	331, 370
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	2 cut(s)	320, 480
SduI	GDGCHC	2 cut(s)	973, 1083
SfaNI	GCATC	3 cut(s)	368, 493, 1151
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	331, 370
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	351, 659, 1028
SspI	AATATT	1 cut(s)	1250
SspMI	CTAG	3 cut(s)	125, 426, 590
SstI	GAGCTC	2 cut(s)	973, 1083
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	318, 478
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	406, 736
TaqI	TCGA	2 cut(s)	193, 857
TatI	WGTACW	1 cut(s)	1239
TfiI	GAWTC	3 cut(s)	251, 859, 1087
Tru1I	TTAA	5 cut(s)	365, 506, 611, 692, 815
Tru9I	TTAA	5 cut(s)	365, 506, 611, 692, 815
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	542, 641, 1204
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	4 cut(s)	290, 392, 428, 693
TspGWI	ACGGA	1 cut(s)	1209
TspRI	CASTG	1 cut(s)	741
VpaK11BI	GGWCC	2 cut(s)	331, 370
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	7 cut(s)	19, 339, 380, 653, 905, 1129, 1197
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	2 cut(s)	59, 1240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	3 cut(s)	125, 426, 590
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.