Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Reverse (-)

30536262 .. 30539886

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38591.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCACATGAAATTGCAACTTCAGATGAACCGGTTCTTCTGGTAGAAGAAATGGAGCACGTGAGGTTGATCACATTGAACAGACCTCGTCAATTGAATGTCATCTCATCAAATATGGTTTCTTTGCTTGCTGAAAACTTGGAGAAGTGGGAAAAAGACGATAAGGCTGAGCTTGTCATCATCAAGGGATCAGGCCGAGCTTTTTCAGCTGGTGGGGACTTGAAAATGTTTTATGATGGCAGGAAATCAAAGGATTCATGCCTTGAAGTAGTCTACCGAATGTATTGGCTTTGCCACCACATTCATAGTTATAAGAAAACACAGGTTGCTCTGGTCCATGGACTTTCTATGGGTGGAGGTGCCTCTCTAATGGTTCCAATGAAGTTTTCCATAGTCACGGAAAAAACTGTTTTTTCCACTCCAGAAGCAAGCATTGGCTTTCATACTGATTGTGGTTTCTCATATATGCTTTCCCATCTTCCCGGGCATCTCGGTGAATTCTTGGCCTTAACTGGAGCAAGACTTAATGGTAAGGAATTGGTTGCAGCTGGATTGGCCACACACTTTGTCCCTCTTGAGAAACTGTCTGATCTAGAGAAGCGCTTGGTAAGCTTAAACTCAGGAGATGCTAATGCAGTGAAGGCTGCAATCGAAGAGTTCTCTGTGACAGTTCAGCCTGATGAAGAAAGTGTCTTAAACAAGCAGTCGACAATTGATGAGTGCTTCTCCAAGGACACTGTGGCAGAGATTATAAACTCATTTGAAGCTGAGGCAAAGAAAGAAGGCAATGGATGGATAGGTCCCGTTCTTAAGGGCTTGAAAAGATCATCTCCTACAGGACTGAGAATAACACTAAGATCGATTCGTGAAGGAAGGAAGCAAACATTGGCCGAAGCTCTGAAGAAGGAATTTCGACTCACAATCAATATATTAAGAAGCACCATATCCGAGGATGTATACGAGGGTATCAGGGCTCTCACCATTGACAAAGATAACGCTCCTAAGTGGAATCCACCCACTCTTGAAGAGGTGGACGATGAGAAGATAGACCTCGTTTTCAAGCCATTTGCAGAAGATTTGGAGCTGAAGATACAAGAAAACGAAGAACTCAGGTGGGATGGCAAATACGAGTGTTCAGCCTATCCATCTTTTAAGGCGACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

389

Amino Acids

43.32

Weight (kDa)

5.47

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	18 - 254	1.9e-31	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	21 - 288	6.7e-92	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	312, 752
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	3 cut(s)	273, 707, 957
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	555, 888
AcsI	RAATTY	2 cut(s)	497, 908
AcuI	CTGAAG	3 cut(s)	6, 920, 1106
AcvI	CACGTG	1 cut(s)	61
AfeI	AGCGCT	1 cut(s)	602
AflII	CTTAAG	1 cut(s)	809
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	8 cut(s)	79, 97, 223, 266, 764, 820, 1025, 1060
AjuI	GAANNNNNNNTTGG	6 cut(s)	370, 402, 417, 449, 869, 901
AluBI	AGCT	8 cut(s)	172, 200, 209, 548, 612, 767, 896, 1084
AluI	AGCT	8 cut(s)	172, 200, 209, 548, 612, 767, 896, 1084
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	602
AoxI	GGCC	4 cut(s)	193, 504, 555, 888
ApeKI	GCWGC	2 cut(s)	545, 644
ApoI	RAATTY	2 cut(s)	497, 908
AsiGI	ACCGGT	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	334, 800
AsuC2I	CCSGG	2 cut(s)	483, 484
AsuHPI	GGTGA	2 cut(s)	506, 970
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	334, 800
BaeI	ACNNNNGTAYC	2 cut(s)	949, 982
BalI	TGGCCA	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	976
BbrPI	CACGTG	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	2 cut(s)	557, 631
BccI	CCATC	5 cut(s)	230, 483, 786, 1112, 1153
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	483, 484
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	604
BfrI	CTTAAG	1 cut(s)	809
BisI	GCNGC	2 cut(s)	546, 645
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	547, 646
Bme1390I	CCNGG	2 cut(s)	483, 484
Bme18I	GGWCC	2 cut(s)	334, 800
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	334, 800
BmiI	GGNNCC	3 cut(s)	361, 375, 802
BmrFI	CCNGG	2 cut(s)	483, 484
BmsI	GCATC	2 cut(s)	496, 616
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	2 cut(s)	405, 534
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	483, 484
Bsa29I	ATCGAT	1 cut(s)	860
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	4 cut(s)	337, 482, 729, 948
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	793
BseCI	ATCGAT	1 cut(s)	860
BseDI	CCNNGG	4 cut(s)	337, 482, 729, 948
BseGI	GGATG	3 cut(s)	797, 958, 1123
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	6 cut(s)	159, 633, 759, 833, 1123, 1152
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	557, 631
BshFI	GGCC	4 cut(s)	195, 506, 557, 890
BshNI	GGYRCC	1 cut(s)	359
BshTI	ACCGGT	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	860
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	32, 483
BslFI	GGGAC	3 cut(s)	230, 554, 786
BsmFI	GGGAC	3 cut(s)	230, 554, 786
BsnI	GGCC	4 cut(s)	195, 506, 557, 890
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	60, 976
Bsp143I	GATC	5 cut(s)	69, 188, 589, 824, 857
Bsp1720I	GCTNAGC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	337
BspANI	GGCC	4 cut(s)	195, 506, 557, 890
BspCNI	CTCAG	6 cut(s)	160, 632, 760, 834, 1122, 1153
BspDI	ATCGAT	1 cut(s)	860
BspLI	GGNNCC	3 cut(s)	361, 375, 802
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	793
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	4 cut(s)	337, 482, 729, 948
BssMI	GATC	5 cut(s)	69, 188, 589, 824, 857
BssNAI	GTATAC	1 cut(s)	958
BssT1I	CCWWGG	2 cut(s)	337, 729
Bst1107I	GTATAC	1 cut(s)	958
Bst4CI	ACNGT	4 cut(s)	409, 585, 670, 739
Bst6I	CTCTTC	2 cut(s)	648, 1020
BstAFI	CTTAAG	1 cut(s)	809
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	129, 430
BstDEI	CTNAG	8 cut(s)	168, 619, 768, 842, 854, 1002, 1109, 1161
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	797, 958, 1123
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	5 cut(s)	72, 191, 592, 827, 860
BstMBI	GATC	5 cut(s)	69, 188, 589, 824, 857
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 554, 609, 641
BstSCI	CCNGG	2 cut(s)	481, 482
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	557, 631
BstZ17I	GTATAC	1 cut(s)	958
Bsu15I	ATCGAT	1 cut(s)	860
BsuRI	GGCC	4 cut(s)	195, 506, 557, 890
BsuTUI	ATCGAT	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	797, 958, 1123
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 735
Cac8I	GCNNGC	2 cut(s)	129, 430
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	334, 800
Cfr9I	CCCGGG	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	860
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	3 cut(s)	8, 258, 338
DdeI	CTNAG	8 cut(s)	168, 619, 768, 842, 854, 1002, 1109, 1161
DpnI	GATC	5 cut(s)	71, 190, 591, 826, 859
DpnII	GATC	5 cut(s)	69, 188, 589, 824, 857
EaeI	YGGCCR	2 cut(s)	555, 888
Eam1104I	CTCTTC	2 cut(s)	648, 1020
EarI	CTCTTC	2 cut(s)	648, 1020
Eco130I	CCWWGG	2 cut(s)	337, 729
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	2 cut(s)	334, 800
Eco47III	AGCGCT	1 cut(s)	602
Eco57I	CTGAAG	3 cut(s)	6, 920, 1106
Eco72I	CACGTG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRI	GAATTC	1 cut(s)	497
EcoT14I	CCWWGG	2 cut(s)	337, 729
EcoT38I	GRGCYC	1 cut(s)	976
ErhI	CCWWGG	2 cut(s)	337, 729
FaeI	CATG	3 cut(s)	11, 261, 341
FaqI	GGGAC	3 cut(s)	230, 554, 786
FatI	CATG	3 cut(s)	7, 257, 337
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	3 cut(s)	273, 707, 957
Fnu4HI	GCNGC	2 cut(s)	546, 645
FokI	GGATG	3 cut(s)	804, 965, 1130
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	2 cut(s)	546, 645
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	2 cut(s)	546, 645
GsuI	CTGGAG	2 cut(s)	405, 534
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	195, 506, 557, 890
HapII	CCGG	2 cut(s)	32, 483
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	3 cut(s)	11, 261, 341
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	4 cut(s)	254, 862, 915, 1009
HpaII	CCGG	2 cut(s)	32, 483
HphI	GGTGA	2 cut(s)	506, 970
Hpy166II	GTNNAC	4 cut(s)	274, 708, 958, 1033
Hpy188I	TCNGA	4 cut(s)	25, 589, 900, 949
Hpy188III	TCNNGA	6 cut(s)	422, 575, 593, 621, 866, 1022
Hpy8I	GTNNAC	4 cut(s)	274, 708, 958, 1033
HpyAV	CCTTC	5 cut(s)	634, 776, 863, 867, 898
HpyCH4III	ACNGT	4 cut(s)	409, 585, 670, 739
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	17, 545, 635, 647, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 554, 609, 641
HpyF3I	CTNAG	8 cut(s)	168, 619, 768, 842, 854, 1002, 1109, 1161
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	11, 261, 341
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	69, 188, 589, 824, 857
LmnI	GCTCC	4 cut(s)	55, 515, 1003, 1081
Lsp1109I	GCAGC	2 cut(s)	557, 631
LweI	GCATC	2 cut(s)	496, 616
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	394, 664
MalI	GATC	5 cut(s)	71, 190, 591, 826, 859
MboI	GATC	5 cut(s)	69, 188, 589, 824, 857
MfeI	CAATTG	2 cut(s)	92, 711
MhlI	GDGCHC	2 cut(s)	60, 976
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	6 cut(s)	12, 92, 497, 536, 711, 908
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	909
Mox20I	TGGCCA	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	7 cut(s)	509, 525, 614, 695, 810, 932, 1152
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	2 cut(s)	209, 548
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	2 cut(s)	32, 483
MspR9I	CCNGG	2 cut(s)	483, 484
MunI	CAATTG	2 cut(s)	92, 711
MwoI	GCNNNNNNNGC	4 cut(s)	206, 554, 609, 641
NciI	CCSGG	2 cut(s)	483, 484
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	5 cut(s)	69, 188, 589, 824, 857
NlaIII	CATG	3 cut(s)	11, 261, 341
NlaIV	GGNNCC	3 cut(s)	361, 375, 802
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	394, 664
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	254, 862, 1009
PflFI	GACNNNGTC	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	547, 646
PleI	GAGTC	1 cut(s)	909
PmaCI	CACGTG	1 cut(s)	61
PmlI	CACGTG	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	909
Ppu21I	YACGTR	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	800
PsiI	TTATAA	2 cut(s)	312, 752
Psp5II	RGGWCCY	1 cut(s)	800
PspCI	CACGTG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	361, 375, 802
PspPI	GGNCC	2 cut(s)	334, 800
PspPPI	RGGWCCY	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	87
PvuII	CAGCTG	2 cut(s)	209, 548
RseI	CAYNNNNRTG	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	706
SaqAI	TTAA	7 cut(s)	509, 525, 614, 695, 810, 932, 1152
SatI	GCNGC	2 cut(s)	546, 645
Sau3AI	GATC	5 cut(s)	69, 188, 589, 824, 857
Sau96I	GGNCC	2 cut(s)	334, 800
SchI	GAGTC	1 cut(s)	909
ScrFI	CCNGG	2 cut(s)	483, 484
SduI	GDGCHC	2 cut(s)	60, 976
SfaNI	GCATC	2 cut(s)	496, 616
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	2 cut(s)	334, 800
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	575, 809
SmoI	CTYRAG	2 cut(s)	575, 809
Sse9I	AATT	6 cut(s)	12, 92, 497, 536, 711, 908
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	481, 482
StyI	CCWWGG	2 cut(s)	337, 729
TaaI	ACNGT	4 cut(s)	409, 585, 670, 739
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	651, 707, 860, 913
TasI	AATT	6 cut(s)	12, 92, 497, 536, 711, 908
TfiI	GAWTC	3 cut(s)	254, 862, 1009
Tru1I	TTAA	7 cut(s)	509, 525, 614, 695, 810, 932, 1152
Tru9I	TTAA	7 cut(s)	509, 525, 614, 695, 810, 932, 1152
TscAI	CASTG	2 cut(s)	642, 742
TseFI	GTSAC	2 cut(s)	394, 664
TseI	GCWGC	2 cut(s)	545, 644
Tsp45I	GTSAC	2 cut(s)	394, 664
TspDTI	ATGAA	7 cut(s)	24, 42, 246, 293, 395, 431, 696
TspGWI	ACGGA	1 cut(s)	413
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	2 cut(s)	642, 742
Tth111I	GACNNNGTC	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	334, 800
XapI	RAATTY	2 cut(s)	497, 908
XbaI	TCTAGA	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmaI	CCCGGG	1 cut(s)	482
XmiI	GTMKAC	3 cut(s)	273, 707, 957
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.