Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007463

Physical Location & Seq

Genomic Coordinates Forward (+)

17296133 .. 17299622

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCACCTGAAGTTGCAACTTCAGATGAACCGGTTCTTCTTGGAGAAGAAATAGACCATGTGAGGTTGATGACGTTGAACAGACCTCGTCAATTAAATGTCATATCATCAAATACGGTTTCTTTGCTAGCTGAAAACTTGGAGAAGTGGGAAAAAGACGATAAGGCTGAGCTTGTAATCATCAAGGGATCAGGCCGAGCTTTTTCAGCCGGTGGGGACTTGAAAATGTTTTATGATGGCAGGAAATCAAAGGATTCATGTCTTGAAGTAGTCTACCGAATGTATTGGCTTTGCCACCACATTCATACTTATAAGAAAACCCAGGTTTCTCTGGTCCATGGAATTTCTATGGGAGGAGGTGCTTCTCTAATGGTTCCAATGAAGTTTTCTGTAGTCACAGAAAAAACTGTTTTTTCCACTCCAGAAGCGAGCATTGGCTTTCATACTGATTGTGGTTTCTCATATATGCATTCCCATCTTCCCGGGCATCTCGGTGAATTCTTGGCCTTGACCGGAGCAAGACTTAATGGTAAGGAATTGGTTGCAGCTGGCTTGGCAACACATTTTGTCCCACTTGAGAAACTGTCTGATCTAGAGAAGCTTTTGATAAGCTTAAACTCAGGAGATGCGAATGCAGTGAAGGCTGCAATTGAAGAGTTCTCTGTGAAAGTTCAGCCTGATGAAGAAAGTATCTTAAACAAGCAGTCGATAATTGATGAGTGCTTCTCCAAGGACACTGTGGCAGAGATTATAAACTCATTTGAAGCTGAGGGAAAGAAAGAAGGAAATGGATGGATAGGTCCTATTCTTAAGGGCTTGAAAAGATCATCTCCCACAGGATTGAGAATAACACTAAGATCGATTCGCGAAGGAAGGAACCAAACATTGGCTGAAGCTCTGAAGAAGGAATTTCGACTCACAATCAATATACTAAGAAGCACCATATCCGAGGATGTATATGAGGGTATTAGGGCTCTCACTATTGACAAAGATAACGCTCCTAAGTGGAATCCACCCACCCTTGACAAGGTGGACGATGAGAAGATAGACCTCGTTTTTGAGCCGTTTGCAGAAGATTTGGAGCTCAAGATTCAAGAAAATGAAAAATTCAGGTGGGATGGCAAATATGAGAATTCACCCTATCCATCCTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

385

Amino Acids

42.94

Weight (kDa)

5.52

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	20 - 254	7.9e-30	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	21 - 353	2.2e-113	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06550
fragaria_vesca	FvH4_6g38591 FvH4_6g38591 FvH4_6g38591
malus_domestica	MD09G1149500.v1.1
prunus_persica	Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176700_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1 Prupe.3G176900_v2.0.a1
pyrus_communis	pycom09g06880
rosa_chinensis	RchiOBHm_Chr2g0152011
rosa_laevigata	RLG00000020600
rosa_multiflora	Rmu_sc0017048.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096050
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491000 Rh2BG503300 Rh2CG477400 Rh2DG514600
rosa_wichuraiana	Rw2G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	312, 752
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	867
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	5 cut(s)	342, 497, 908, 1106, 1132
AcuI	CTGAAG	4 cut(s)	6, 30, 912, 920
AfiI	CCNNNNNNNGG	2 cut(s)	886, 1027
AflII	CTTAAG	1 cut(s)	809
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	8 cut(s)	79, 223, 266, 653, 764, 820, 1094, 1153
AjnI	CCWGG	1 cut(s)	321
AjuI	GAANNNNNNNTTGG	6 cut(s)	370, 402, 417, 449, 869, 901
AluBI	AGCT	9 cut(s)	131, 172, 200, 548, 601, 612, 767, 896, 1084
AluI	AGCT	9 cut(s)	131, 172, 200, 548, 601, 612, 767, 896, 1084
Alw21I	GWGCWC	1 cut(s)	1086
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	193, 504
ApeKI	GCWGC	2 cut(s)	545, 644
ApoI	RAATTY	5 cut(s)	342, 497, 908, 1106, 1132
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AsiGI	ACCGGT	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	334, 800
AsuC2I	CCSGG	2 cut(s)	483, 484
AsuHPI	GGTGA	2 cut(s)	506, 1128
AsuNHI	GCTAGC	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	334, 800
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	976, 1086
Bbv12I	GWGCWC	1 cut(s)	1086
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	2 cut(s)	557, 631
BccI	CCATC	5 cut(s)	230, 483, 786, 1112, 1153
BceAI	ACGGC	1 cut(s)	1048
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	2 cut(s)	483, 484
BfaI	CTAG	2 cut(s)	128, 593
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	809
BisI	GCNGC	2 cut(s)	546, 645
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	547, 646
Bme1390I	CCNGG	3 cut(s)	323, 483, 484
Bme18I	GGWCC	2 cut(s)	334, 800
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	334, 800
BmiI	GGNNCC	3 cut(s)	6, 375, 878
BmrFI	CCNGG	3 cut(s)	323, 483, 484
BmsI	GCATC	2 cut(s)	496, 616
BmtI	GCTAGC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	596, 1070
BpuMI	CCSGG	2 cut(s)	483, 484
Bsa29I	ATCGAT	1 cut(s)	860
BsaJI	CCNNGG	5 cut(s)	321, 337, 482, 729, 948
BsaWI	WCCGGW	2 cut(s)	31, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	886, 1027
Bse118I	RCCGGY	2 cut(s)	31, 209
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	860
BseDI	CCNNGG	5 cut(s)	321, 337, 482, 729, 948
BseGI	GGATG	4 cut(s)	797, 958, 1123, 1145
BseLI	CCNNNNNNNGG	2 cut(s)	886, 1027
BseMII	CTCAG	3 cut(s)	159, 633, 759
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	557, 631
Bsh1236I	CGCG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	195, 506
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	860
BsiHKAI	GWGCWC	1 cut(s)	1086
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	32, 210, 483, 513
BslFI	GGGAC	2 cut(s)	230, 554
BslI	CCNNNNNNNGG	2 cut(s)	886, 1027
BsmFI	GGGAC	2 cut(s)	230, 554
BsmI	GAATGC	2 cut(s)	469, 637
BsnI	GGCC	2 cut(s)	195, 506
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	976, 1086
Bsp143I	GATC	4 cut(s)	188, 589, 824, 857
Bsp1720I	GCTNAGC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	337
Bsp68I	TCGCGA	1 cut(s)	867
BspANI	GGCC	2 cut(s)	195, 506
BspCNI	CTCAG	3 cut(s)	160, 632, 760
BspDI	ATCGAT	1 cut(s)	860
BspFNI	CGCG	1 cut(s)	867
BspLI	GGNNCC	3 cut(s)	6, 375, 878
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	809
BsrFI	RCCGGY	2 cut(s)	31, 209
BssAI	RCCGGY	2 cut(s)	31, 209
BssECI	CCNNGG	5 cut(s)	321, 337, 482, 729, 948
BssMI	GATC	4 cut(s)	188, 589, 824, 857
BssT1I	CCWWGG	2 cut(s)	337, 729
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	4 cut(s)	118, 409, 585, 739
Bst6I	CTCTTC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	809
BstC8I	GCNNGC	3 cut(s)	129, 430, 550
BstDEI	CTNAG	6 cut(s)	168, 619, 768, 854, 932, 1002
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	4 cut(s)	797, 958, 1123, 1145
BstFNI	CGCG	1 cut(s)	867
BstKTI	GATC	4 cut(s)	191, 592, 827, 860
BstMBI	GATC	4 cut(s)	188, 589, 824, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 554, 641
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	321, 481, 482
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	867
BstV1I	GCAGC	2 cut(s)	557, 631
Bsu15I	ATCGAT	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	195, 506
BsuTUI	ATCGAT	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	797, 958, 1123, 1145
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 735
BtuMI	TCGCGA	1 cut(s)	867
Cac8I	GCNNGC	3 cut(s)	129, 430, 550
Cfr10I	RCCGGY	2 cut(s)	31, 209
Cfr13I	GGNCC	2 cut(s)	334, 800
Cfr9I	CCCGGG	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	860
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	3 cut(s)	59, 258, 338
DdeI	CTNAG	6 cut(s)	168, 619, 768, 854, 932, 1002
DpnI	GATC	4 cut(s)	190, 591, 826, 859
DpnII	GATC	4 cut(s)	188, 589, 824, 857
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	1084
Eco130I	CCWWGG	2 cut(s)	337, 729
Eco24I	GRGCYC	2 cut(s)	976, 1086
Eco47I	GGWCC	2 cut(s)	334, 800
Eco53kI	GAGCTC	1 cut(s)	1084
Eco57I	CTGAAG	4 cut(s)	6, 30, 912, 920
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRI	GAATTC	2 cut(s)	497, 1132
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	337, 729
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	976, 1086
ErhI	CCWWGG	2 cut(s)	337, 729
FaeI	CATG	3 cut(s)	62, 261, 341
FaqI	GGGAC	2 cut(s)	230, 554
FatI	CATG	3 cut(s)	58, 257, 337
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	546, 645
FokI	GGATG	4 cut(s)	804, 965, 1130, 1132
FriOI	GRGCYC	2 cut(s)	976, 1086
Fsp4HI	GCNGC	2 cut(s)	546, 645
FspBI	CTAG	2 cut(s)	128, 593
GluI	GCNGC	2 cut(s)	546, 645
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	195, 506
HapII	CCGG	4 cut(s)	32, 210, 483, 513
Hin1II	CATG	3 cut(s)	62, 261, 341
HindIII	AAGCTT	2 cut(s)	599, 610
HinfI	GANTC	5 cut(s)	254, 862, 915, 1009, 1090
HpaII	CCGG	4 cut(s)	32, 210, 483, 513
HphI	GGTGA	2 cut(s)	506, 1128
Hpy166II	GTNNAC	2 cut(s)	274, 1033
Hpy188I	TCNGA	4 cut(s)	25, 589, 900, 949
Hpy188III	TCNNGA	7 cut(s)	263, 422, 593, 621, 866, 1087, 1094
Hpy8I	GTNNAC	2 cut(s)	274, 1033
HpyAV	CCTTC	5 cut(s)	634, 776, 863, 867, 898
HpyCH4III	ACNGT	4 cut(s)	118, 409, 585, 739
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	17, 469, 545, 635, 647, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 554, 641
HpyF3I	CTNAG	6 cut(s)	168, 619, 768, 854, 932, 1002
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	62, 261, 341
Kzo9I	GATC	4 cut(s)	188, 589, 824, 857
LmnI	GCTCC	3 cut(s)	515, 1003, 1081
Lsp1109I	GCAGC	2 cut(s)	557, 631
LweI	GCATC	2 cut(s)	496, 616
MaeI	CTAG	2 cut(s)	128, 593
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	4 cut(s)	190, 591, 826, 859
MboI	GATC	4 cut(s)	188, 589, 824, 857
MboII	GAAGA	8 cut(s)	29, 59, 470, 665, 695, 913, 1054, 1085
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	976, 1086
MlyI	GAGTC	1 cut(s)	909
MnlI	CCTC	8 cut(s)	57, 96, 347, 350, 763, 943, 955, 1061
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	5 cut(s)	95, 525, 614, 695, 810
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	4 cut(s)	32, 210, 483, 513
MspR9I	CCNGG	3 cut(s)	323, 483, 484
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	2 cut(s)	469, 637
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	867
MwoI	GCNNNNNNNGC	3 cut(s)	206, 554, 641
NciI	CCSGG	2 cut(s)	483, 484
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	188, 589, 824, 857
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	62, 261, 341
NlaIV	GGNNCC	3 cut(s)	6, 375, 878
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	394
NruI	TCGCGA	1 cut(s)	867
NsiI	ATGCAT	1 cut(s)	471
PctI	GAATGC	2 cut(s)	469, 637
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	254, 862, 1009, 1090
PflFI	GACNNNGTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	886
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	547, 646
PleI	GAGTC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	909
PpuMI	RGGWCCY	1 cut(s)	800
PsiI	TTATAA	2 cut(s)	312, 752
Psp124BI	GAGCTC	1 cut(s)	1086
Psp5II	RGGWCCY	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	6, 375, 878
PspPI	GGNCC	2 cut(s)	334, 800
PspPPI	RGGWCCY	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	548
RruI	TCGCGA	1 cut(s)	867
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	95, 525, 614, 695, 810
SatI	GCNGC	2 cut(s)	546, 645
Sau3AI	GATC	4 cut(s)	188, 589, 824, 857
Sau96I	GGNCC	2 cut(s)	334, 800
SchI	GAGTC	1 cut(s)	909
ScrFI	CCNGG	3 cut(s)	323, 483, 484
SduI	GDGCHC	2 cut(s)	976, 1086
SfaNI	GCATC	2 cut(s)	496, 616
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	334, 800
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	3 cut(s)	575, 809, 1085
SmoI	CTYRAG	3 cut(s)	575, 809, 1085
SspMI	CTAG	2 cut(s)	128, 593
SstI	GAGCTC	1 cut(s)	1086
StyD4I	CCNGG	3 cut(s)	321, 481, 482
StyI	CCWWGG	2 cut(s)	337, 729
TaaI	ACNGT	4 cut(s)	118, 409, 585, 739
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	707, 860, 913
TfiI	GAWTC	4 cut(s)	254, 862, 1009, 1090
Tru1I	TTAA	5 cut(s)	95, 525, 614, 695, 810
Tru9I	TTAA	5 cut(s)	95, 525, 614, 695, 810
TscAI	CASTG	2 cut(s)	642, 742
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	545, 644
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	7 cut(s)	42, 246, 293, 395, 431, 696, 1116
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	2 cut(s)	642, 742
Tth111I	GACNNNGTC	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	886
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	334, 800
XagI	CCTNNNNNAGG	1 cut(s)	1025
XapI	RAATTY	5 cut(s)	342, 497, 908, 1106, 1132
XbaI	TCTAGA	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmaI	CCCGGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	2 cut(s)	128, 593
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.