pycom17g20890

Asp/Glu/Hydantoin racemase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
19334596 .. 19336144
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGGAACACTTTGTAATCCGTGCTATTGAAGCCTTAAACAGAAAGGACATAGAGGGAGCACAAAATCTCTTGAGGATCGCACTCAAGGTTCTTCTGGCGAGGGTTGTGAACTCTGTTATTCTTGCGTCCGATGATATGCGAGGTCTTCTTCACCTGGATCTTCTTCTTAAGAAATGCATTGACCCTATGGATGCCTTGGTTAGGTCAACCATAAGCTGGGCTCAGTCTGCTAAAAAAGATGGTTCAAAGAAGAAAAAATTGAAGAAGAAAAAGGATCCTAATGCACCCAAAAGAGCGATGTATGCTTTCATGTTCTTCTCAAATACGGAGAGAGATAATGTCAAGAGAGAGAACCCTGGAATTGCATTTACTGATGTGGGAAGAGTGCTTGGCGAGAAGTGGAGAAAGATGTCTGCGGAGGAAAATGAGCAATATGAAGCAAAGGCTCGTCAAGATAAAGAACGCTACAACGATGAAATTAGTGGCTCCCAACCCAGGAACATAGATTCACGACGACTGCAGATTGGACGAATTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007154 GO:0008023 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022607 GO:0030447 GO:0030466 GO:0030702 GO:0031298 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031334 GO:0031497 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034724 GO:0034728 GO:0035101 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043486 GO:0043596 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044182 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045898 GO:0045899 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051641 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070727 GO:0071103 GO:0071496 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990141 GO:2000112 GO:2000113 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

20.66

Weight (kDa)

9.82

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 93 - 159 2.2e-17 HMG-box domain
HMG_box PF00505 96 - 160 1.4e-19 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021198)

Species Orthologous Gene IDs
malus_domestica MD17G1205100.v1.1
pyrus_communis pycom111g03830 pycom17g20890
rosa_multiflora Rmu_sc0040367.1_g000001 Rmu_ssc0000393.1_g000031

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 216
AciI CCGC 1 cut(s) 416
AclWI GGATC 4 cut(s) 83, 165, 269, 282
AcsI RAATTY 1 cut(s) 531
AfiI CCNNNNNNNGG 3 cut(s) 201, 216, 495
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 29, 246, 262
AjnI CCWGG 3 cut(s) 153, 355, 494
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 4 cut(s) 83, 165, 269, 282
ApoI RAATTY 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 143
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 3 cut(s) 155, 357, 496
BfmI CTRYAG 1 cut(s) 518
BfrI CTTAAG 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 155, 357, 496
BmiI GGNNCC 2 cut(s) 276, 487
BmrFI CCNGG 3 cut(s) 155, 357, 496
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 68, 91
BsaJI CCNNGG 3 cut(s) 195, 355, 494
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 216, 495
BseBI CCWGG 3 cut(s) 155, 357, 496
BseDI CCNNGG 3 cut(s) 195, 355, 494
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 201, 216, 495
BseMII CTCAG 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 201, 216, 495
Bsp1286I GDGCHC 2 cut(s) 61, 223
Bsp143I GATC 3 cut(s) 75, 157, 274
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 276, 487
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 4 cut(s) 83, 165, 269, 282
BspTI CTTAAG 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 195, 355, 494
BssMI GATC 3 cut(s) 75, 157, 274
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 155, 357, 496
Bst6I CTCTTC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 78, 160, 277
BstMBI GATC 3 cut(s) 75, 157, 274
BstMWI GCNNNNNNNGC 3 cut(s) 29, 227, 302
BstNI CCWGG 3 cut(s) 155, 357, 496
BstSCI CCNGG 3 cut(s) 153, 355, 494
BstSFI CTRYAG 1 cut(s) 518
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 157, 274
BstYI RGATCY 2 cut(s) 157, 274
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 196
CseI GACGC 1 cut(s) 114
CviAII CATG 1 cut(s) 310
CviJI RGCY 5 cut(s) 32, 216, 221, 446, 486
CviKI_1 RGCY 5 cut(s) 32, 216, 221, 446, 486
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 77, 159, 276
DpnII GATC 3 cut(s) 75, 157, 274
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 153, 355, 494
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 313
FaiI YATR 8 cut(s) 50, 137, 188, 212, 303, 311, 435, 503
FatI CATG 1 cut(s) 309
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 220
HgaI GACGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 313
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 506
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 109, 207
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 4 cut(s) 70, 343, 452, 510
Hpy8I GTNNAC 2 cut(s) 109, 207
Hpy99I CGWCG 1 cut(s) 516
HpyCH4V TGCA 4 cut(s) 177, 284, 365, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 227, 302
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 3 cut(s) 75, 157, 274
LmnI GCTCC 2 cut(s) 56, 491
LpnPI CCDG 8 cut(s) 80, 140, 167, 202, 342, 369, 481, 508
LweI GCATC 1 cut(s) 181
MalI GATC 3 cut(s) 77, 159, 276
MboI GATC 3 cut(s) 75, 157, 274
MflI RGATCY 2 cut(s) 157, 274
MhlI GDGCHC 2 cut(s) 61, 223
MluCI AATT 4 cut(s) 257, 360, 477, 531
MnlI CCTC 5 cut(s) 46, 66, 93, 134, 412
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 2 cut(s) 35, 168
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 155, 357, 496
MvaI CCWGG 3 cut(s) 155, 357, 496
MwoI GCNNNNNNNGC 3 cut(s) 29, 227, 302
NdeII GATC 3 cut(s) 75, 157, 274
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 2 cut(s) 276, 487
NsiI ATGCAT 1 cut(s) 179
PfeI GAWTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 153, 355, 494
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 3 cut(s) 153, 355, 494
PspN4I GGNNCC 2 cut(s) 276, 487
PstI CTGCAG 1 cut(s) 522
PsuI RGATCY 2 cut(s) 157, 274
SaqAI TTAA 2 cut(s) 35, 168
Sau3AI GATC 3 cut(s) 75, 157, 274
ScrFI CCNGG 3 cut(s) 155, 357, 496
SduI GDGCHC 2 cut(s) 61, 223
SetI ASST 5 cut(s) 90, 145, 156, 206, 218
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 518
SmlI CTYRAG 3 cut(s) 70, 83, 167
SmoI CTYRAG 3 cut(s) 70, 83, 167
Sse9I AATT 4 cut(s) 257, 360, 477, 531
SsiI CCGC 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 153, 355, 494
StyI CCWWGG 1 cut(s) 195
TasI AATT 4 cut(s) 257, 360, 477, 531
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 35, 168
Tru9I TTAA 2 cut(s) 35, 168
TspDTI ATGAA 3 cut(s) 298, 450, 489
TspGWI ACGGA 2 cut(s) 8, 341
Van91I CCANNNNNTGG 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 199
XapI RAATTY 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.