pycom17g22640

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
21030695 .. 21031941
1247 bp
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UTR
Exon/CDS
Intron
pycom17g22640.1

Sequence Viewer

Length: 318 bp
ATGCGTGCCGATAGCTCATCAGTTTCCGGCCACGACCAAACTATTTGTGTCACTGGAGCTGGAGGCTTCATTGCTTCTTGGATGGTGAAGCTATTGCTCGAAAGAGGCTACACTGTTAGAGGAACCTTGAGAAACCCACATGACCCAAAGAATGCTCATTTGAGAGAGCTTGAAGGAGCTGCAGAAAGACTAACTTTGTGCGGAGCTGATCTCCTTGATTATGAGAGCCTCAAAGAAGCCATTAACGGCTGTGATGAGTTTTTCACACAGCATCACCTATCACGGATGATCCAGAACAAATGGTGGAGCCCGCGGTGA

Protein Analysis

106

Amino Acids

11.81

Weight (kDa)

6.5

Isoelectric Point (pI)

17.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 12 - 91 6.1e-09 NmrA-like family
Epimerase PF01370 15 - 87 3e-09 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 17 - 84 3.9e-09 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 19 - 88 4.1e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022573)

Species Orthologous Gene IDs
pyrus_communis pycom17g22640
rosa_multiflora Rmu_ssc0000141.1_g000001
rosa_roxburghii Rroxscaffold_3G00242910
rosa_samantha Rh2BG367800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 313
AciI CCGC 3 cut(s) 201, 311, 313
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 1 cut(s) 28
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 6 cut(s) 15, 59, 91, 169, 179, 206
AluI AGCT 6 cut(s) 15, 59, 91, 169, 179, 206
AlwI GGATC 1 cut(s) 283
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 97, 266
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 124, 308
BmsI GCATC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 2 cut(s) 75, 81
BpuEI CTTGAG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 87, 291
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 27
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 208, 288
BspACI CCGC 3 cut(s) 201, 311, 313
BspANI GGCC 1 cut(s) 30
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 124, 308
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 2 cut(s) 208, 288
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 6, 311
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 87, 291
BstFNI CGCG 1 cut(s) 313
BstKTI GATC 2 cut(s) 211, 291
BstMBI GATC 2 cut(s) 208, 288
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 87, 291
BtsIMutI CAGTG 2 cut(s) 51, 111
Cac8I GCNNGC 2 cut(s) 6, 311
Cfr42I CCGCGG 1 cut(s) 314
CviAII CATG 1 cut(s) 140
DpnI GATC 2 cut(s) 210, 290
DpnII GATC 2 cut(s) 208, 288
EaeI YGGCCR 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 1 cut(s) 143
FaiI YATR 2 cut(s) 141, 222
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 94, 298
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 2 cut(s) 75, 81
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 143
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 97, 266
Hpy188III TCNNGA 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 182
Hsp92II CATG 1 cut(s) 143
KspI CCGCGG 1 cut(s) 314
Kzo9I GATC 2 cut(s) 208, 288
LmnI GCTCC 4 cut(s) 56, 176, 203, 306
LpnPI CCDG 4 cut(s) 39, 40, 45, 305
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 210, 290
MboI GATC 2 cut(s) 208, 288
MhlI GDGCHC 1 cut(s) 311
MnlI CCTC 4 cut(s) 56, 98, 113, 239
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 157
MvnI CGCG 1 cut(s) 313
NdeII GATC 2 cut(s) 208, 288
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 124, 308
NmuCI GTSAC 1 cut(s) 49
PctI GAATGC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 124, 308
PstI CTGCAG 1 cut(s) 184
SacII CCGCGG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 208, 288
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 17, 61, 93, 128, 171, 181, 208, 279
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 180
Sfr303I CCGCGG 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SsiI CCGC 3 cut(s) 201, 311, 313
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 99
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 58, 118
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 2 cut(s) 58, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.