Rh2BG367800

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0022573
Physical Location & Seq
Reverse (-)
51305873 .. 51307203
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG367800.1

Sequence Viewer

Length: 237 bp
ATGCCTGCTGATCAGAGCTCTTCACTTTCCGGCCACGGCCAAACTGTGTGTGTCACCGGGGCCGGAGGCTTCATCGCTTCTTGGTTGGTGAAGCTTCTTTTGGAAAGAGGCTATAATGTTAGAGGAACCGTGAGAAACCCAGTTGTAATCATCGAGTCGAGCATCCTGAAAATGATGCATAATTCGAAGAAAATCCTTATTATACCCTTCATGAGGCGGAGGCGAATCGGGAACTAA

Protein Analysis

78

Amino Acids

8.61

Weight (kDa)

11.33

Isoelectric Point (pI)

72.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022573)

Species Orthologous Gene IDs
pyrus_communis pycom17g22640
rosa_multiflora Rmu_ssc0000141.1_g000001
rosa_roxburghii Rroxscaffold_3G00242910
rosa_samantha Rh2BG367800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AcoI YGGCCR 2 cut(s) 31, 37
AfiI CCNNNNNNNGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 18, 94
AluI AGCT 2 cut(s) 18, 94
Alw21I GWGCWC 1 cut(s) 20
AoxI GGCC 3 cut(s) 31, 37, 60
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 46, 100
AsuII TTCGAA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 52
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 61, 127
BmrFI CCNGG 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 165, 171
BmuI ACTGGG 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 34, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 34, 57
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 140
BshFI GGCC 3 cut(s) 33, 39, 62
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 3 cut(s) 30, 57, 63
BslI CCNNNNNNNGG 1 cut(s) 213
BsnI GGCC 3 cut(s) 33, 39, 62
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 217
BspANI GGCC 3 cut(s) 33, 39, 62
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 61, 127
BspQI GCTCTTC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 185
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 34, 57
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 46, 130
Bst6I CTCTTC 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 56
BsuRI GGCC 3 cut(s) 33, 39, 62
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 18, 33, 39, 62, 69, 94, 111
CviKI_1 RGCY 7 cut(s) 18, 33, 39, 62, 69, 94, 111
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 31, 37
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 114, 180, 203, 212
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 10
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 20
HaeIII GGCC 3 cut(s) 33, 39, 62
HapII CCGG 3 cut(s) 30, 57, 63
Hin1II CATG 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 155, 225
HpaII CCGG 3 cut(s) 30, 57, 63
HphI GGTGA 2 cut(s) 46, 100
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 166, 211, 229
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 46, 130
HpyCH4V TGCA 1 cut(s) 178
Hsp92II CATG 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LguI GCTCTTC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 18, 43, 70, 76, 153, 179
LweI GCATC 2 cut(s) 165, 171
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 12, 199
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 5 cut(s) 59, 101, 116, 207, 213
Mph1103I ATGCAT 1 cut(s) 180
MspI CCGG 3 cut(s) 30, 57, 63
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 61, 127
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 180
NspV TTCGAA 1 cut(s) 185
PagI TCATGA 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 225
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 61, 127
PspPI GGNCC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 20
SetI ASST 2 cut(s) 20, 96
SfaNI GCATC 2 cut(s) 165, 171
SfuI TTCGAA 1 cut(s) 185
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 217
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 46, 130
TaqI TCGA 3 cut(s) 153, 158, 185
TasI AATT 1 cut(s) 181
TfiI GAWTC 1 cut(s) 225
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 61, 199
XagI CCTNNNNNAGG 1 cut(s) 211
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.