Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000141.1

Orthogroup ID

OG0022573

Physical Location & Seq

Genomic Coordinates Forward (+)

707 .. 1813

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgcctgctgatcagagctcttcactttccggccacggccaaactgtgtgtgtcaccggggccggaggcttcatcgcttcttggttggtgaagcttcttctggaaagaggctataatgttagaggaacctcctggtgtcacccaaaattgccgttaattgatgacatggcagtgtccagctggtcgccgctctacaaccagcttgacgtacgtttcaaagaactggggcgctctctctccttcgtcgccgctctgcaaccactgccgcgattccccttgtctaccaccattgacctctcggttgtccgacgactttatcccagccaccacgtcgtccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

113

Amino Acids

12.51

Weight (kDa)

9.51

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022573)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g22640
rosa_multiflora	Rmu_ssc0000141.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242910
rosa_samantha	Rh2BG367800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	190, 251
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	268
AciI	CCGC	3 cut(s)	188, 249, 266
AcoI	YGGCCR	2 cut(s)	31, 37
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	4 cut(s)	18, 94, 180, 202
AluI	AGCT	4 cut(s)	18, 94, 180, 202
Alw21I	GWGCWC	1 cut(s)	20
AoxI	GGCC	3 cut(s)	31, 37, 60
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	46, 100, 131
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	52, 136
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	3 cut(s)	188, 249, 266
BlsI	GCNGC	3 cut(s)	189, 250, 267
Bme1390I	CCNGG	2 cut(s)	58, 133
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	61, 127
BmrFI	CCNGG	2 cut(s)	58, 133
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	34, 57
BsaWI	WCCGGW	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	34, 57
BseNI	ACTGG	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	3 cut(s)	33, 39, 62
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	4 cut(s)	30, 57, 63, 337
BsiWI	CGTACG	1 cut(s)	208
BsnI	GGCC	3 cut(s)	33, 39, 62
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	3 cut(s)	188, 249, 266
BspANI	GGCC	3 cut(s)	33, 39, 62
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	61, 127
BspQI	GCTCTTC	1 cut(s)	25
BsrBI	CCGCTC	2 cut(s)	190, 251
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	34, 57
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	56, 131
BstUI	CGCG	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	33, 39, 62
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	2 cut(s)	177, 260
BtsIMutI	CAGTG	2 cut(s)	177, 260
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	31, 37
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	114, 167
FatI	CATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	188, 249, 266
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	188, 249, 266
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	188, 249, 266
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	33, 39, 62
HapII	CCGG	4 cut(s)	30, 57, 63, 337
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	4 cut(s)	30, 57, 63, 337
HphI	GGTGA	3 cut(s)	46, 100, 131
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	15, 308
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	3 cut(s)	248, 312, 335
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	3 cut(s)	207, 211, 330
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpySE526I	ACGT	3 cut(s)	207, 211, 330
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LguI	GCTCTTC	1 cut(s)	25
MaeII	ACGT	3 cut(s)	207, 211, 330
MaeIII	GTNAC	2 cut(s)	52, 137
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	2 cut(s)	190, 251
MboI	GATC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	12, 89
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	146, 156
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	59, 101, 116, 139, 305
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	4 cut(s)	30, 57, 63, 337
MspR9I	CCNGG	2 cut(s)	58, 133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	61, 127
NmuCI	GTSAC	2 cut(s)	52, 137
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	270
Pfl23II	CGTACG	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	189, 250, 267
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	131
PspLI	CGTACG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	61, 127
PspPI	GGNCC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	188, 249, 266
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	58, 133
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	9 cut(s)	20, 96, 131, 182, 204, 210, 214, 297, 333
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	146, 156
SsiI	CCGC	3 cut(s)	188, 249, 266
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	56, 131
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	3 cut(s)	210, 214, 333
TasI	AATT	2 cut(s)	146, 156
TauI	GCSGC	3 cut(s)	190, 251, 268
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	177, 267
TseFI	GTSAC	2 cut(s)	52, 137
Tsp45I	GTSAC	2 cut(s)	52, 137
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	177, 267
XmiI	GTMKAC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.