pycom17g23610

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
21908366 .. 21908809
444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGTGCTCTTCAGAGGGTGATTGCAGGCCTTTGGGCTTTCTACTGGGCCTTCCGTTCGCCCTTCTCTCCCTCCTCATCTCCGTCGTCGGCATCGTCATCTGGATCGTCGGGTTGTTGCTGACGTGCATATGCCCGTGCTGCTTGTGCGTGACGGTGATGGTGGAGCTGGCTCTGCAGTTGGTGAAAGCTCCAATTCATGTGATGGAATGGTTCACTTCTCAAATCCCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.34

Weight (kDa)

4.83

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014990)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 2 cut(s) 166, 188
AluI AGCT 2 cut(s) 166, 188
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 110
AoxI GGCC 2 cut(s) 26, 46
ApeKI GCWGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 29, 166, 193
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 151, 196
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 28, 48
BsiHKAI GWGCWC 1 cut(s) 8
BsnI GGCC 2 cut(s) 28, 48
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 2 cut(s) 28, 48
BspMAI CTGCAG 1 cut(s) 177
BspPI GGATC 1 cut(s) 110
BspQI GCTCTTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 48
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 26, 168
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 138, 144, 172
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 28, 48
BtrI CACGTC 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 26, 168
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 1 cut(s) 197
CviJI RGCY 6 cut(s) 28, 36, 48, 166, 170, 188
CviKI_1 RGCY 6 cut(s) 28, 36, 48, 166, 170, 188
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 28
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 128, 130, 198
FatI CATG 1 cut(s) 196
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 28, 48
Hin1II CATG 1 cut(s) 200
HphI GGTGA 3 cut(s) 29, 166, 193
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 3 cut(s) 86, 89, 110
HpyAV CCTTC 2 cut(s) 59, 71
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 24, 126, 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 144, 172
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 102
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 2 cut(s) 163, 193
LpnPI CCDG 4 cut(s) 10, 29, 85, 152
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 192
MnlI CCTC 3 cut(s) 7, 80, 83
MseI TTAA 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 138, 144, 172
NdeI CATATG 1 cut(s) 128
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 148
PceI AGGCCT 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 232
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 125, 168, 190
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 28
StuI AGGCCT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 125
TasI AATT 1 cut(s) 192
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 2 cut(s) 42, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.