Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017885

Physical Location & Seq

Genomic Coordinates Reverse (-)

22940754 .. 22941572

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACCATTTCAATGTTCAGCAGCAGAACGCCTCTTTCGTGGGCTGTGAAGGCATCAGAGGTTCTGACTTGATGTTTGACACCAAGGAGCCTCTGGTTTGCCCCAAGCCCAGGCGAGTTGGGATTTTGTCTAACAACCCCATTAGGCCCGTGCGATGGCAGATGAGTCATCAACCCGAGTTATGCGACTCAAAAGCTGGGGCAGAGCTTCTGGACCTTATTCTCAGGAAGGAGGGTTATGGGTTGGAGCAATCATCCAATGAGGTTGCCTTATCGCCCCCATATTTTTGCGTTTCTCCTCCCAGTAGGGCTGCTAACCCATTAATTCAAGATGCACGATTTGGAGATGAGAAGACCACTCCTGTTTCGGCATTGCCTGTTCCATCTCCATCAACTTTATCGTCGCCACGCAAAGCAGGTTGTGTGAGAATGAAGTATGGGCTTAAACCTGCTGCAGTTAGAGTAGAGGGATTTGATTGTCTCAATAGGGATCGCCAAAACTCCCGCATCCCAGCATTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.15

Weight (kDa)

9.0

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02555 AT3G02555
malus_domestica	MD09G1252200.v1.1 MD17G1244500.v1.1
prunus_persica	Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1
pyrus_communis	pycom09g16860 pycom17g24730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	407, 457
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	111, 156
AgsI	TTSAA	2 cut(s)	13, 329
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	197, 208
AluI	AGCT	2 cut(s)	197, 208
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	22, 311, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AseI	ATTAAT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	147, 214
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	34, 298, 439
BccI	CCATC	3 cut(s)	150, 391, 397
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	2 cut(s)	407, 457
BisI	GCNGC	3 cut(s)	23, 312, 453
BlsI	GCNGC	3 cut(s)	24, 313, 454
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	147, 214
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	3 cut(s)	63, 322, 516
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	84, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 156
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	84, 110
BseGI	GGATG	2 cut(s)	254, 507
BseLI	CCNNNNNNNGG	2 cut(s)	111, 156
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	34, 298, 439
BseYI	CCCAGC	2 cut(s)	197, 511
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	111, 156
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	2 cut(s)	407, 457
BspPI	GGATC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	84, 110
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	254, 507
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	34, 298, 439
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	254, 507
BveI	ACCTGC	2 cut(s)	407, 457
Cfr13I	GGNCC	2 cut(s)	147, 214
CviJI	RGCY	8 cut(s)	45, 91, 109, 148, 197, 208, 311, 442
CviKI_1	RGCY	8 cut(s)	45, 91, 109, 148, 197, 208, 311, 442
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	4 cut(s)	184, 240, 283, 438
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	3 cut(s)	23, 312, 453
FokI	GGATG	2 cut(s)	241, 494
Fsp4HI	GCNGC	3 cut(s)	23, 312, 453
GluI	GCNGC	3 cut(s)	23, 312, 453
GsaI	CCCAGC	2 cut(s)	201, 515
HaeIII	GGCC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	166, 188
Hpy188I	TCNGA	2 cut(s)	59, 67
Hpy188III	TCNNGA	3 cut(s)	212, 226, 329
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	44, 223
HpyCH4V	TGCA	2 cut(s)	335, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	88, 247
Lsp1109I	GCAGC	3 cut(s)	34, 298, 439
LweI	GCATC	3 cut(s)	63, 322, 516
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	1 cut(s)	364
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	175, 182
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	43, 53, 102, 226, 256, 309, 460
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	323, 444
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	1 cut(s)	490
NlaIV	GGNNCC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	24, 313, 454
PleI	GAGTC	2 cut(s)	174, 182
PpsI	GAGTC	2 cut(s)	174, 182
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	2 cut(s)	197, 511
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	147, 214
PstI	CTGCAG	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	323, 444
SatI	GCNGC	3 cut(s)	23, 312, 453
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	2 cut(s)	147, 214
SchI	GAGTC	2 cut(s)	175, 182
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	7 cut(s)	64, 199, 210, 219, 267, 421, 451
SfaNI	GCATC	3 cut(s)	63, 322, 516
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	84
TasI	AATT	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	323, 444
Tru9I	TTAA	2 cut(s)	323, 444
TseI	GCWGC	3 cut(s)	22, 311, 452
TspDTI	ATGAA	2 cut(s)	17, 446
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.