pycom17g24770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0018740
Physical Location & Seq
Forward (+)
22997411 .. 22998540
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGGCCTACCTGTTTGAAGACAGCAGGAGAATAATTTCACTCCCTCAACTACTTCCACCGAGACCTGCCTGCCTGCCTGCCTTGGTTGCTTTCAGTTCTCTCTTCACTGTTGTCCAAATCAACTCCATCTTCTTCATTGGTTCCATCAACAACAAAAAAACAATCTTGAGTTCACCACTTATCTTTGTGTGTGGATATGAATTCCCTGTTTTCTTGGTTTTTTCTAATCCCAACTTCTTCAGTAGTCTGAGTATTTTCTGGGTAGTTGAGCTGTATTCAGATAACCCTAGCAGCATGGGCGTCATGAGTCCTAGGATTTCATTCTCCTATGATCTCTGCCAATCTGATGTTGCATCTATGGAACAGCAAACCCACCCTCCCAGATCCAATTCTTCATCCTCAAGAATTATGAACTCGAGCATGGAGTTCGACTTCTGCGTCCGTGAGAGCTTCGAGCAGGAGTCCTCCTCCGCGGATGAACTTTTCTCCGATGGGAAAATGATCCCGACTGAGATCAAGAAAAAGTCTTCCCATCAGCCAAAGCAGTTGGACCAAATCATGCCTCCATTGCCAACAGCGCCGACTACTAACCAACGTGACACAAAAATAACTACGGCGAAAGAGAGCAAGAACACGACGAGTAGTAGTAGTGAAGGTGATGAGAAGCAGAACTCAAAGTCTTTCTGGAGTTTCAAGAGGAGTAGCAGCTGTGGAAGTGGATATGGCAGAACCTTATGTCCTTTGCCGCTTTTGTCAAGAAGCAATTCAACCGGTTCTTCATCATCATCAAGTGCGAAGCGATCGCTGTTTTCAAAAGAGGGTCAGAATCAGAAGCAGAATTCCAATAAATCTGCATCCAAAAAGCCCTCCTCCTCCTCCTCACAATATTCTGCTGCTTCAATGAGCAATTACCAAAAGCCTCCATTGAAAAAGGGTCAATATGGATCGATATGGGGGCAATGCTGCTCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

35.71

Weight (kDa)

9.2

Isoelectric Point (pI)

64.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018740)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67050 AT5G38320 AT5G38320
malus_domestica MD09G1253400.v1.1 MD17G1245300.v1.1
prunus_persica Prupe.3G143400_v2.0.a1
pyrus_communis pycom09g16930 pycom09g16940 pycom17g24770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 73
AccII CGCG 1 cut(s) 473
AciI CCGC 3 cut(s) 471, 473, 746
AclWI GGATC 3 cut(s) 378, 496, 952
AcsI RAATTY 2 cut(s) 200, 838
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 300
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 6 cut(s) 17, 694, 768, 813, 900, 928
AloI GAACNNNNNNTCC 2 cut(s) 721, 753
AluBI AGCT 3 cut(s) 271, 450, 708
AluI AGCT 3 cut(s) 271, 450, 708
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 3 cut(s) 378, 496, 952
Ama87I CYCGRG 1 cut(s) 415
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 291, 705, 893, 963
ApoI RAATTY 2 cut(s) 200, 838
AsiGI ACCGGT 1 cut(s) 770
AsiSI GCGATCGC 1 cut(s) 803
Asp700I GAANNNNTTC 2 cut(s) 34, 763
AspA2I CCTAGG 1 cut(s) 311
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 165, 668
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 1 cut(s) 550
AvrII CCTAGG 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 24, 519
BbvI GCAGC 4 cut(s) 303, 717, 880, 950
BccI CCATC 4 cut(s) 134, 152, 485, 540
BceAI ACGGC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 288, 312
BfoI RGCGCY 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 5 cut(s) 292, 706, 746, 894, 964
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 5 cut(s) 293, 707, 747, 895, 965
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 362, 863
BpiI GAAGAC 2 cut(s) 24, 519
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 2 cut(s) 706, 952
BpuEI CTTGAG 2 cut(s) 187, 385
Bsa29I ATCGAT 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 81, 311, 471
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 566, 965
BseCI ATCGAT 1 cut(s) 947
BseDI CCNNGG 3 cut(s) 81, 311, 471
BseGI GGATG 3 cut(s) 395, 481, 854
BseMI GCAATG 2 cut(s) 566, 965
BseMII CTCAG 2 cut(s) 239, 501
BseNI ACTGG 1 cut(s) 969
BseRI GAGGAG 6 cut(s) 457, 712, 859, 862, 865, 868
BseXI GCAGC 4 cut(s) 303, 717, 880, 950
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 803
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 770
BshVI ATCGAT 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 803
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 1 cut(s) 771
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 415
Bsp143I GATC 6 cut(s) 331, 383, 501, 513, 800, 944
BspACI CCGC 3 cut(s) 471, 473, 746
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 240, 502
BspDI ATCGAT 1 cut(s) 947
BspFNI CGCG 1 cut(s) 473
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 3 cut(s) 378, 496, 952
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 566, 965
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 1 cut(s) 969
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 81, 311, 471
BssMI GATC 6 cut(s) 331, 383, 501, 513, 800, 944
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 81, 311
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 70, 74, 78
BstDEI CTNAG 2 cut(s) 248, 510
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 395, 481, 854
BstFNI CGCG 1 cut(s) 473
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 6 cut(s) 334, 386, 504, 516, 803, 947
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 6 cut(s) 331, 383, 501, 513, 800, 944
BstMCI CGRYCG 1 cut(s) 803
BstMWI GCNNNNNNNGC 4 cut(s) 86, 297, 568, 577
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 4 cut(s) 303, 717, 880, 950
BstV2I GAAGAC 2 cut(s) 24, 519
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
Bsu15I ATCGAT 1 cut(s) 947
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 395, 481, 854
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 70, 74, 78
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 1 cut(s) 550
Cfr42I CCGCGG 1 cut(s) 474
ClaI ATCGAT 1 cut(s) 947
CseI GACGC 2 cut(s) 289, 427
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 4 cut(s) 295, 304, 421, 559
CviJI RGCY 7 cut(s) 5, 271, 450, 538, 708, 865, 919
CviKI_1 RGCY 7 cut(s) 5, 271, 450, 538, 708, 865, 919
DdeI CTNAG 2 cut(s) 248, 510
DpnI GATC 6 cut(s) 333, 385, 503, 515, 802, 946
DpnII GATC 6 cut(s) 331, 383, 501, 513, 800, 944
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 81, 311
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 415
EcoRI GAATTC 2 cut(s) 200, 838
EcoT14I CCWWGG 2 cut(s) 81, 311
ErhI CCWWGG 2 cut(s) 81, 311
FaeI CATG 4 cut(s) 298, 307, 424, 562
FatI CATG 4 cut(s) 294, 303, 420, 558
Fnu4HI GCNGC 5 cut(s) 292, 706, 746, 894, 964
FokI GGATG 3 cut(s) 382, 488, 841
Fsp4HI GCNGC 5 cut(s) 292, 706, 746, 894, 964
FspBI CTAG 2 cut(s) 288, 312
GlaI GCGC 1 cut(s) 579
GluI GCNGC 5 cut(s) 292, 706, 746, 894, 964
GsuI CTGGAG 2 cut(s) 706, 952
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 771
HgaI GACGC 2 cut(s) 289, 427
HhaI GCGC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 4 cut(s) 298, 307, 424, 562
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 3 cut(s) 307, 461, 826
HpaII CCGG 1 cut(s) 771
HphI GGTGA 2 cut(s) 165, 668
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 6 cut(s) 249, 280, 346, 490, 825, 831
Hpy188III TCNNGA 8 cut(s) 166, 304, 402, 505, 517, 685, 694, 756
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 640
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 2 cut(s) 353, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 297, 568, 577
HpyF3I CTNAG 2 cut(s) 248, 510
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 4 cut(s) 298, 307, 424, 562
HspAI GCGC 1 cut(s) 578
KspI CCGCGG 1 cut(s) 474
Kzo9I GATC 6 cut(s) 331, 383, 501, 513, 800, 944
LmnI GCTCC 1 cut(s) 971
Lsp1109I GCAGC 4 cut(s) 303, 717, 880, 950
LweI GCATC 2 cut(s) 362, 863
MaeI CTAG 2 cut(s) 288, 312
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 596
MalI GATC 6 cut(s) 333, 385, 503, 515, 802, 946
MboI GATC 6 cut(s) 331, 383, 501, 513, 800, 944
MboII GAAGA 8 cut(s) 29, 94, 121, 124, 229, 384, 519, 768
MflI RGATCY 1 cut(s) 383
MluCI AATT 7 cut(s) 33, 200, 388, 405, 763, 838, 907
MlyI GAGTC 2 cut(s) 316, 470
MmeI TCCRAC 1 cut(s) 528
MroXI GAANNNNTTC 2 cut(s) 34, 763
MspA1I CMGCKG 2 cut(s) 473, 708
MspI CCGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 86, 297, 568, 577
NdeII GATC 6 cut(s) 331, 383, 501, 513, 800, 944
NlaIII CATG 4 cut(s) 298, 307, 424, 562
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 415
PagI TCATGA 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PdmI GAANNNNTTC 2 cut(s) 34, 763
PfeI GAWTC 1 cut(s) 826
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 5 cut(s) 293, 707, 747, 895, 965
Ple19I CGATCG 1 cut(s) 803
PleI GAGTC 2 cut(s) 315, 469
PpsI GAGTC 2 cut(s) 315, 469
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 550
PspXI VCTCGAGB 1 cut(s) 415
PsuI RGATCY 1 cut(s) 383
PvuI CGATCG 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 708
RgaI GCGATCGC 1 cut(s) 803
SacII CCGCGG 1 cut(s) 474
SatI GCNGC 5 cut(s) 292, 706, 746, 894, 964
Sau3AI GATC 6 cut(s) 331, 383, 501, 513, 800, 944
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 2 cut(s) 316, 470
SetI ASST 8 cut(s) 12, 67, 273, 452, 598, 658, 710, 734
SfaAI GCGATCGC 1 cut(s) 803
SfaNI GCATC 2 cut(s) 362, 863
Sfr274I CTCGAG 1 cut(s) 415
Sfr303I CCGCGG 1 cut(s) 474
SgfI GCGATCGC 1 cut(s) 803
SgrBI CCGCGG 1 cut(s) 474
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 166, 400, 415
SmoI CTYRAG 3 cut(s) 166, 400, 415
Sse9I AATT 7 cut(s) 33, 200, 388, 405, 763, 838, 907
SsiI CCGC 3 cut(s) 471, 473, 746
SspI AATATT 1 cut(s) 887
SspMI CTAG 2 cut(s) 288, 312
StyI CCWWGG 2 cut(s) 81, 311
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 598
TaqI TCGA 4 cut(s) 416, 429, 453, 947
TasI AATT 7 cut(s) 33, 200, 388, 405, 763, 838, 907
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 1 cut(s) 826
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 4 cut(s) 291, 705, 893, 963
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 7 cut(s) 124, 213, 309, 384, 425, 492, 768
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 550
XapI RAATTY 2 cut(s) 200, 838
XhoI CTCGAG 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 311
XmnI GAANNNNTTC 2 cut(s) 34, 763
XspI CTAG 2 cut(s) 288, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.