Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0018722

Physical Location & Seq

Genomic Coordinates Reverse (-)

24578223 .. 24578984

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAACACATATATTGACCTTGAAGTAGAAGCCTCGTCGGCAATTGACTCTGATGTTAGCAGCCAAATTGCTTCTAACACCTCCAACGACAGCGCGGCTAACTCTTTCCATGTTTCAAATCCCATTGCAGCTCAGCAAGTATTGGAGCCTGCAGTTTCCCTTGACTTAACTCTTAGCTTCAACAATGAGGACTTGGGAGGAAGTGATTCGATAGGACACTCATTGTTGAGCACAAGTGAGAGCAGCAATGAGCCTGCATTTCAGAACACAAATTCTGCGACTCCAAGACTTTTTTCTTGTAATTACTGTCAAAGCAAATTCTTGAGCTCACAGGCACTTGGTGGACACCAAAATGCACACAAGAAAGAGAGGACACTGGCAAAGTGCGCATTGCGAATGAGTATTTTCTCTGAGAATTACGTAAGCCTGGCATCTTTGCCTCTGCACGGACCTTCATTTAGGTCACTAGGTATCAGACCACACTCATCAGTGCATCAAGGATTTGCACCACCAATGAGGCCTCCTGAGACCAGAAGCGGCGCAGGATTTGAACACGGGTATATGGGGGTACCAATTTTATTGGTGAATGATGGGGCGCAGCTGTTATGGCCTGGTAGTTTCCGCCAGGCTAGCGCTGCCGAGACAAGTAACACTACTCACCCAAGTTTTGTACTGACTCATGAAAGTTCAAATTTGAATTTTGTAGACGTGAGTCCGCCGGTGGATGCCATAGACCACTCTGCACCAGATCGATCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

27.04

Weight (kDa)

5.43

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66140
malus_domestica	MD09G1266200.v1.1 MD17G1262500.v1.1
prunus_persica	Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1
pyrus_communis	pycom09g17940 pycom17g26250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	388
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	95, 537, 622, 716
AcsI	RAATTY	4 cut(s)	271, 317, 691, 697
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	570, 672
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	23, 117, 181, 551, 690, 697
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	3 cut(s)	426, 610, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	4 cut(s)	131, 177, 327, 601
AluI	AGCT	4 cut(s)	131, 177, 327, 601
Alw21I	GWGCWC	2 cut(s)	233, 329
Alw26I	GTCTC	2 cut(s)	521, 635
Aor51HI	AGCGCT	1 cut(s)	634
AoxI	GGCC	2 cut(s)	518, 608
ApeKI	GCWGC	5 cut(s)	60, 128, 243, 598, 635
ApoI	RAATTY	4 cut(s)	271, 317, 691, 697
Asp700I	GAANNNNTTC	1 cut(s)	205
Asp718I	GGTACC	1 cut(s)	568
AspLEI	GCGC	5 cut(s)	95, 389, 542, 598, 635
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	595, 650
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	233, 329
BbvI	GCAGC	5 cut(s)	72, 140, 255, 610, 622
BccI	CCATC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	428, 612, 626
BcoDI	GTCTC	2 cut(s)	521, 635
BfaI	CTAG	2 cut(s)	467, 630
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	7 cut(s)	61, 96, 129, 244, 538, 599, 636
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	7 cut(s)	62, 97, 130, 245, 539, 600, 637
Bme1390I	CCNGG	3 cut(s)	428, 612, 626
Bme18I	GGWCC	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	147, 570
BmrFI	CCNGG	3 cut(s)	428, 612, 626
BmsI	GCATC	3 cut(s)	440, 502, 715
BmtI	GCTAGC	1 cut(s)	633
BoxI	GACNNNNGTC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	751
BsaAI	YACGTR	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	3 cut(s)	123, 253, 389
BseBI	CCWGG	3 cut(s)	428, 612, 626
BseCI	ATCGAT	1 cut(s)	751
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	3 cut(s)	123, 253, 389
BseMII	CTCAG	3 cut(s)	146, 402, 516
BseNI	ACTGG	1 cut(s)	381
BseXI	GCAGC	5 cut(s)	72, 140, 255, 610, 622
BsgI	GTGCAG	2 cut(s)	428, 726
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	520, 610
BshNI	GGYRCC	1 cut(s)	568
BshVI	ATCGAT	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	233, 329
BsiSI	CCGG	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	2 cut(s)	521, 635
BsnI	GGCC	2 cut(s)	520, 610
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	233, 329
Bsp143I	GATC	2 cut(s)	748, 752
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	4 cut(s)	95, 537, 622, 716
BspANI	GGCC	2 cut(s)	520, 610
BspCNI	CTCAG	3 cut(s)	145, 403, 517
BspDI	ATCGAT	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	147, 570
BspMAI	CTGCAG	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	3 cut(s)	123, 253, 389
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	718
BssMI	GATC	2 cut(s)	748, 752
Bst2UI	CCWGG	3 cut(s)	428, 612, 626
Bst4CI	ACNGT	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	150, 255, 631
BstDEI	CTNAG	4 cut(s)	132, 173, 411, 525
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	5 cut(s)	95, 389, 542, 598, 635
BstKTI	GATC	2 cut(s)	751, 755
BstMAI	GTCTC	2 cut(s)	521, 635
BstMBI	GATC	2 cut(s)	748, 752
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 386, 607, 630, 635
BstNI	CCWGG	3 cut(s)	428, 612, 626
BstPAI	GACNNNNGTC	1 cut(s)	711
BstSCI	CCNGG	3 cut(s)	426, 610, 624
BstSFI	CTRYAG	1 cut(s)	150
BstSNI	TACGTA	1 cut(s)	421
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	5 cut(s)	72, 140, 255, 610, 622
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	520, 610
BsuTUI	ATCGAT	1 cut(s)	751
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	374, 495, 757
Cac8I	GCNNGC	3 cut(s)	150, 255, 631
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	5 cut(s)	95, 389, 542, 598, 635
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	569, 671
CviAII	CATG	2 cut(s)	110, 680
CviQI	GTAC	2 cut(s)	569, 671
DdeI	CTNAG	4 cut(s)	132, 173, 411, 525
DpnI	GATC	2 cut(s)	750, 754
DpnII	GATC	2 cut(s)	748, 752
DraIII	CACNNNGTG	1 cut(s)	341
EciI	GGCGGA	2 cut(s)	611, 705
Ecl136II	GAGCTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	421
Eco147I	AGGCCT	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	449
Eco47III	AGCGCT	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoRII	CCWGG	3 cut(s)	426, 610, 624
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	113, 683
FaiI	YATR	8 cut(s)	10, 12, 111, 561, 563, 607, 681, 731
FatI	CATG	2 cut(s)	109, 679
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	7 cut(s)	61, 96, 129, 244, 538, 599, 636
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	7 cut(s)	61, 96, 129, 244, 538, 599, 636
FspAI	RTGCGCAY	1 cut(s)	388
FspBI	CTAG	2 cut(s)	467, 630
FspI	TGCGCA	1 cut(s)	388
GlaI	GCGC	5 cut(s)	94, 388, 541, 597, 634
GluI	GCNGC	7 cut(s)	61, 96, 129, 244, 538, 599, 636
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	520, 610
HapII	CCGG	1 cut(s)	719
HhaI	GCGC	5 cut(s)	95, 389, 542, 598, 635
Hin1II	CATG	2 cut(s)	113, 683
Hin6I	GCGC	5 cut(s)	93, 387, 540, 596, 633
HinP1I	GCGC	5 cut(s)	93, 387, 540, 596, 633
HinfI	GANTC	5 cut(s)	47, 206, 280, 676, 712
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	2 cut(s)	595, 650
Hpy166II	GTNNAC	2 cut(s)	344, 706
Hpy188I	TCNGA	4 cut(s)	52, 264, 412, 476
Hpy188III	TCNNGA	3 cut(s)	322, 524, 680
Hpy8I	GTNNAC	2 cut(s)	344, 706
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	420, 708
HpyCH4V	TGCA	8 cut(s)	128, 152, 257, 356, 445, 493, 506, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 386, 607, 630, 635
HpyF3I	CTNAG	4 cut(s)	132, 173, 411, 525
HpySE526I	ACGT	2 cut(s)	420, 708
Hsp92II	CATG	2 cut(s)	113, 683
HspAI	GCGC	5 cut(s)	93, 387, 540, 596, 633
KpnI	GGTACC	1 cut(s)	572
Kzo9I	GATC	2 cut(s)	748, 752
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	5 cut(s)	72, 140, 255, 610, 622
LweI	GCATC	3 cut(s)	440, 502, 715
MaeI	CTAG	2 cut(s)	467, 630
MaeII	ACGT	2 cut(s)	420, 708
MaeIII	GTNAC	2 cut(s)	462, 647
MalI	GATC	2 cut(s)	750, 754
MboI	GATC	2 cut(s)	748, 752
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	233, 329
MluCI	AATT	9 cut(s)	42, 66, 271, 301, 317, 415, 573, 691, 697
MlyI	GAGTC	4 cut(s)	41, 274, 670, 721
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	43, 91, 181, 191, 363, 450, 510, 531
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	3 cut(s)	428, 612, 626
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	3 cut(s)	428, 612, 626
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	38, 386, 607, 630, 635
NdeII	GATC	2 cut(s)	748, 752
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	2 cut(s)	113, 683
NlaIV	GGNNCC	2 cut(s)	147, 570
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	462
NsbI	TGCGCA	1 cut(s)	388
PagI	TCATGA	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	7 cut(s)	62, 97, 130, 245, 539, 600, 637
PleI	GAGTC	4 cut(s)	41, 274, 670, 720
PpsI	GAGTC	4 cut(s)	41, 274, 670, 720
Ppu21I	YACGTR	1 cut(s)	421
PshAI	GACNNNNGTC	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	426, 610, 624
PspGI	CCWGG	3 cut(s)	426, 610, 624
PspN4I	GGNNCC	2 cut(s)	147, 570
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	570, 672
RsaNI	GTAC	2 cut(s)	569, 671
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	7 cut(s)	61, 96, 129, 244, 538, 599, 636
Sau3AI	GATC	2 cut(s)	748, 752
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	4 cut(s)	41, 274, 670, 721
ScrFI	CCNGG	3 cut(s)	428, 612, 626
SduI	GDGCHC	2 cut(s)	233, 329
SfaNI	GCATC	3 cut(s)	440, 502, 715
SfcI	CTRYAG	1 cut(s)	150
SgrAI	CRCCGGYG	1 cut(s)	718
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SnaBI	TACGTA	1 cut(s)	421
Sse9I	AATT	9 cut(s)	42, 66, 271, 301, 317, 415, 573, 691, 697
SseBI	AGGCCT	1 cut(s)	520
SsiI	CCGC	4 cut(s)	95, 537, 622, 716
SspMI	CTAG	2 cut(s)	467, 630
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	426, 610, 624
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	423, 711
TaqI	TCGA	2 cut(s)	209, 751
TasI	AATT	9 cut(s)	42, 66, 271, 301, 317, 415, 573, 691, 697
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	2 cut(s)	98, 540
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	2 cut(s)	381, 495
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	5 cut(s)	60, 128, 243, 598, 635
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	3 cut(s)	17, 444, 696
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	381, 495
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	4 cut(s)	271, 317, 691, 697
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	467, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.