pycom17g27110

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0019763
Physical Location & Seq
Forward (+)
25380409 .. 25382552
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGGATTACCTGTATTTTACTTCAATTTCAGCAGCAGCAGCTTCAACCTTCCCTCTCTGCATTACCAACGTTGCAGTACTACTTCTTGCAGCTATATCGTCGTTGATTTTTGCATATTTTTTCATCACTTATGCAGTCCATGGTTACAGAAACAAGAACTGGAAAAACTCGCTGCTGGGACCTGTTGGATGGCCTATACTTGGGAGCCTTCCTCACCTCAGCATTCGCCTGCATGAAGATTTATTTAAGCTATCAAAAATTAATGGTCCACTCTTCAGCCTAAAATTGGGTTCACACTTTCGGCAACACGATGATGTTTTCTGCAACCATATCGTCACTGAGGCCTTCGGGATCATGTCATACGAAGGGCTGTCCGTTATTTTTTCGGTGGGTACGCTGTGGAGAGTGCTAAGAAGAATATTGGCGGAAAAGGTGTGCTCTCTTAAGGCCCTGAAGACTTTTGAACCAAATCGCAAGATGTATACTGCTCGGATAAACTGGCGGGTTCATGGGGGGTTTGTTGTAGAGACCGACATTGTGAATCTACCTTACCTTCAAGCGGCAGTGAAAGAAGTTTTCCGGCTCCACCCTGCAGCCCCAGTCATACAGCGTTGCACAAACGCGGCATGTGAGTTTTCCGAGTATCATATTCCTAAGCTTTGCTTTGCTCTGGTATATGTTTGGGCGATTGTGAGGGACCCGAGTATTTGGGAAGAACCTTTCAAATTCAAACCAGAAAGGTTCATTGGTTCGAGCATCGATGTCAAAGGCCAAGACTTCGCTCTGCTGCCTTTTGGGAGGGAGAGAAGGGTATGCGCGGGATGGCCCCTTGCTCATCGCACGCTGCACTTTTACTTGGCAGCGATGCTCCATGCTTTTGAATGGGAATGTGCTCCTGATATCTTGGACAATATGGAAGAAAAAGTGGGACGTACAATTCAAAAGGACAGAGTTCGGCTGTCGACTTCTGTTTGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

327

Amino Acids

37.22

Weight (kDa)

9.0

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 176 - 311 1.4e-35 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019763)

Species Orthologous Gene IDs
malus_domestica MD03G1101200.v1.1 MD03G1101800.v1.1 MD09G1282400.v1.1 MD09G1282500.v1.1
prunus_persica Prupe.8G008200_v2.0.a1
pyrus_communis pycom09g19040 pycom17g27110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 482, 962
AccII CGCG 2 cut(s) 623, 818
AciI CCGC 5 cut(s) 425, 502, 560, 623, 818
AclI AACGTT 1 cut(s) 69
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 2 cut(s) 259, 473
AfaI GTAC 3 cut(s) 78, 394, 934
AfiI CCNNNNNNNGG 3 cut(s) 200, 286, 559
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 8 cut(s) 24, 45, 464, 557, 724, 730, 881, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 729, 761
AluBI AGCT 4 cut(s) 41, 92, 250, 658
AluI AGCT 4 cut(s) 41, 92, 250, 658
Alw21I GWGCWC 2 cut(s) 440, 895
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 5 cut(s) 191, 342, 447, 769, 824
ApeKI GCWGC 9 cut(s) 32, 35, 38, 89, 172, 593, 787, 844, 860
ApoI RAATTY 1 cut(s) 725
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 5 cut(s) 179, 266, 448, 697, 825
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 3 cut(s) 179, 266, 697
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 440, 895
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 9 cut(s) 44, 47, 50, 101, 159, 605, 774, 831, 872
BccI CCATC 2 cut(s) 183, 816
BcgI CGANNNNNNTGC 4 cut(s) 78, 112, 313, 347
BcoDI GTCTC 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 443
BmcAI AGTACT 1 cut(s) 78
Bme18I GGWCC 3 cut(s) 179, 266, 697
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 5 cut(s) 179, 266, 448, 697, 825
BmiI GGNNCC 6 cut(s) 180, 206, 584, 698, 699, 827
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 765, 855
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 196, 228
Bpu10I CCTNAGC 2 cut(s) 218, 654
Bsa29I ATCGAT 1 cut(s) 759
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 286, 559
Bse1I ACTGG 3 cut(s) 164, 503, 599
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 194, 827
BseLI CCNNNNNNNGG 3 cut(s) 200, 286, 559
BseMII CTCAG 2 cut(s) 232, 330
BseNI ACTGG 3 cut(s) 164, 503, 599
BseXI GCAGC 9 cut(s) 44, 47, 50, 101, 159, 605, 774, 831, 872
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 830
Bsh1236I CGCG 2 cut(s) 623, 818
BshFI GGCC 5 cut(s) 193, 344, 449, 771, 826
BshVI ATCGAT 1 cut(s) 759
BsiHKAI GWGCWC 2 cut(s) 440, 895
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 1 cut(s) 580
BslFI GGGAC 3 cut(s) 192, 710, 942
BslI CCNNNNNNNGG 3 cut(s) 200, 286, 559
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 3 cut(s) 192, 710, 942
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 5 cut(s) 193, 344, 449, 771, 826
Bso31I GGTCTC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 700
Bsp1286I GDGCHC 2 cut(s) 440, 895
Bsp143I GATC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 5 cut(s) 425, 502, 560, 623, 818
BspANI GGCC 5 cut(s) 193, 344, 449, 771, 826
BspCNI CTCAG 2 cut(s) 231, 331
BspDI ATCGAT 1 cut(s) 759
BspFNI CGCG 2 cut(s) 623, 818
BspLI GGNNCC 6 cut(s) 180, 206, 584, 698, 699, 827
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 3 cut(s) 164, 503, 599
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 351
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 230, 842
BstDEI CTNAG 4 cut(s) 218, 339, 410, 654
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 194, 827
BstFNI CGCG 2 cut(s) 623, 818
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 2 cut(s) 630, 979
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 2 cut(s) 623, 818
BstV1I GCAGC 9 cut(s) 44, 47, 50, 101, 159, 605, 774, 831, 872
BstV2I GAAGAC 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 759
BsuRI GGCC 5 cut(s) 193, 344, 449, 771, 826
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 2 cut(s) 821, 878
BtsCI GGATG 2 cut(s) 194, 827
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 336, 570
Cac8I GCNNGC 2 cut(s) 230, 842
CfoI GCGC 1 cut(s) 818
Cfr13I GGNCC 5 cut(s) 179, 266, 448, 697, 825
ClaI ATCGAT 1 cut(s) 759
Csp6I GTAC 3 cut(s) 77, 393, 933
CviAII CATG 7 cut(s) 140, 233, 355, 509, 627, 872, 976
CviQI GTAC 3 cut(s) 77, 393, 933
DdeI CTNAG 4 cut(s) 218, 339, 410, 654
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 521
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 3 cut(s) 179, 266, 697
Eco57I CTGAAG 2 cut(s) 259, 473
Eco88I CYCGRG 1 cut(s) 700
EcoO109I RGGNCCY 3 cut(s) 179, 448, 697
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 7 cut(s) 143, 236, 358, 512, 630, 875, 979
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 3 cut(s) 192, 710, 942
FatI CATG 7 cut(s) 139, 232, 354, 508, 626, 871, 975
FauI CCCGC 2 cut(s) 495, 811
FblI GTMKAC 2 cut(s) 482, 962
FokI GGATG 2 cut(s) 201, 834
GlaI GCGC 1 cut(s) 817
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 5 cut(s) 193, 344, 449, 771, 826
HapII CCGG 1 cut(s) 580
HhaI GCGC 1 cut(s) 818
Hin1II CATG 7 cut(s) 143, 236, 358, 512, 630, 875, 979
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 1 cut(s) 541
HpaII CCGG 1 cut(s) 580
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 4 cut(s) 269, 293, 483, 963
Hpy188I TCNGA 2 cut(s) 492, 640
Hpy188III TCNNGA 2 cut(s) 349, 896
Hpy8I GTNNAC 4 cut(s) 269, 293, 483, 963
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 6 cut(s) 58, 218, 355, 359, 563, 801
HpyCH4IV ACGT 2 cut(s) 69, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 218, 339, 410, 654
HpySE526I ACGT 2 cut(s) 69, 931
Hsp92II CATG 7 cut(s) 143, 236, 358, 512, 630, 875, 979
HspAI GCGC 1 cut(s) 816
KflI GGGWCCC 1 cut(s) 697
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 4 cut(s) 204, 588, 873, 898
Lsp1109I GCAGC 9 cut(s) 44, 47, 50, 101, 159, 605, 774, 831, 872
LweI GCATC 2 cut(s) 765, 855
MaeII ACGT 2 cut(s) 69, 931
MaeIII GTNAC 2 cut(s) 143, 334
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 6 cut(s) 248, 265, 426, 466, 725, 929
MhlI GDGCHC 2 cut(s) 440, 895
MluCI AATT 5 cut(s) 24, 258, 284, 725, 936
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 6 cut(s) 63, 222, 227, 334, 687, 792
MseI TTAA 3 cut(s) 246, 261, 444
MslI CAYNNNNRTG 1 cut(s) 312
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 1 cut(s) 580
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 2 cut(s) 623, 818
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 139
NdeII GATC 1 cut(s) 351
NlaIII CATG 7 cut(s) 143, 236, 358, 512, 630, 875, 979
NlaIV GGNNCC 6 cut(s) 180, 206, 584, 698, 699, 827
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 2 cut(s) 630, 979
PceI AGGCCT 1 cut(s) 344
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 541
PpuMI RGGWCCY 2 cut(s) 179, 697
PshBI ATTAAT 1 cut(s) 261
Psp1406I AACGTT 1 cut(s) 69
Psp5II RGGWCCY 2 cut(s) 179, 697
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 6 cut(s) 180, 206, 584, 698, 699, 827
PspPI GGNCC 5 cut(s) 179, 266, 448, 697, 825
PspPPI RGGWCCY 2 cut(s) 179, 697
PstI CTGCAG 1 cut(s) 595
RsaI GTAC 3 cut(s) 78, 394, 934
RsaNI GTAC 3 cut(s) 77, 393, 933
RseI CAYNNNNRTG 1 cut(s) 312
SalI GTCGAC 1 cut(s) 961
SaqAI TTAA 3 cut(s) 246, 261, 444
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 5 cut(s) 179, 266, 448, 697, 825
ScaI AGTACT 1 cut(s) 78
SduI GDGCHC 2 cut(s) 440, 895
SfaNI GCATC 2 cut(s) 765, 855
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 3 cut(s) 179, 266, 697
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 24, 258, 284, 725, 936
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 5 cut(s) 425, 502, 560, 623, 818
SspI AATATT 1 cut(s) 420
StuI AGGCCT 1 cut(s) 344
StyI CCWWGG 1 cut(s) 139
TaiI ACGT 2 cut(s) 72, 934
TaqI TCGA 3 cut(s) 752, 759, 962
TaqII GACCGA 1 cut(s) 545
TasI AATT 5 cut(s) 24, 258, 284, 725, 936
TatI WGTACW 1 cut(s) 76
TauI GCSGC 2 cut(s) 563, 626
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 3 cut(s) 246, 261, 444
Tru9I TTAA 3 cut(s) 246, 261, 444
TscAI CASTG 2 cut(s) 343, 570
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 9 cut(s) 32, 35, 38, 89, 172, 593, 787, 844, 860
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 112, 249, 497, 733
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 2 cut(s) 343, 570
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 3 cut(s) 179, 266, 697
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 1 cut(s) 725
XceI RCATGY 2 cut(s) 630, 979
XmiI GTMKAC 2 cut(s) 482, 962
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.