pycom290g00150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_290
OG0018124
Physical Location & Seq
Reverse (-)
125067 .. 126000
934 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom290g00150.2

Sequence Viewer

Length: 681 bp
ATGGCTACAAGCATGGATAGGAATTGGCATTGCCTTTCTCTGTACCTACTTGTCCTGGTAATGACTAGTGCATATGCATCAAATGATGACCAAGAATTGAAGAGTAAGCGACTTTGCAGCCAGTGCTCGAAATGTGAGTCAAGTAAATGCCCTCCAAGCGAAGCCTACCCCCATATGACTGCATTTGATGACACTCTTATTGCTGGTGCTTTACAGTCTGACTTTGTGGATTTGAATGACAGAGGAGTTTACTCAGTGCCAGATATCAAGGGTGGCCAATCGCCAAATCTAAATGCTTATTATGGCTGGAAATCTACTTCTGGTTCTGCTTCCGGTTTTCACAGGTTTAGCAACTATATGGACAAATGTTCAGGTGGACAAACTTACCTCACGGTGGACAAGCACGGCAGTGTTAGCCTTCGTTTATTGAGCTCCCTGGAAAGCTTAGCAGAGGCTGACTGGAAATCAATTAATCCACCCAAGAAACTAAACCATCGCCAATTACGCTTCTGGGTCTCTCGGAGTGCAAGAAAATGCCTCACTGTATTTGGAGGAAAAACAAAGAAACGAAGAGTGGGTGTGTCCGAATGCAAGTTTAATGGCGCAAACCCGTACCAACTGTTTGCCTTCCGCTTTCATTACCACAAAGCCTTCTGTTGTTGCGGTGTTCACAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.34

Weight (kDa)

9.09

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018124)

Species Orthologous Gene IDs
prunus_persica Prupe.7G270400_v2.0.a1
pyrus_communis pycom290g00150
rosa_laevigata RLG00000015618
rosa_multiflora Rmu_sc0009404.1_g000005
rosa_roxburghii Rroxscaffold_2G00156090
rosa_rugosa Rorug01G0453900
rosa_samantha Rh2AG002000 Rh2BG001700 Rh2CG001900 Rh2DG002100
rosa_wichuraiana Rw2G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 631, 663
AcoI YGGCCR 1 cut(s) 274
AfaI GTAC 2 cut(s) 44, 614
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 2 cut(s) 100, 235
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 2 cut(s) 54, 435
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 2 cut(s) 432, 444
AluI AGCT 2 cut(s) 432, 444
Alw21I GWGCWC 2 cut(s) 128, 434
Alw26I GTCTC 1 cut(s) 520
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 1 cut(s) 471
AspLEI GCGC 1 cut(s) 605
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 128, 434
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 501
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 2 cut(s) 56, 437
BcoDI GTCTC 1 cut(s) 520
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 118
BlpI GCTNAGC 1 cut(s) 445
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 56, 437
BmrFI CCNGG 2 cut(s) 56, 437
BmsI GCATC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 121, 464
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 2 cut(s) 56, 437
BseDI CCNNGG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 121, 464
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 128, 434
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 128, 434
Bsp1720I GCTNAGC 1 cut(s) 445
BspACI CCGC 2 cut(s) 631, 663
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 2 cut(s) 121, 464
BssECI CCNNGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 56, 437
Bst4CI ACNGT 4 cut(s) 216, 394, 544, 621
Bst6I CTCTTC 2 cut(s) 95, 565
BstAPI GCANNNNNTGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 253, 445
BstHHI GCGC 1 cut(s) 605
BstMAI GTCTC 1 cut(s) 520
BstMWI GCNNNNNNNGC 4 cut(s) 123, 156, 414, 504
BstNI CCWGG 2 cut(s) 56, 437
BstSCI CCNGG 2 cut(s) 54, 435
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 479
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 4 cut(s) 128, 261, 415, 540
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 605
Csp6I GTAC 2 cut(s) 43, 613
CviAII CATG 1 cut(s) 13
CviQI GTAC 2 cut(s) 43, 613
DdeI CTNAG 2 cut(s) 253, 445
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 95, 565
EarI CTCTTC 2 cut(s) 95, 565
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 54, 435
EcoRV GATATC 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 434
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 73, 75, 174, 176, 303, 357, 359
FatI CATG 1 cut(s) 12
FauNDI CATATG 2 cut(s) 73, 174
Fnu4HI GCNGC 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 604
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 605
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 333
Hpy166II GTNNAC 4 cut(s) 250, 377, 397, 670
Hpy188I TCNGA 3 cut(s) 220, 522, 586
Hpy8I GTNNAC 4 cut(s) 250, 377, 397, 670
HpyAV CCTTC 3 cut(s) 428, 637, 661
HpyCH4III ACNGT 4 cut(s) 216, 394, 544, 621
HpyCH4V TGCA 6 cut(s) 71, 77, 117, 182, 527, 591
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 156, 414, 504
HpyF3I CTNAG 2 cut(s) 253, 445
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 86
MaeI CTAG 1 cut(s) 66
MboII GAAGA 2 cut(s) 112, 582
MhlI GDGCHC 2 cut(s) 128, 434
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 4 cut(s) 22, 95, 468, 500
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 6 cut(s) 162, 236, 398, 445, 545, 548
Mox20I TGGCCA 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 79
MscI TGGCCA 1 cut(s) 276
MseI TTAA 2 cut(s) 471, 597
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 56, 437
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 2 cut(s) 56, 437
MwoI GCNNNNNNNGC 4 cut(s) 123, 156, 414, 504
NdeI CATATG 2 cut(s) 73, 174
NlaIII CATG 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 408
PctI GAATGC 1 cut(s) 593
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 54, 435
PspGI CCWGG 2 cut(s) 54, 435
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 44, 614
RsaNI GTAC 2 cut(s) 43, 613
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 471, 597
SatI GCNGC 1 cut(s) 118
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 56, 437
SduI GDGCHC 2 cut(s) 128, 434
SetI ASST 6 cut(s) 48, 347, 376, 390, 434, 446
SfaNI GCATC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 408
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 4 cut(s) 22, 95, 468, 500
SsiI CCGC 2 cut(s) 631, 663
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 54, 435
TaaI ACNGT 4 cut(s) 216, 394, 544, 621
TaqI TCGA 1 cut(s) 128
TasI AATT 4 cut(s) 22, 95, 468, 500
Tru1I TTAA 2 cut(s) 471, 597
Tru9I TTAA 2 cut(s) 471, 597
TscAI CASTG 4 cut(s) 128, 261, 415, 547
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 4 cut(s) 128, 261, 415, 547
VspI ATTAAT 1 cut(s) 471
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.