Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007316

Physical Location & Seq

Genomic Coordinates Reverse (-)

54862572 .. 54867234

Gene Structure 4663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCAAAACCATTGGAGAGATACCAAAAACTTGCGCTGAAAGAATCTTTAGGATCAATTCACAGATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAATAATCTCCAGTCTCTTATCTTCCAAGATACCGTCTCCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTCAGCAGCTCATCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGCTGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGGAATAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATGCAGAAAATTGACCCTGTATCACCTAGTCAGGTCGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGTGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGGGGAAATTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

34.15

Weight (kDa)

9.36

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	6 - 104	3.5e-41	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	115 - 158	1.6e-15	F-box-like
F-box	PF00646	116 - 155	2.4e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31840 AT2G31840
fragaria_vesca	FvH4_1g00130 FvH4_1g00130 FvH4_1g00130 FvH4_1g00130
malus_domestica	MD15G1142700.v1.1
prunus_persica	Prupe.7G270500_v2.0.a1 Prupe.7G270500_v2.0.a1
pyrus_communis	pycom15g12870
rosa_chinensis	RchiOBHm_Chr2g0084441
rosa_laevigata	RLG00000015617
rosa_multiflora	Rmu_sc0009404.1_g000006 Rmu_sc0025868.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156080
rosa_rugosa	Rorug01G0453600 Rorug01G0453700 Rorug01G0453700 Rorug01G0453800 Rorug01G0453900
rosa_samantha	Rh2AG001900 Rh2BG001600 Rh2CG001800 Rh2DG002000
rosa_wichuraiana	Rw2G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	2 cut(s)	196, 315
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	774, 891
AfaI	GTAC	2 cut(s)	369, 868
AfiI	CCNNNNNNNGG	1 cut(s)	834
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	6 cut(s)	395, 508, 542, 580, 685, 884
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	5 cut(s)	88, 93, 215, 323, 545
AluI	AGCT	5 cut(s)	88, 93, 215, 323, 545
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	5 cut(s)	144, 166, 179, 211, 409
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	3 cut(s)	240, 425, 843
ApeKI	GCWGC	2 cut(s)	212, 440
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	5 cut(s)	37, 110, 198, 315, 317
AspS9I	GGNCC	2 cut(s)	825, 843
AsuHPI	GGTGA	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	825
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	197, 859
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	224, 452
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	626
BcoDI	GTCTC	5 cut(s)	144, 166, 179, 211, 409
BfaI	CTAG	2 cut(s)	738, 834
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	213, 441
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	214, 442
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	825
BmgT120I	GGNCC	2 cut(s)	825, 843
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	197, 859
BpmI	CTGGAG	2 cut(s)	119, 212
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	4 cut(s)	136, 528, 624, 864
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	103, 115, 222
BseNI	ACTGG	4 cut(s)	136, 528, 624, 864
BsePI	GCGCGC	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	212, 215
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	224, 452
Bsh1236I	CGCG	2 cut(s)	196, 315
BshFI	GGCC	3 cut(s)	242, 427, 845
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmAI	GTCTC	5 cut(s)	144, 166, 179, 211, 409
BsmBI	CGTCTC	2 cut(s)	166, 179
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	242, 427, 845
Bsp1286I	GDGCHC	2 cut(s)	90, 126
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	53
Bsp1720I	GCTNAGC	1 cut(s)	89
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	242, 427, 845
BspCNI	CTCAG	3 cut(s)	102, 114, 221
BspFNI	CGCG	2 cut(s)	196, 315
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	136, 528, 624, 864
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	428
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	3 cut(s)	160, 638, 809
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	315, 325, 425
BstDEI	CTNAG	3 cut(s)	89, 101, 208
BstDSI	CCRYGG	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	832
BstFNI	CGCG	2 cut(s)	196, 315
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	5 cut(s)	37, 110, 198, 315, 317
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	5 cut(s)	144, 166, 179, 211, 409
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 299
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	2 cut(s)	196, 315
BstV1I	GCAGC	2 cut(s)	224, 452
BstV2I	GAAGAC	2 cut(s)	197, 859
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	3 cut(s)	242, 427, 845
BtgI	CCRYGG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 814
Cac8I	GCNNGC	3 cut(s)	315, 325, 425
CfoI	GCGC	5 cut(s)	37, 110, 198, 315, 317
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	825, 843
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	368, 867
CviAII	CATG	3 cut(s)	371, 429, 673
CviQI	GTAC	2 cut(s)	368, 867
DdeI	CTNAG	3 cut(s)	89, 101, 208
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	825
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	774, 891
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	832
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	2 cut(s)	166, 179
FaeI	CATG	3 cut(s)	374, 432, 676
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 348, 380
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	370, 428, 672
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	2 cut(s)	213, 441
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	213, 441
FspBI	CTAG	2 cut(s)	738, 834
GlaI	GCGC	5 cut(s)	36, 109, 197, 314, 316
GluI	GCNGC	2 cut(s)	213, 441
GsuI	CTGGAG	2 cut(s)	119, 212
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	242, 427, 845
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	5 cut(s)	37, 110, 198, 315, 317
Hin1II	CATG	3 cut(s)	374, 432, 676
Hin6I	GCGC	5 cut(s)	35, 108, 196, 313, 315
HinP1I	GCGC	5 cut(s)	35, 108, 196, 313, 315
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	4 cut(s)	44, 491, 767, 812
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	1 cut(s)	726
Hpy166II	GTNNAC	2 cut(s)	533, 751
Hpy188I	TCNGA	3 cut(s)	104, 793, 817
Hpy188III	TCNNGA	3 cut(s)	182, 229, 707
Hpy8I	GTNNAC	2 cut(s)	533, 751
HpyAV	CCTTC	3 cut(s)	188, 586, 866
HpyCH4III	ACNGT	3 cut(s)	160, 638, 809
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	5 cut(s)	81, 293, 440, 648, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 299
HpyF3I	CTNAG	3 cut(s)	89, 101, 208
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	374, 432, 676
HspAI	GCGC	5 cut(s)	35, 108, 196, 313, 315
Kzo9I	GATC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	224, 452
MaeI	CTAG	2 cut(s)	738, 834
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	8 cut(s)	139, 202, 274, 344, 776, 777, 780, 864
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	90, 126
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	8 cut(s)	57, 96, 433, 601, 614, 654, 720, 879
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	6 cut(s)	98, 232, 233, 236, 303, 459
Mox20I	TGGCCA	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	2 cut(s)	95, 617
Msp20I	TGGCCA	1 cut(s)	427
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	196, 315
MwoI	GCNNNNNNNGC	2 cut(s)	209, 299
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	374, 432, 676
NlaIV	GGNNCC	1 cut(s)	826
NspI	RCATGY	1 cut(s)	374
PauI	GCGCGC	1 cut(s)	313
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	44, 767, 812
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	214, 442
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	825
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	2 cut(s)	825, 843
PspPPI	RGGWCCY	1 cut(s)	825
PteI	GCGCGC	1 cut(s)	313
RsaI	GTAC	2 cut(s)	369, 868
RsaNI	GTAC	2 cut(s)	368, 867
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	95, 617
SatI	GCNGC	2 cut(s)	213, 441
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	825, 843
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	90, 126
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	825
Sse9I	AATT	8 cut(s)	57, 96, 433, 601, 614, 654, 720, 879
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	738, 834
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	160, 638, 809
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	666, 850
TasI	AATT	8 cut(s)	57, 96, 433, 601, 614, 654, 720, 879
TatI	WGTACW	2 cut(s)	367, 866
TfiI	GAWTC	3 cut(s)	44, 767, 812
Tru1I	TTAA	2 cut(s)	95, 617
Tru9I	TTAA	2 cut(s)	95, 617
TscAI	CASTG	2 cut(s)	205, 814
TseI	GCWGC	2 cut(s)	212, 440
TspDTI	ATGAA	3 cut(s)	203, 594, 689
TspRI	CASTG	2 cut(s)	205, 814
VpaK11BI	GGWCC	1 cut(s)	825
XagI	CCTNNNNNAGG	1 cut(s)	832
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	2 cut(s)	738, 834
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.